Wall clock time and date at job start Fri Apr 10 2020 20:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35905 * 116.99937 * 2 1 4 4 C 1.38732 * 119.93964 * 0.02562 * 3 2 1 5 5 C 1.37909 * 120.16543 * 179.97438 * 4 3 2 6 6 C 1.39725 * 120.04881 * 0.25549 * 5 4 3 7 7 C 1.47870 * 120.05949 * 179.74314 * 6 5 4 8 8 C 1.40000 * 119.88878 * 179.71889 * 7 6 5 9 9 C 1.36215 * 120.11781 * 179.75898 * 8 7 6 10 10 C 1.40951 * 119.88042 * 0.52051 * 9 8 7 11 11 C 1.40986 * 120.11237 * 179.71571 * 10 9 8 12 12 H 1.08000 * 120.00268 * 204.71932 * 11 10 9 13 13 C 1.39964 * 119.99680 * 24.72049 * 11 10 9 14 14 N 1.30822 * 120.00350 * 17.96179 * 13 11 10 15 15 Si 1.86802 * 119.99812 * 197.95856 * 13 11 10 16 16 H 1.48504 * 109.47062 * 59.99920 * 15 13 11 17 17 H 1.48496 * 109.47635 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47192 * 300.00323 * 15 13 11 19 19 C 1.40957 * 119.77404 * 359.73967 * 10 9 8 20 20 C 1.36206 * 119.88507 * 359.97438 * 19 10 9 21 21 C 1.39635 * 119.87790 * 359.48973 * 6 5 4 22 22 C 1.38417 * 119.83703 * 0.50799 * 21 6 5 23 23 S 1.76200 * 120.02723 * 179.77007 * 22 21 6 24 24 C 1.81401 * 102.99805 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.46974 * 59.99546 * 1 2 3 26 26 H 1.09003 * 109.47356 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47157 * 300.00230 * 1 2 3 28 28 H 1.07998 * 119.91486 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.97679 * 179.97438 * 5 4 3 30 30 H 1.08005 * 119.93871 * 0.02562 * 8 7 6 31 31 H 1.07992 * 120.05612 * 180.23623 * 9 8 7 32 32 H 0.97002 * 119.99918 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.05556 * 179.97438 * 19 10 9 34 34 H 1.07996 * 119.94371 * 180.02562 * 20 19 10 35 35 H 1.07998 * 120.07777 * 180.25384 * 21 6 5 36 36 H 1.09002 * 109.46734 * 180.02562 * 24 23 22 37 37 H 1.08993 * 109.47527 * 300.00382 * 24 23 22 38 38 H 1.09002 * 109.46811 * 60.00402 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2891 2.3736 0.0005 5 6 1.9104 3.6049 0.0011 6 6 3.3053 3.6847 -0.0043 7 6 3.9716 5.0048 -0.0095 8 6 5.3696 5.0806 -0.0089 9 6 5.9883 6.2941 -0.0186 10 6 5.2184 7.4748 -0.0181 11 6 5.8537 8.7334 -0.0221 12 1 5.3398 9.5990 0.3692 13 6 7.1504 8.8612 -0.5332 14 7 7.6407 7.9321 -1.3128 15 14 8.1809 10.3584 -0.1022 16 1 8.3673 10.4240 1.3697 17 1 9.5061 10.2547 -0.7642 18 1 7.4888 11.5867 -0.5686 19 6 3.8112 7.3929 -0.0132 20 6 3.2024 6.1745 -0.0094 21 6 4.0690 2.5157 0.0005 22 6 3.4404 1.2825 0.0000 23 16 4.3992 -0.1958 0.0000 24 6 6.1041 0.4236 0.0000 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2108 2.3144 0.0005 29 1 1.3182 4.5080 0.0011 30 1 5.9585 4.1753 -0.0051 31 1 7.0667 6.3514 -0.0220 32 1 8.5395 8.0205 -1.6667 33 1 3.2169 8.2947 -0.0123 34 1 2.1243 6.1107 -0.0060 35 1 5.1474 2.5737 0.0005 36 1 6.7965 -0.4183 -0.0005 37 1 6.2702 1.0306 -0.8899 38 1 6.2701 1.0306 0.8900 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243748310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:46:47 Heat of formation + Delta-G solvation = -11.659214 kcal Electronic energy + Delta-G solvation = -20721.617422 eV Core-core repulsion = 17619.386906 eV Total energy + Delta-G solvation = -3102.230517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 300.093 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.03865 -39.66676 -38.05968 -35.63692 -32.76965 -32.61543 -31.24697 -30.28409 -29.65674 -28.15655 -26.57036 -24.35595 -23.54464 -22.19374 -21.61539 -19.51471 -19.17717 -17.96397 -17.38064 -16.91838 -16.63075 -16.54798 -15.83570 -15.31434 -15.18378 -14.95939 -14.80492 -14.66397 -14.32035 -13.97988 -13.96328 -13.78209 -13.34304 -13.30046 -12.93179 -12.81828 -12.69174 -12.55476 -12.22716 -12.01271 -11.88462 -11.57412 -11.28368 -11.10265 -11.01190 -10.71393 -9.90378 -9.49592 -8.84627 -8.68553 -8.15319 -6.32470 0.06805 0.25295 0.62522 1.11634 1.19285 1.37732 1.49177 1.51543 1.56852 2.17115 2.40219 2.55244 2.96241 3.76979 3.82267 3.98171 4.13660 4.22415 4.24647 4.28795 4.35910 4.44198 4.46701 4.53691 4.58482 4.76277 4.82153 4.86056 4.95395 5.07815 5.12463 5.21415 5.31451 5.36679 5.58503 5.68145 5.72011 6.01802 6.05833 6.25013 6.30101 6.44616 6.62021 6.85076 6.97615 8.23329 Molecular weight = 300.09amu Principal moments of inertia in cm(-1) A = 0.024082 B = 0.003385 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.417200 B = 8269.654307 C = 9338.672347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.327 6.327 3 C 0.109 3.891 4 C -0.174 4.174 5 C -0.106 4.106 6 C -0.025 4.025 7 C -0.194 4.194 8 C -0.086 4.086 9 C -0.192 4.192 10 C 0.086 3.914 11 C -0.487 4.487 12 H 0.081 0.919 13 C 0.035 3.965 14 N -0.814 5.814 15 Si 0.984 3.016 16 H -0.260 1.260 17 H -0.267 1.267 18 H -0.257 1.257 19 C -0.244 4.244 20 C -0.069 4.069 21 C -0.123 4.123 22 C -0.124 4.124 23 S -0.121 6.121 24 C -0.144 4.144 25 H 0.064 0.936 26 H 0.119 0.881 27 H 0.065 0.935 28 H 0.161 0.839 29 H 0.140 0.860 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.292 0.708 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.081 0.919 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.416 -11.840 1.937 14.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C 0.058 3.942 4 C -0.194 4.194 5 C -0.127 4.127 6 C -0.027 4.027 7 C -0.196 4.196 8 C -0.105 4.105 9 C -0.212 4.212 10 C 0.084 3.916 11 C -0.516 4.516 12 H 0.100 0.900 13 C -0.182 4.182 14 N -0.438 5.438 15 Si 0.804 3.196 16 H -0.184 1.184 17 H -0.191 1.191 18 H -0.182 1.182 19 C -0.263 4.263 20 C -0.087 4.087 21 C -0.146 4.146 22 C -0.236 4.236 23 S 0.119 5.881 24 C -0.313 4.313 25 H 0.083 0.917 26 H 0.138 0.862 27 H 0.083 0.917 28 H 0.179 0.821 29 H 0.158 0.842 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.100 0.900 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.373 -13.319 1.776 15.327 hybrid contribution 0.883 2.276 -0.040 2.442 sum -6.490 -11.043 1.735 12.926 Atomic orbital electron populations 1.23351 0.76473 1.05527 1.02267 1.86057 1.23318 1.25934 1.88783 1.18504 0.90074 0.85432 1.00163 1.21283 1.00966 0.90741 1.06411 1.21269 0.93292 0.98102 0.99993 1.18816 0.93464 0.91712 0.98681 1.18327 0.92595 0.91550 1.17082 1.20705 0.93953 0.96608 0.99201 1.20948 0.99285 0.92221 1.08709 1.18064 0.92129 0.93817 0.87613 1.19902 0.99941 0.95610 1.36104 0.90045 1.26847 0.98580 1.00999 0.91728 1.69867 1.17368 1.34977 1.21602 0.85215 0.77113 0.77502 0.79734 1.18410 1.19080 1.18152 1.20897 0.94265 0.96948 1.14229 1.20696 0.98745 0.91680 0.97566 1.21112 0.99891 0.90249 1.03382 1.20977 0.94249 0.97228 1.11164 1.85249 1.01375 1.08265 1.93166 1.23773 0.94898 1.06808 1.05798 0.91744 0.86246 0.91665 0.82150 0.84219 0.87754 0.87919 0.89750 0.87878 0.85774 0.85259 0.85074 0.89975 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -8.75 9.85 -92.48 -0.91 -9.66 16 3 C 0.11 3.30 6.70 22.72 0.15 3.45 16 4 C -0.17 -4.78 9.02 22.31 0.20 -4.58 16 5 C -0.11 -3.40 9.42 22.55 0.21 -3.18 16 6 C -0.02 -0.94 5.88 -20.03 -0.12 -1.05 16 7 C -0.19 -8.52 5.90 -19.87 -0.12 -8.63 16 8 C -0.09 -4.05 9.36 22.23 0.21 -3.84 16 9 C -0.19 -10.05 8.63 22.46 0.19 -9.85 16 10 C 0.09 4.60 5.57 -21.28 -0.12 4.48 16 11 C -0.49 -25.61 9.03 23.36 0.21 -25.40 16 12 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 13 C 0.04 1.72 5.13 85.26 0.44 2.16 16 14 N -0.81 -41.43 10.96 21.83 0.24 -41.19 16 15 Si 0.98 36.77 29.60 68.60 2.03 38.80 16 16 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 17 H -0.27 -9.40 7.11 99.48 0.71 -8.70 16 18 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 19 C -0.24 -11.77 9.73 22.46 0.22 -11.55 16 20 C -0.07 -2.99 9.36 22.23 0.21 -2.78 16 21 C -0.12 -4.37 8.73 22.65 0.20 -4.17 16 22 C -0.12 -4.08 6.11 22.65 0.14 -3.94 16 23 S -0.12 -3.44 22.04 -56.49 -1.25 -4.68 16 24 C -0.14 -3.26 9.15 113.37 1.04 -2.22 16 25 H 0.06 0.91 7.65 -2.39 -0.02 0.89 16 26 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 0.91 7.65 -2.39 -0.02 0.89 16 28 H 0.16 3.17 6.27 -2.91 -0.02 3.15 16 29 H 0.14 3.95 6.17 -2.91 -0.02 3.94 16 30 H 0.10 4.38 6.17 -2.91 -0.02 4.36 16 31 H 0.10 5.56 6.16 -2.91 -0.02 5.55 16 32 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 33 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 34 H 0.12 4.46 6.17 -2.91 -0.02 4.44 16 35 H 0.13 4.44 3.98 -2.91 -0.01 4.43 16 36 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.08 1.91 7.75 -2.39 -0.02 1.89 16 38 H 0.08 1.91 7.74 -2.39 -0.02 1.89 16 Total: -1.00 -61.70 327.54 5.38 -56.32 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 1.09 Total: 30.12 kcal Atomic # 6 Polarization: -73.88 SS G_CDS: 4.17 Total: -69.71 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.24 Total: -41.19 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.91 Total: -9.66 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.25 Total: -4.68 kcal Total: -61.70 5.38 -56.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243748310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.662 kcal (2) G-P(sol) polarization free energy of solvation -61.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds