Wall clock time and date at job start Fri Apr 10 2020 20:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35905 * 116.99937 * 2 1 4 4 C 1.38732 * 119.93964 * 0.02562 * 3 2 1 5 5 C 1.37909 * 120.16543 * 179.97438 * 4 3 2 6 6 C 1.39725 * 120.04881 * 0.25549 * 5 4 3 7 7 C 1.47870 * 120.05949 * 179.74314 * 6 5 4 8 8 C 1.40000 * 119.88878 * 179.71889 * 7 6 5 9 9 C 1.36215 * 120.11781 * 179.75898 * 8 7 6 10 10 C 1.40951 * 119.88042 * 0.52051 * 9 8 7 11 11 C 1.40986 * 120.11237 * 179.71571 * 10 9 8 12 12 H 1.08000 * 120.00268 * 204.71932 * 11 10 9 13 13 C 1.39964 * 119.99680 * 24.72049 * 11 10 9 14 14 N 1.30822 * 120.00350 * 17.96179 * 13 11 10 15 15 Si 1.86802 * 119.99812 * 197.95856 * 13 11 10 16 16 H 1.48504 * 109.47062 * 59.99920 * 15 13 11 17 17 H 1.48496 * 109.47635 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47192 * 300.00323 * 15 13 11 19 19 C 1.40957 * 119.77404 * 359.73967 * 10 9 8 20 20 C 1.36206 * 119.88507 * 359.97438 * 19 10 9 21 21 C 1.39635 * 119.87790 * 359.48973 * 6 5 4 22 22 C 1.38417 * 119.83703 * 0.50799 * 21 6 5 23 23 S 1.76200 * 120.02723 * 179.77007 * 22 21 6 24 24 C 1.81401 * 102.99805 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.46974 * 59.99546 * 1 2 3 26 26 H 1.09003 * 109.47356 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47157 * 300.00230 * 1 2 3 28 28 H 1.07998 * 119.91486 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.97679 * 179.97438 * 5 4 3 30 30 H 1.08005 * 119.93871 * 0.02562 * 8 7 6 31 31 H 1.07992 * 120.05612 * 180.23623 * 9 8 7 32 32 H 0.97002 * 119.99918 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.05556 * 179.97438 * 19 10 9 34 34 H 1.07996 * 119.94371 * 180.02562 * 20 19 10 35 35 H 1.07998 * 120.07777 * 180.25384 * 21 6 5 36 36 H 1.09002 * 109.46734 * 180.02562 * 24 23 22 37 37 H 1.08993 * 109.47527 * 300.00382 * 24 23 22 38 38 H 1.09002 * 109.46811 * 60.00402 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2891 2.3736 0.0005 5 6 1.9104 3.6049 0.0011 6 6 3.3053 3.6847 -0.0043 7 6 3.9716 5.0048 -0.0095 8 6 5.3696 5.0806 -0.0089 9 6 5.9883 6.2941 -0.0186 10 6 5.2184 7.4748 -0.0181 11 6 5.8537 8.7334 -0.0221 12 1 5.3398 9.5990 0.3692 13 6 7.1504 8.8612 -0.5332 14 7 7.6407 7.9321 -1.3128 15 14 8.1809 10.3584 -0.1022 16 1 8.3673 10.4240 1.3697 17 1 9.5061 10.2547 -0.7642 18 1 7.4888 11.5867 -0.5686 19 6 3.8112 7.3929 -0.0132 20 6 3.2024 6.1745 -0.0094 21 6 4.0690 2.5157 0.0005 22 6 3.4404 1.2825 0.0000 23 16 4.3992 -0.1958 0.0000 24 6 6.1041 0.4236 0.0000 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2108 2.3144 0.0005 29 1 1.3182 4.5080 0.0011 30 1 5.9585 4.1753 -0.0051 31 1 7.0667 6.3514 -0.0220 32 1 8.5395 8.0205 -1.6667 33 1 3.2169 8.2947 -0.0123 34 1 2.1243 6.1107 -0.0060 35 1 5.1474 2.5737 0.0005 36 1 6.7965 -0.4183 -0.0005 37 1 6.2702 1.0306 -0.8899 38 1 6.2701 1.0306 0.8900 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243748310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:46:48 Heat of formation + Delta-G solvation = 0.468976 kcal Electronic energy + Delta-G solvation = -20721.091505 eV Core-core repulsion = 17619.386906 eV Total energy + Delta-G solvation = -3101.704599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 300.093 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.78158 -38.09977 -36.63622 -33.92205 -31.32269 -31.14250 -29.54003 -29.04201 -28.36574 -27.10934 -24.95477 -22.92834 -22.05701 -20.52962 -20.05566 -18.19822 -17.51015 -16.67644 -15.88849 -15.60922 -15.46741 -15.09032 -14.41244 -14.04816 -13.80423 -13.63032 -13.53335 -13.25332 -12.83456 -12.66003 -12.46970 -12.32412 -12.16049 -11.79805 -11.60758 -11.38553 -11.19361 -10.97970 -10.81934 -10.72046 -10.51138 -10.01443 -9.80087 -9.51990 -9.42890 -9.27869 -8.41506 -7.69321 -7.29761 -7.00765 -6.79214 -4.48202 1.50768 1.57750 1.76172 2.65711 2.72025 2.95380 2.97589 3.01963 3.11650 3.45433 3.76637 4.08912 4.59672 4.99179 5.09778 5.16214 5.16454 5.19973 5.36585 5.44396 5.59255 5.61329 5.62324 5.80501 5.87390 6.00436 6.14229 6.29972 6.47960 6.59516 6.78325 6.80783 6.90724 7.04508 7.14222 7.26533 7.45914 7.56570 7.79174 7.87782 8.00692 8.09806 8.43631 8.66818 8.78957 9.93898 Molecular weight = 300.09amu Principal moments of inertia in cm(-1) A = 0.024082 B = 0.003385 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.417200 B = 8269.654307 C = 9338.672347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.101 3.899 4 C -0.178 4.178 5 C -0.111 4.111 6 C 0.011 3.989 7 C -0.203 4.203 8 C -0.076 4.076 9 C -0.171 4.171 10 C 0.119 3.881 11 C -0.447 4.447 12 H 0.082 0.918 13 C 0.074 3.926 14 N -0.778 5.778 15 Si 0.912 3.088 16 H -0.261 1.261 17 H -0.276 1.276 18 H -0.263 1.263 19 C -0.230 4.230 20 C -0.063 4.063 21 C -0.122 4.122 22 C -0.102 4.102 23 S -0.113 6.113 24 C -0.149 4.149 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.285 0.715 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.867 -10.356 1.714 12.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.227 6.227 3 C 0.052 3.948 4 C -0.198 4.198 5 C -0.131 4.131 6 C 0.009 3.991 7 C -0.205 4.205 8 C -0.095 4.095 9 C -0.190 4.190 10 C 0.116 3.884 11 C -0.474 4.474 12 H 0.100 0.900 13 C -0.146 4.146 14 N -0.401 5.401 15 Si 0.736 3.264 16 H -0.186 1.186 17 H -0.201 1.201 18 H -0.188 1.188 19 C -0.249 4.249 20 C -0.081 4.081 21 C -0.145 4.145 22 C -0.215 4.215 23 S 0.127 5.873 24 C -0.318 4.318 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.106 0.894 31 H 0.136 0.864 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.147 0.853 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.798 -11.813 1.554 13.250 hybrid contribution 0.635 2.206 0.026 2.295 sum -5.163 -9.607 1.579 11.020 Atomic orbital electron populations 1.22962 0.79145 1.03313 1.01074 1.86052 1.20574 1.26761 1.89358 1.18236 0.89983 0.84359 1.02232 1.20954 0.99168 0.91952 1.07713 1.21053 0.94183 0.96627 1.01255 1.18825 0.92174 0.92710 0.95439 1.17988 0.92856 0.89975 1.19640 1.20478 0.92942 0.96709 0.99337 1.20978 0.99865 0.91271 1.06903 1.17724 0.90970 0.93292 0.86401 1.19682 0.98313 0.95532 1.33920 0.89981 1.26030 0.98043 0.98045 0.92525 1.69817 1.16723 1.32993 1.20574 0.86291 0.78668 0.81299 0.80154 1.18567 1.20105 1.18752 1.20679 0.94691 0.95695 1.13860 1.20378 0.97058 0.92433 0.98242 1.21069 0.99729 0.89984 1.03737 1.20727 0.93109 0.96791 1.10863 1.85298 0.99646 1.08945 1.93365 1.23686 0.96424 1.05775 1.05913 0.92980 0.88714 0.92981 0.85751 0.85699 0.89350 0.86370 0.90346 0.88701 0.88928 0.85278 0.87814 0.89749 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.68 9.85 -19.44 -0.19 -4.87 16 3 C 0.10 1.68 6.70 -38.88 -0.26 1.41 16 4 C -0.18 -2.74 9.02 -39.52 -0.36 -3.10 16 5 C -0.11 -1.91 9.42 -39.15 -0.37 -2.28 16 6 C 0.01 0.21 5.88 -104.88 -0.62 -0.41 16 7 C -0.20 -4.46 5.90 -104.63 -0.62 -5.07 16 8 C -0.08 -1.74 9.36 -39.65 -0.37 -2.11 16 9 C -0.17 -4.26 8.63 -39.28 -0.34 -4.60 16 10 C 0.12 3.03 5.57 -106.80 -0.60 2.44 16 11 C -0.45 -11.21 9.03 -37.89 -0.34 -11.55 16 12 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 13 C 0.07 1.75 5.13 -17.34 -0.09 1.66 16 14 N -0.78 -19.00 10.96 55.55 0.61 -18.39 16 15 Si 0.91 17.54 29.60 -169.99 -5.03 12.51 16 16 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 17 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 18 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 19 C -0.23 -5.41 9.73 -39.28 -0.38 -5.79 16 20 C -0.06 -1.37 9.36 -39.65 -0.37 -1.74 16 21 C -0.12 -2.22 8.73 -38.99 -0.34 -2.56 16 22 C -0.10 -1.77 6.11 -39.00 -0.24 -2.01 16 23 S -0.11 -1.69 22.04 -107.50 -2.37 -4.06 16 24 C -0.15 -1.80 9.15 101.05 0.92 -0.87 16 25 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 28 H 0.12 1.53 6.27 -52.49 -0.33 1.20 16 29 H 0.13 1.97 6.17 -52.49 -0.32 1.64 16 30 H 0.09 1.81 6.17 -52.48 -0.32 1.48 16 31 H 0.12 3.01 6.16 -52.49 -0.32 2.68 16 32 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 33 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 34 H 0.09 1.75 6.17 -52.49 -0.32 1.42 16 35 H 0.13 2.23 3.98 -52.49 -0.21 2.02 16 36 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 37 H 0.08 1.02 7.75 -51.93 -0.40 0.62 16 38 H 0.08 1.00 7.74 -51.92 -0.40 0.60 16 LS Contribution 327.54 15.07 4.94 4.94 Total: -1.00 -27.56 327.54 -9.67 -37.23 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -4.25 Total: 7.93 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: -3.37 Total: -35.28 kcal Atomic # 7 Polarization: -19.00 SS G_CDS: 0.61 Total: -18.39 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.19 Total: -4.87 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.37 Total: -4.06 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.56 -9.67 -37.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243748310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.701 kcal (2) G-P(sol) polarization free energy of solvation -27.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds