Wall clock time and date at job start Fri Apr 10 2020 20:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99861 * 2 1 4 4 H 1.48501 * 109.46781 * 239.99810 * 3 2 1 5 5 H 1.48498 * 109.47034 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47425 * 119.99960 * 3 2 1 7 7 C 1.37872 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00056 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99928 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47029 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47160 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47243 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99967 * 180.02562 * 12 11 10 14 14 O 1.21584 * 119.99740 * 359.97438 * 13 12 11 15 15 N 1.34772 * 119.99726 * 179.97438 * 13 12 11 16 16 N 1.40102 * 120.00462 * 0.02562 * 15 13 12 17 17 C 1.39287 * 120.00445 * 180.02562 * 16 15 13 18 18 N 1.32325 * 119.68720 * 359.97438 * 17 16 15 19 19 C 1.32005 * 121.67040 * 180.02562 * 18 17 16 20 20 C 1.38235 * 120.85970 * 359.97438 * 19 18 17 21 21 F 1.35095 * 120.34756 * 180.02562 * 20 19 18 22 22 C 1.39011 * 119.29652 * 0.02562 * 20 19 18 23 23 C 1.38495 * 118.47026 * 0.02562 * 22 20 19 24 24 F 1.35097 * 120.46065 * 179.97438 * 23 22 20 25 25 H 0.96997 * 120.00301 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46665 * 60.00319 * 9 7 2 27 27 H 1.08994 * 109.46941 * 300.00086 * 9 7 2 28 28 H 1.09011 * 109.46545 * 60.00144 * 10 9 7 29 29 H 1.08999 * 109.47401 * 300.00723 * 10 9 7 30 30 H 1.08997 * 109.46915 * 60.00307 * 11 10 9 31 31 H 1.09007 * 109.47249 * 300.00254 * 11 10 9 32 32 H 0.96996 * 119.99634 * 359.97438 * 12 11 10 33 33 H 0.97003 * 120.00114 * 179.97438 * 15 13 12 34 34 H 0.97003 * 119.99424 * 359.97438 * 16 15 13 35 35 H 1.08001 * 119.57054 * 180.27231 * 19 18 17 36 36 H 1.08005 * 120.76700 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4803 -4.9871 0.0020 12 7 2.4323 -6.1006 0.0024 13 6 1.9831 -7.3713 0.0024 14 8 0.7877 -7.5934 0.0025 15 7 2.8589 -8.3956 0.0022 16 7 4.2363 -8.1397 0.0026 17 6 5.1415 -9.1983 0.0018 18 7 4.6937 -10.4435 0.0013 19 6 5.5163 -11.4759 0.0011 20 6 6.8862 -11.2910 0.0009 21 9 7.7186 -12.3550 0.0002 22 6 7.3981 -9.9985 0.0015 23 6 6.5094 -8.9364 0.0028 24 9 6.9629 -7.6638 0.0039 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5575 -0.8881 27 1 0.6247 -2.5563 0.8919 28 1 2.8726 -3.6038 0.8911 29 1 2.8713 -3.6047 -0.8890 30 1 0.8533 -5.0450 -0.8877 31 1 0.8540 -5.0447 0.8923 32 1 3.3859 -5.9233 0.0019 33 1 2.5356 -9.3102 0.0025 34 1 4.5596 -7.2251 0.0026 35 1 5.1138 -12.4781 -0.0038 36 1 8.4644 -9.8266 0.0018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297666708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:00 Heat of formation + Delta-G solvation = -46.715426 kcal Electronic energy + Delta-G solvation = -22810.829620 eV Core-core repulsion = 18774.682053 eV Total energy + Delta-G solvation = -4036.147567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.50862 -49.37771 -40.84054 -39.94801 -36.75424 -35.58214 -33.38094 -32.81476 -32.34172 -31.03283 -28.75433 -26.75318 -24.67302 -23.63252 -23.30599 -21.07963 -20.76551 -19.29246 -19.13889 -18.59295 -17.90036 -16.78751 -16.62352 -16.36809 -16.14626 -15.86941 -15.73976 -15.27576 -15.11272 -14.57432 -14.51809 -14.47557 -14.14410 -13.97464 -13.74207 -12.89864 -12.32093 -12.30677 -11.88983 -11.75792 -10.91827 -10.81955 -10.69083 -10.57033 -10.42413 -10.41288 -9.93195 -9.77868 -9.51472 -9.18143 -8.98545 -8.39920 -7.88894 -6.04571 -4.08056 0.24771 0.40427 1.44616 2.79343 2.84813 3.08922 3.26147 3.30090 3.35155 3.36816 3.47244 3.64493 4.01455 4.26021 4.41782 4.63544 4.95268 5.08830 5.18058 5.31171 5.53343 5.70888 5.72605 6.03689 6.08236 6.30617 6.52703 6.53976 6.79979 6.87689 6.93433 7.20723 7.59353 7.71504 7.92494 7.93493 8.33465 8.40428 8.98224 9.56284 11.06619 Molecular weight = 300.11amu Principal moments of inertia in cm(-1) A = 0.024214 B = 0.002428 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.087557 B =11530.069139 C =12660.407268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.132 3.868 12 N -0.738 5.738 13 C 0.709 3.291 14 O -0.569 6.569 15 N -0.528 5.528 16 N -0.513 5.513 17 C 0.381 3.619 18 N -0.495 5.495 19 C 0.129 3.871 20 C 0.013 3.987 21 F -0.127 7.127 22 C -0.092 4.092 23 C 0.017 3.983 24 F -0.122 7.122 25 H 0.262 0.738 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.388 0.612 33 H 0.441 0.559 34 H 0.437 0.563 35 H 0.179 0.821 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.777 -23.596 0.002 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.160 4.160 11 C 0.009 3.991 12 N -0.394 5.394 13 C 0.408 3.592 14 O -0.443 6.443 15 N -0.285 5.285 16 N -0.246 5.246 17 C 0.142 3.858 18 N -0.213 5.213 19 C -0.031 4.031 20 C -0.012 4.012 21 F -0.106 7.106 22 C -0.119 4.119 23 C -0.011 4.011 24 F -0.101 7.101 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.222 0.778 33 H 0.287 0.713 34 H 0.282 0.718 35 H 0.196 0.804 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 13.605 -23.540 0.002 27.189 hybrid contribution 2.170 1.227 0.000 2.493 sum 15.775 -22.313 0.002 27.326 Atomic orbital electron populations 1.69950 1.06053 1.26864 1.50335 1.25027 0.94867 0.99312 0.95227 0.86635 0.79559 0.83070 0.78588 1.20244 1.21255 1.20240 1.21149 0.92943 0.90916 1.51235 0.92695 1.19022 0.93804 0.90706 0.97774 1.21918 0.99898 0.93223 1.00935 1.21642 0.91188 0.83876 1.02390 1.45469 1.10355 1.04647 1.78955 1.15805 0.84295 0.80569 0.78510 1.91041 1.12045 1.82513 1.58669 1.44616 0.91744 1.10210 1.81927 1.43123 0.94412 1.06432 1.80584 1.18201 0.85093 0.87765 0.94720 1.67226 1.37856 0.96643 1.19526 1.22649 0.87683 0.98372 0.94352 1.18124 0.88895 0.83642 1.10571 1.91539 1.70965 1.53651 1.94411 1.21413 1.01862 0.90051 0.98622 1.17412 0.89774 0.80529 1.13386 1.91557 1.89182 1.34894 1.94459 0.92823 0.96172 0.96167 0.92657 0.92661 0.91437 0.91443 0.77794 0.71262 0.71805 0.80393 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 11 C 0.13 2.22 5.67 -4.04 -0.02 2.20 16 12 N -0.74 -10.12 5.52 -65.23 -0.36 -10.48 16 13 C 0.71 10.37 8.68 -86.92 -0.75 9.62 16 14 O -0.57 -10.63 17.18 5.29 0.09 -10.53 16 15 N -0.53 -5.96 6.29 27.63 0.17 -5.79 16 16 N -0.51 -4.70 6.43 31.20 0.20 -4.50 16 17 C 0.38 3.29 7.60 -154.75 -1.18 2.11 16 18 N -0.50 -4.14 9.37 -12.29 -0.12 -4.26 16 19 C 0.13 0.81 11.16 -17.48 -0.20 0.61 16 20 C 0.01 0.08 7.34 -39.30 -0.29 -0.21 16 21 F -0.13 -0.87 17.28 2.25 0.04 -0.83 16 22 C -0.09 -0.57 10.14 -39.20 -0.40 -0.96 16 23 C 0.02 0.13 7.35 -39.10 -0.29 -0.16 16 24 F -0.12 -0.98 16.65 2.25 0.04 -0.94 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 32 H 0.39 4.22 6.39 -40.82 -0.26 3.96 16 33 H 0.44 4.78 8.06 -182.59 -1.47 3.31 16 34 H 0.44 3.46 6.17 -182.59 -1.13 2.33 16 35 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.16 0.66 8.06 -52.48 -0.42 0.23 16 LS Contribution 327.25 15.07 4.93 4.93 Total: -1.00 -32.45 327.25 -8.88 -41.33 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.78 Total: 2.53 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -3.81 Total: -1.92 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.64 Total: -50.81 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.08 Total: -1.77 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.45 -8.88 -41.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297666708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.386 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds