Wall clock time and date at job start Fri Apr 10 2020 20:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00108 * 2 1 4 4 H 1.48498 * 109.47445 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46832 * 300.00587 * 3 2 1 6 6 H 1.48501 * 109.47087 * 60.00152 * 3 2 1 7 7 C 1.37873 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00318 * 185.05079 * 7 2 1 9 9 C 1.50701 * 119.99912 * 5.05242 * 7 2 1 10 10 H 1.08996 * 109.47152 * 32.97202 * 9 7 2 11 11 C 1.50702 * 109.47085 * 152.97204 * 9 7 2 12 12 O 1.21278 * 120.00106 * 120.00481 * 11 9 7 13 13 N 1.34776 * 120.00254 * 299.99781 * 11 9 7 14 14 C 1.39504 * 120.00422 * 184.98271 * 13 11 9 15 15 C 1.39015 * 119.67023 * 174.27112 * 14 13 11 16 16 C 1.38357 * 119.12725 * 179.97438 * 15 14 13 17 17 C 1.39009 * 118.47658 * 0.24993 * 16 15 14 18 18 F 1.35102 * 120.37575 * 179.74804 * 17 16 15 19 19 C 1.38291 * 119.25733 * 359.50459 * 17 16 15 20 20 N 1.31938 * 120.81373 * 0.51111 * 19 17 16 21 21 C 1.50700 * 109.46966 * 272.97167 * 9 7 2 22 22 C 1.38233 * 119.99803 * 306.76260 * 21 9 7 23 23 C 1.38240 * 119.99397 * 179.78782 * 22 21 9 24 24 C 1.38233 * 120.00321 * 0.44245 * 23 22 21 25 25 C 1.38234 * 119.99879 * 359.81617 * 24 23 22 26 26 C 1.38231 * 119.99884 * 127.03719 * 21 9 7 27 27 H 0.97006 * 119.99801 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99455 * 4.97772 * 13 11 9 29 29 H 1.08001 * 120.43572 * 0.02562 * 15 14 13 30 30 H 1.07999 * 120.76607 * 179.97438 * 16 15 14 31 31 H 1.08000 * 119.59163 * 180.22825 * 19 17 16 32 32 H 1.08000 * 120.00335 * 359.97438 * 22 21 9 33 33 H 1.08011 * 119.99623 * 180.27507 * 23 22 21 34 34 H 1.08001 * 119.99941 * 179.83301 * 24 23 22 35 35 H 1.07998 * 120.00069 * 180.02562 * 25 24 23 36 36 H 1.08001 * 120.00489 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0818 9 6 1.2554 -2.4965 -0.1161 10 1 0.3723 -2.3538 -0.7388 11 6 2.1490 -3.5360 -0.7423 12 8 2.4170 -4.5508 -0.1346 13 7 2.6502 -3.3381 -1.9776 14 6 3.3912 -4.3434 -2.5992 15 6 3.8031 -4.1801 -3.9168 16 6 4.5379 -5.1840 -4.5221 17 6 4.8325 -6.3257 -3.7858 18 9 5.5432 -7.3319 -4.3405 19 6 4.3944 -6.4179 -2.4773 20 7 3.6953 -5.4428 -1.9284 21 6 0.8339 -2.9569 1.2556 22 6 1.7715 -3.0706 2.2649 23 6 1.3840 -3.4887 3.5243 24 6 0.0605 -3.8018 3.7718 25 6 -0.8761 -3.6932 2.7610 26 6 -0.4894 -3.2709 1.5028 27 1 -0.4850 0.8401 0.0004 28 1 2.4955 -2.4965 -2.4345 29 1 3.5535 -3.2809 -4.4606 30 1 4.8711 -5.0850 -5.5446 31 1 4.6234 -7.3008 -1.8991 32 1 2.8062 -2.8299 2.0704 33 1 2.1158 -3.5733 4.3142 34 1 -0.2417 -4.1310 4.7550 35 1 -1.9102 -3.9375 2.9545 36 1 -1.2213 -3.1859 0.7132 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001359885607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:47:40 Heat of formation + Delta-G solvation = -10.484121 kcal Electronic energy + Delta-G solvation = -23234.349481 eV Core-core repulsion = 19598.249496 eV Total energy + Delta-G solvation = -3636.099986 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.81375 -40.43975 -38.88706 -37.63498 -34.25504 -33.72884 -32.38884 -31.14295 -29.92476 -29.51221 -27.34342 -24.38428 -23.93156 -22.91041 -21.59069 -20.95022 -19.54260 -17.88179 -17.46991 -17.09684 -16.61690 -15.84167 -15.77733 -15.65254 -14.67613 -14.53312 -14.41504 -14.09994 -13.87931 -13.70333 -13.42684 -13.05891 -12.87282 -12.47216 -12.44146 -12.28067 -11.73275 -11.63804 -11.10868 -11.07624 -10.47238 -10.31629 -10.22672 -10.10968 -9.90833 -9.56929 -9.45702 -8.80590 -8.55476 -7.93288 -7.90147 -7.61667 -6.34919 -4.44169 1.03952 1.20874 2.38738 2.40900 3.12638 3.22245 3.24697 3.38317 3.40663 3.99283 4.17981 4.22196 4.53345 4.73749 4.81933 4.92202 5.01715 5.24290 5.57065 5.73057 5.73470 5.80374 5.90348 5.91224 6.09759 6.19377 6.48662 6.50371 6.57989 6.79248 6.94315 7.02020 7.11915 7.38202 7.43819 7.54529 7.60814 7.69141 7.91850 8.04700 8.27768 8.59813 9.00241 9.23532 10.72737 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.004875 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.513365 B = 5742.176443 C = 7285.895523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.076 3.924 3 Si 0.897 3.103 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.525 4.525 8 H 0.065 0.935 9 C 0.058 3.942 10 H 0.085 0.915 11 C 0.516 3.484 12 O -0.491 6.491 13 N -0.654 5.654 14 C 0.369 3.631 15 C -0.191 4.191 16 C -0.079 4.079 17 C -0.010 4.010 18 F -0.140 7.140 19 C 0.113 3.887 20 N -0.452 5.452 21 C -0.009 4.009 22 C -0.084 4.084 23 C -0.134 4.134 24 C -0.147 4.147 25 C -0.132 4.132 26 C -0.112 4.112 27 H 0.267 0.733 28 H 0.425 0.575 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.165 0.835 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.149 -5.966 -6.168 9.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.130 4.130 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.562 4.562 8 H 0.083 0.917 9 C 0.037 3.963 10 H 0.103 0.897 11 C 0.305 3.695 12 O -0.361 6.361 13 N -0.299 5.299 14 C 0.136 3.864 15 C -0.215 4.215 16 C -0.105 4.105 17 C -0.033 4.033 18 F -0.119 7.119 19 C -0.047 4.047 20 N -0.167 5.167 21 C -0.010 4.010 22 C -0.102 4.102 23 C -0.153 4.153 24 C -0.165 4.165 25 C -0.151 4.151 26 C -0.131 4.131 27 H 0.077 0.923 28 H 0.263 0.737 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.182 0.818 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.794 -6.595 -4.770 8.980 hybrid contribution 0.713 1.415 -1.134 1.948 sum 4.507 -5.180 -5.904 9.056 Atomic orbital electron populations 1.69944 1.06012 1.27454 1.47193 1.24964 0.94877 0.99443 0.93686 0.86437 0.80201 0.82971 0.77948 1.19466 1.20626 1.20714 1.20725 0.93267 0.88312 1.53937 0.91699 1.18106 0.95817 0.91607 0.90817 0.89701 1.22056 0.80016 0.88047 0.79336 1.90710 1.56930 1.28560 1.59883 1.44042 1.50682 1.16407 1.18796 1.18855 0.90396 0.88565 0.88573 1.21435 1.03802 1.01745 0.94508 1.21317 0.96904 0.91763 1.00549 1.18671 1.01795 0.88225 0.94631 1.91470 1.76341 1.58567 1.85516 1.22840 0.93313 0.97851 0.90735 1.67884 1.13039 1.00203 1.35548 1.19902 0.92470 0.92094 0.96533 1.20812 0.99353 0.97760 0.92285 1.20942 0.95697 1.01711 0.96914 1.20797 0.93769 1.03647 0.98301 1.20888 0.98349 1.01952 0.93868 1.20936 0.96073 0.99520 0.96531 0.92301 0.73720 0.83690 0.83726 0.81812 0.87134 0.87616 0.87741 0.87597 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.18 12.98 55.43 0.72 -21.46 16 2 C 0.08 1.85 5.45 -17.82 -0.10 1.75 16 3 Si 0.90 19.13 29.54 -169.99 -5.02 14.10 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.52 -12.50 7.38 -34.44 -0.25 -12.76 16 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.06 1.31 2.25 -94.07 -0.21 1.10 16 10 H 0.09 2.01 7.38 -51.93 -0.38 1.63 16 11 C 0.52 11.10 7.00 -10.98 -0.08 11.02 16 12 O -0.49 -11.72 13.71 5.56 0.08 -11.65 16 13 N -0.65 -11.61 5.31 -11.41 -0.06 -11.67 16 14 C 0.37 6.10 7.42 -154.64 -1.15 4.96 16 15 C -0.19 -2.38 9.94 -39.25 -0.39 -2.77 16 16 C -0.08 -0.90 10.15 -39.25 -0.40 -1.30 16 17 C -0.01 -0.13 7.34 -39.28 -0.29 -0.42 16 18 F -0.14 -1.77 17.28 2.25 0.04 -1.73 16 19 C 0.11 1.66 11.16 -17.49 -0.20 1.46 16 20 N -0.45 -8.21 7.89 -12.30 -0.10 -8.30 16 21 C -0.01 -0.21 4.29 -104.63 -0.45 -0.65 16 22 C -0.08 -1.88 8.35 -39.58 -0.33 -2.21 16 23 C -0.13 -2.67 10.05 -39.58 -0.40 -3.07 16 24 C -0.15 -2.75 10.05 -39.58 -0.40 -3.15 16 25 C -0.13 -2.57 10.05 -39.58 -0.40 -2.97 16 26 C -0.11 -2.44 9.67 -39.58 -0.38 -2.82 16 27 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 28 H 0.42 6.54 8.51 -40.82 -0.35 6.20 16 29 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.11 2.51 7.87 -52.49 -0.41 2.10 16 33 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 34 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.11 2.30 7.96 -52.49 -0.42 1.88 16 LS Contribution 324.78 15.07 4.89 4.89 Total: -1.00 -29.30 324.78 -8.51 -37.81 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -3.64 Total: 9.82 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -5.41 Total: -11.82 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.56 Total: -41.44 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.30 -8.51 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001359885607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.324 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds