Wall clock time and date at job start Fri Apr 10 2020 20:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35703 * 117.00189 * 2 1 4 4 N 1.32329 * 119.65301 * 0.02562 * 3 2 1 5 5 C 1.32317 * 121.58809 * 179.97438 * 4 3 2 6 6 O 1.35688 * 119.64060 * 179.97438 * 5 4 3 7 7 C 1.42903 * 117.00096 * 0.02562 * 6 5 4 8 8 C 1.38774 * 120.72052 * 0.28087 * 5 4 3 9 9 C 1.50698 * 120.37739 * 179.71977 * 8 5 4 10 10 N 1.46903 * 109.47255 * 79.99652 * 9 8 5 11 11 C 1.46908 * 110.99824 * 66.04743 * 10 9 8 12 12 C 1.46899 * 111.00269 * 190.00046 * 10 9 8 13 13 C 1.50703 * 109.47099 * 170.00034 * 12 10 9 14 14 H 1.07998 * 119.99987 * 0.02562 * 13 12 10 15 15 C 1.37877 * 120.00072 * 179.97438 * 13 12 10 16 16 N 1.31506 * 120.00054 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99837 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47227 * 89.99595 * 17 15 13 19 19 H 1.48501 * 109.46963 * 209.99871 * 17 15 13 20 20 H 1.48499 * 109.46980 * 329.99788 * 17 15 13 21 21 C 1.38562 * 119.24815 * 359.47209 * 8 5 4 22 22 C 1.38648 * 118.53095 * 0.51455 * 21 8 5 23 23 Cl 1.73599 * 120.38714 * 179.75225 * 22 21 8 24 24 H 1.08994 * 109.47412 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47291 * 300.00268 * 1 2 3 26 26 H 1.09008 * 109.46965 * 59.99512 * 1 2 3 27 27 H 1.09002 * 109.47382 * 179.97438 * 7 6 5 28 28 H 1.09001 * 109.46938 * 59.99669 * 7 6 5 29 29 H 1.09004 * 109.46926 * 299.99790 * 7 6 5 30 30 H 1.09002 * 109.47759 * 199.99665 * 9 8 5 31 31 H 1.08997 * 109.47505 * 320.00277 * 9 8 5 32 32 H 1.09001 * 109.47252 * 60.00118 * 11 10 9 33 33 H 1.08996 * 109.47086 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.46918 * 300.00325 * 11 10 9 35 35 H 1.08996 * 109.47314 * 290.00033 * 12 10 9 36 36 H 1.08995 * 109.47158 * 50.00515 * 12 10 9 37 37 H 0.97005 * 120.00081 * 180.02562 * 16 15 13 38 38 H 1.07997 * 120.73427 * 180.23919 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 7 1.3177 2.3145 0.0005 5 6 1.8783 3.5131 0.0010 6 8 1.0943 4.6206 0.0010 7 6 -0.3198 4.4145 0.0010 8 6 3.2592 3.6498 -0.0048 9 6 3.8895 5.0187 -0.0105 10 7 3.8812 5.5673 1.3522 11 6 4.7522 4.7852 2.2399 12 6 4.2668 6.9848 1.3515 13 6 4.0126 7.5752 2.7145 14 1 3.6057 6.9590 3.5026 15 6 4.3005 8.9019 2.9557 16 7 4.0782 9.4173 4.1450 17 14 5.0050 9.9675 1.5927 18 1 3.8954 10.6027 0.8374 19 1 5.8681 11.0212 2.1843 20 1 5.8115 9.1256 0.6730 21 6 4.0521 2.5134 -0.0001 22 6 3.4320 1.2733 -0.0005 23 17 4.3787 -0.1818 -0.0012 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.8276 5.3790 0.0015 28 1 -0.6052 3.8536 0.8910 29 1 -0.6052 3.8537 -0.8890 30 1 4.9173 4.9441 -0.3658 31 1 3.3238 5.6764 -0.6703 32 1 5.7735 4.8088 1.8598 33 1 4.7279 5.2132 3.2420 34 1 4.4018 3.7537 2.2762 35 1 5.3258 7.0731 1.1090 36 1 3.6778 7.5212 0.6076 37 1 4.2804 10.3507 4.3146 38 1 5.1292 2.5920 -0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249808237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:46:55 Heat of formation + Delta-G solvation = -28.708250 kcal Electronic energy + Delta-G solvation = -22472.028601 eV Core-core repulsion = 18956.165813 eV Total energy + Delta-G solvation = -3515.862788 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.09071 -39.01947 -37.55340 -36.66544 -36.22643 -32.95953 -32.08166 -30.74736 -28.12967 -27.90407 -27.08616 -26.06914 -23.93889 -23.10734 -21.83965 -20.15177 -18.98507 -18.11506 -16.87720 -16.52427 -16.47861 -15.68320 -15.54541 -15.06990 -14.67365 -14.26142 -14.23175 -13.85021 -13.62776 -13.46569 -13.14712 -12.42636 -12.22682 -12.12659 -12.06381 -11.84465 -11.61635 -11.57392 -11.26696 -11.09696 -10.91632 -10.57547 -10.47534 -10.39352 -10.04961 -9.85353 -9.65355 -9.27328 -8.55238 -8.03193 -7.34963 -6.03296 -4.00304 1.00404 1.06683 2.06784 2.78408 3.13638 3.29645 3.36996 3.38607 3.52236 4.09855 4.43414 4.65377 4.86743 4.93960 5.07600 5.10017 5.11514 5.26956 5.29916 5.33552 5.38987 5.40905 5.62734 5.72623 5.88176 6.08882 6.10883 6.22030 6.28169 6.70296 6.72527 6.87604 7.00205 7.26102 7.56799 7.60868 7.90422 8.04915 8.67598 9.05695 9.58368 11.09895 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.004001 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.513471 B = 6997.064907 C = 7779.795116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.296 6.296 3 C 0.366 3.634 4 N -0.584 5.584 5 C 0.388 3.612 6 O -0.275 6.275 7 C 0.039 3.961 8 C -0.159 4.159 9 C 0.106 3.894 10 N -0.522 5.522 11 C 0.035 3.965 12 C 0.163 3.837 13 C -0.506 4.506 14 H 0.080 0.920 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.874 3.126 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.268 1.268 21 C 0.001 3.999 22 C -0.149 4.149 23 Cl -0.053 7.053 24 H 0.097 0.903 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.084 0.916 32 H 0.012 0.988 33 H 0.080 0.920 34 H 0.045 0.955 35 H -0.011 1.011 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.335 -17.671 -11.431 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.202 6.202 3 C 0.187 3.813 4 N -0.324 5.324 5 C 0.209 3.791 6 O -0.180 6.180 7 C -0.056 4.056 8 C -0.162 4.162 9 C -0.022 4.022 10 N -0.246 5.246 11 C -0.113 4.113 12 C 0.037 3.963 13 C -0.545 4.545 14 H 0.098 0.902 15 C -0.133 4.133 16 N -0.541 5.541 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.193 1.193 21 C -0.025 4.025 22 C -0.179 4.179 23 Cl -0.024 7.024 24 H 0.115 0.885 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.031 0.969 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.007 0.993 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.475 -17.679 -11.141 21.877 hybrid contribution 1.547 0.608 -0.865 1.874 sum -4.928 -17.070 -12.007 21.444 Atomic orbital electron populations 1.22884 0.77067 1.03036 1.02544 1.86321 1.22951 1.23597 1.87360 1.18901 0.87361 0.84168 0.90919 1.66981 1.40231 0.98175 1.27033 1.19236 0.88493 0.83432 0.87964 1.86474 1.19104 1.26292 1.86102 1.22900 0.77795 1.03116 1.01828 1.19772 0.90226 0.97148 1.09102 1.20783 0.97747 0.90386 0.93316 1.61953 1.52977 1.04171 1.05488 1.22277 0.93028 0.96727 0.99297 1.20185 0.93457 0.83860 0.98773 1.21021 1.42130 0.95582 0.95738 0.90168 1.24887 0.95384 0.97711 0.95336 1.69892 1.48983 1.13971 1.21207 0.86878 0.79603 0.80617 0.82751 1.20142 1.21275 1.19253 1.21107 1.00893 0.88310 0.92199 1.20460 0.88934 0.89525 1.18955 1.98346 1.71367 1.35269 1.97449 0.88484 0.92117 0.92295 0.88242 0.92307 0.92749 0.94592 0.89754 0.96927 0.90094 0.93631 0.99347 0.95650 0.92707 0.82824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.40 16 2 O -0.30 -3.64 9.94 -18.81 -0.19 -3.83 16 3 C 0.37 5.05 7.48 -17.11 -0.13 4.92 16 4 N -0.58 -8.35 8.06 -13.38 -0.11 -8.46 16 5 C 0.39 6.03 7.46 -17.14 -0.13 5.90 16 6 O -0.28 -4.36 9.71 -18.77 -0.18 -4.54 16 7 C 0.04 0.46 10.38 101.05 1.05 1.51 16 8 C -0.16 -2.42 4.60 -104.30 -0.48 -2.90 16 9 C 0.11 1.80 4.77 -4.98 -0.02 1.77 16 10 N -0.52 -10.85 4.74 -245.82 -1.17 -12.02 16 11 C 0.04 0.68 9.10 60.07 0.55 1.22 16 12 C 0.16 3.92 3.79 -4.98 -0.02 3.90 16 13 C -0.51 -14.32 9.01 -34.44 -0.31 -14.63 16 14 H 0.08 2.48 7.37 -52.49 -0.39 2.10 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 17 Si 0.87 21.33 27.47 -169.99 -4.67 16.66 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 21 C 0.00 0.01 8.67 -39.31 -0.34 -0.33 16 22 C -0.15 -1.99 6.36 -39.20 -0.25 -2.24 16 23 Cl -0.05 -0.64 28.53 -51.86 -1.48 -2.11 16 24 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 26 H 0.06 0.50 8.10 -51.92 -0.42 0.08 16 27 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.05 0.56 8.10 -51.93 -0.42 0.13 16 30 H 0.04 0.56 8.01 -51.93 -0.42 0.14 16 31 H 0.08 1.43 7.65 -51.93 -0.40 1.03 16 32 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 1.74 6.76 -51.93 -0.35 1.39 16 34 H 0.04 0.78 6.64 -51.93 -0.35 0.44 16 35 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 36 H 0.03 0.61 7.36 -51.93 -0.38 0.23 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 334.82 15.07 5.05 5.05 Total: -1.00 -31.67 334.82 -6.30 -37.97 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -5.19 Total: -4.32 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 0.87 Total: 2.38 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.50 Total: -47.25 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.37 Total: -8.37 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.67 -6.30 -37.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249808237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.261 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds