Wall clock time and date at job start Fri Apr 10 2020 20:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35703 * 117.00189 * 2 1 4 4 N 1.32329 * 119.65301 * 0.02562 * 3 2 1 5 5 C 1.32317 * 121.58809 * 179.97438 * 4 3 2 6 6 O 1.35688 * 119.64060 * 179.97438 * 5 4 3 7 7 C 1.42903 * 117.00096 * 0.02562 * 6 5 4 8 8 C 1.38774 * 120.72052 * 0.28087 * 5 4 3 9 9 C 1.50698 * 120.37739 * 179.71977 * 8 5 4 10 10 N 1.46903 * 109.47255 * 79.99652 * 9 8 5 11 11 C 1.46908 * 110.99824 * 66.04743 * 10 9 8 12 12 C 1.46899 * 111.00269 * 190.00046 * 10 9 8 13 13 C 1.50703 * 109.47099 * 170.00034 * 12 10 9 14 14 H 1.07998 * 119.99987 * 0.02562 * 13 12 10 15 15 C 1.37877 * 120.00072 * 179.97438 * 13 12 10 16 16 N 1.31506 * 120.00054 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99837 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47227 * 89.99595 * 17 15 13 19 19 H 1.48501 * 109.46963 * 209.99871 * 17 15 13 20 20 H 1.48499 * 109.46980 * 329.99788 * 17 15 13 21 21 C 1.38562 * 119.24815 * 359.47209 * 8 5 4 22 22 C 1.38648 * 118.53095 * 0.51455 * 21 8 5 23 23 Cl 1.73599 * 120.38714 * 179.75225 * 22 21 8 24 24 H 1.08994 * 109.47412 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47291 * 300.00268 * 1 2 3 26 26 H 1.09008 * 109.46965 * 59.99512 * 1 2 3 27 27 H 1.09002 * 109.47382 * 179.97438 * 7 6 5 28 28 H 1.09001 * 109.46938 * 59.99669 * 7 6 5 29 29 H 1.09004 * 109.46926 * 299.99790 * 7 6 5 30 30 H 1.09002 * 109.47759 * 199.99665 * 9 8 5 31 31 H 1.08997 * 109.47505 * 320.00277 * 9 8 5 32 32 H 1.09001 * 109.47252 * 60.00118 * 11 10 9 33 33 H 1.08996 * 109.47086 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.46918 * 300.00325 * 11 10 9 35 35 H 1.08996 * 109.47314 * 290.00033 * 12 10 9 36 36 H 1.08995 * 109.47158 * 50.00515 * 12 10 9 37 37 H 0.97005 * 120.00081 * 180.02562 * 16 15 13 38 38 H 1.07997 * 120.73427 * 180.23919 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 7 1.3177 2.3145 0.0005 5 6 1.8783 3.5131 0.0010 6 8 1.0943 4.6206 0.0010 7 6 -0.3198 4.4145 0.0010 8 6 3.2592 3.6498 -0.0048 9 6 3.8895 5.0187 -0.0105 10 7 3.8812 5.5673 1.3522 11 6 4.7522 4.7852 2.2399 12 6 4.2668 6.9848 1.3515 13 6 4.0126 7.5752 2.7145 14 1 3.6057 6.9590 3.5026 15 6 4.3005 8.9019 2.9557 16 7 4.0782 9.4173 4.1450 17 14 5.0050 9.9675 1.5927 18 1 3.8954 10.6027 0.8374 19 1 5.8681 11.0212 2.1843 20 1 5.8115 9.1256 0.6730 21 6 4.0521 2.5134 -0.0001 22 6 3.4320 1.2733 -0.0005 23 17 4.3787 -0.1818 -0.0012 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.8276 5.3790 0.0015 28 1 -0.6052 3.8536 0.8910 29 1 -0.6052 3.8537 -0.8890 30 1 4.9173 4.9441 -0.3658 31 1 3.3238 5.6764 -0.6703 32 1 5.7735 4.8088 1.8598 33 1 4.7279 5.2132 3.2420 34 1 4.4018 3.7537 2.2762 35 1 5.3258 7.0731 1.1090 36 1 3.6778 7.5212 0.6076 37 1 4.2804 10.3507 4.3146 38 1 5.1292 2.5920 -0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249808237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:46:54 Heat of formation + Delta-G solvation = -53.304462 kcal Electronic energy + Delta-G solvation = -22473.095173 eV Core-core repulsion = 18956.165813 eV Total energy + Delta-G solvation = -3516.929360 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.14937 -40.03053 -38.75753 -37.94132 -37.32982 -34.78457 -33.56169 -31.88922 -29.81106 -28.93750 -28.31750 -27.21306 -25.47358 -24.14883 -23.25018 -21.81083 -19.99215 -19.14166 -18.96487 -17.55321 -17.52847 -16.96013 -16.57786 -16.32644 -16.01178 -15.97971 -15.76458 -14.95659 -14.67176 -14.63268 -14.44243 -14.32016 -13.59606 -13.36702 -13.13306 -13.00687 -12.91204 -12.66544 -12.55879 -12.39515 -12.33808 -12.16930 -11.96663 -11.85598 -11.52353 -11.45393 -11.03507 -10.75799 -10.72279 -9.13625 -8.91967 -8.23939 -6.26969 -0.07170 -0.00153 1.05664 1.38991 1.40130 1.50761 1.84595 2.13397 2.38481 2.42069 3.08359 3.09869 3.39774 3.63287 3.88210 3.97836 4.21340 4.39924 4.40172 4.43212 4.43515 4.47663 4.62389 4.67327 4.70844 4.73977 4.74811 4.85326 5.02303 5.08893 5.11890 5.23046 5.57777 5.76324 6.01247 6.23758 6.39669 6.49927 6.69535 6.79238 7.36447 8.92857 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.004001 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.513471 B = 6997.064907 C = 7779.795116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.302 6.302 3 C 0.362 3.638 4 N -0.585 5.585 5 C 0.376 3.624 6 O -0.300 6.300 7 C 0.036 3.964 8 C -0.175 4.175 9 C 0.112 3.888 10 N -0.541 5.541 11 C 0.043 3.957 12 C 0.174 3.826 13 C -0.513 4.513 14 H 0.034 0.966 15 C 0.007 3.993 16 N -0.951 5.951 17 Si 0.947 3.053 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.247 1.247 21 C 0.011 3.989 22 C -0.154 4.154 23 Cl -0.040 7.040 24 H 0.127 0.873 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.045 0.955 34 H 0.064 0.936 35 H -0.006 1.006 36 H 0.030 0.970 37 H 0.266 0.734 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 -18.738 -13.644 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.208 6.208 3 C 0.182 3.818 4 N -0.325 5.325 5 C 0.197 3.803 6 O -0.205 6.205 7 C -0.059 4.059 8 C -0.179 4.179 9 C -0.016 4.016 10 N -0.266 5.266 11 C -0.105 4.105 12 C 0.047 3.953 13 C -0.551 4.551 14 H 0.053 0.947 15 C -0.190 4.190 16 N -0.592 5.592 17 Si 0.771 3.229 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.171 1.171 21 C -0.014 4.014 22 C -0.184 4.184 23 Cl -0.012 7.012 24 H 0.145 0.855 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.132 0.868 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.011 0.989 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.935 -18.787 -13.369 23.810 hybrid contribution 1.262 0.758 -0.116 1.477 sum -4.672 -18.029 -13.485 22.994 Atomic orbital electron populations 1.23146 0.75307 1.05060 1.02464 1.86329 1.24725 1.22789 1.86967 1.19157 0.87842 0.84496 0.90311 1.66981 1.40287 0.98004 1.27244 1.19404 0.88805 0.83736 0.88364 1.86433 1.20803 1.27056 1.86254 1.23087 0.76209 1.04235 1.02348 1.19677 0.90344 0.96841 1.11054 1.20735 0.99052 0.91055 0.90750 1.61801 1.53617 1.02870 1.08264 1.22155 0.93928 0.97122 0.97281 1.19926 0.93574 0.85906 0.95887 1.21256 1.41440 0.95539 0.96878 0.94731 1.25841 0.95806 0.99302 0.98023 1.70057 1.50726 1.14584 1.23825 0.85715 0.79189 0.78552 0.79481 1.19083 1.21002 1.17051 1.21297 1.01774 0.87630 0.90717 1.20566 0.89096 0.90103 1.18662 1.98350 1.70939 1.34483 1.97378 0.85470 0.92555 0.91984 0.86811 0.92630 0.91312 0.92502 0.90061 0.95246 0.93611 0.91693 0.98884 0.95240 0.92538 0.80700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.38 113.37 1.18 1.72 16 2 O -0.30 -6.87 9.94 -90.24 -0.90 -7.77 16 3 C 0.36 9.40 7.48 84.76 0.63 10.04 16 4 N -0.58 -16.06 8.06 -421.88 -3.40 -19.46 16 5 C 0.38 11.34 7.46 84.75 0.63 11.98 16 6 O -0.30 -9.38 9.71 -90.06 -0.87 -10.26 16 7 C 0.04 0.82 10.38 113.37 1.18 1.99 16 8 C -0.18 -5.08 4.60 -19.66 -0.09 -5.17 16 9 C 0.11 3.58 4.77 85.56 0.41 3.99 16 10 N -0.54 -22.18 4.74 -931.64 -4.42 -26.60 16 11 C 0.04 1.64 9.10 127.69 1.16 2.81 16 12 C 0.17 8.22 3.79 85.56 0.32 8.54 16 13 C -0.51 -29.69 9.01 25.60 0.23 -29.46 16 14 H 0.03 2.25 7.37 -2.91 -0.02 2.23 16 15 C 0.01 0.41 5.47 84.66 0.46 0.88 16 16 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 17 Si 0.95 43.63 27.47 68.60 1.88 45.52 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16 21 C 0.01 0.27 8.67 22.45 0.19 0.47 16 22 C -0.15 -3.81 6.36 22.51 0.14 -3.67 16 23 Cl -0.04 -0.88 28.53 -2.72 -0.08 -0.95 16 24 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 26 H 0.06 0.95 8.10 -2.38 -0.02 0.93 16 27 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 29 H 0.07 1.33 8.10 -2.38 -0.02 1.31 16 30 H 0.06 1.58 8.01 -2.39 -0.02 1.56 16 31 H 0.08 2.63 7.65 -2.39 -0.02 2.61 16 32 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 2.03 6.76 -2.39 -0.02 2.01 16 34 H 0.06 2.17 6.64 -2.39 -0.02 2.15 16 35 H -0.01 -0.30 7.18 -2.39 -0.02 -0.32 16 36 H 0.03 1.37 7.36 -2.39 -0.02 1.35 16 37 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 38 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -69.30 334.82 -0.02 -69.33 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: 1.01 Total: 5.46 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 6.46 Total: 4.12 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -7.52 Total: -105.45 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -1.77 Total: -18.02 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.52 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.95 kcal Total: -69.30 -0.02 -69.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249808237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.022 kcal (2) G-P(sol) polarization free energy of solvation -69.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds