Wall clock time and date at job start Fri Apr 10 2020 20:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99861 * 2 1 4 4 H 1.48501 * 109.46781 * 239.99810 * 3 2 1 5 5 H 1.48498 * 109.47034 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47425 * 119.99960 * 3 2 1 7 7 C 1.37872 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00056 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99928 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47029 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47160 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47243 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99967 * 180.02562 * 12 11 10 14 14 O 1.21584 * 119.99740 * 359.97438 * 13 12 11 15 15 N 1.34772 * 119.99726 * 179.97438 * 13 12 11 16 16 N 1.40102 * 120.00462 * 0.02562 * 15 13 12 17 17 C 1.39287 * 120.00445 * 180.02562 * 16 15 13 18 18 N 1.32325 * 119.68720 * 359.97438 * 17 16 15 19 19 C 1.32005 * 121.67040 * 180.02562 * 18 17 16 20 20 C 1.38235 * 120.85970 * 359.97438 * 19 18 17 21 21 F 1.35095 * 120.34756 * 180.02562 * 20 19 18 22 22 C 1.39011 * 119.29652 * 0.02562 * 20 19 18 23 23 C 1.38495 * 118.47026 * 0.02562 * 22 20 19 24 24 F 1.35097 * 120.46065 * 179.97438 * 23 22 20 25 25 H 0.96997 * 120.00301 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46665 * 60.00319 * 9 7 2 27 27 H 1.08994 * 109.46941 * 300.00086 * 9 7 2 28 28 H 1.09011 * 109.46545 * 60.00144 * 10 9 7 29 29 H 1.08999 * 109.47401 * 300.00723 * 10 9 7 30 30 H 1.08997 * 109.46915 * 60.00307 * 11 10 9 31 31 H 1.09007 * 109.47249 * 300.00254 * 11 10 9 32 32 H 0.96996 * 119.99634 * 359.97438 * 12 11 10 33 33 H 0.97003 * 120.00114 * 179.97438 * 15 13 12 34 34 H 0.97003 * 119.99424 * 359.97438 * 16 15 13 35 35 H 1.08001 * 119.57054 * 180.27231 * 19 18 17 36 36 H 1.08005 * 120.76700 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4803 -4.9871 0.0020 12 7 2.4323 -6.1006 0.0024 13 6 1.9831 -7.3713 0.0024 14 8 0.7877 -7.5934 0.0025 15 7 2.8589 -8.3956 0.0022 16 7 4.2363 -8.1397 0.0026 17 6 5.1415 -9.1983 0.0018 18 7 4.6937 -10.4435 0.0013 19 6 5.5163 -11.4759 0.0011 20 6 6.8862 -11.2910 0.0009 21 9 7.7186 -12.3550 0.0002 22 6 7.3981 -9.9985 0.0015 23 6 6.5094 -8.9364 0.0028 24 9 6.9629 -7.6638 0.0039 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5575 -0.8881 27 1 0.6247 -2.5563 0.8919 28 1 2.8726 -3.6038 0.8911 29 1 2.8713 -3.6047 -0.8890 30 1 0.8533 -5.0450 -0.8877 31 1 0.8540 -5.0447 0.8923 32 1 3.3859 -5.9233 0.0019 33 1 2.5356 -9.3102 0.0025 34 1 4.5596 -7.2251 0.0026 35 1 5.1138 -12.4781 -0.0038 36 1 8.4644 -9.8266 0.0018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297666708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:00 Heat of formation + Delta-G solvation = -68.485013 kcal Electronic energy + Delta-G solvation = -22811.773620 eV Core-core repulsion = 18774.682053 eV Total energy + Delta-G solvation = -4037.091567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.09020 -49.90973 -41.63097 -40.89304 -37.64744 -37.06303 -35.19992 -33.50523 -33.24664 -32.59207 -29.45395 -28.51721 -25.42763 -24.92984 -24.21021 -22.37525 -22.20834 -20.29398 -19.90120 -19.15905 -18.68472 -18.43818 -17.39214 -17.31092 -16.98818 -16.87966 -16.58080 -16.35767 -16.17528 -15.80505 -15.79042 -15.43189 -15.10034 -14.86114 -14.29716 -14.25043 -13.75718 -13.64462 -13.44167 -12.94620 -12.70741 -12.56060 -12.41578 -11.89522 -11.68017 -11.41564 -11.19838 -11.08598 -10.95674 -10.62696 -10.53636 -10.17222 -8.62557 -8.18462 -6.29749 -0.28167 -0.14819 0.63932 1.42514 1.45203 1.52985 1.77712 1.86521 2.35092 2.42731 2.67093 2.91381 2.97836 3.15424 3.52563 3.70472 4.04498 4.11841 4.22249 4.35303 4.51433 4.54561 4.72201 4.90376 4.95035 5.02722 5.16362 5.31842 5.44600 5.52448 5.72036 5.73365 5.85405 6.02921 6.23314 6.52486 6.87516 6.97795 7.28685 7.39759 8.93335 Molecular weight = 300.11amu Principal moments of inertia in cm(-1) A = 0.024214 B = 0.002428 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.087557 B =11530.069139 C =12660.407268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.103 4.103 11 C 0.146 3.854 12 N -0.727 5.727 13 C 0.710 3.290 14 O -0.614 6.614 15 N -0.515 5.515 16 N -0.515 5.515 17 C 0.368 3.632 18 N -0.511 5.511 19 C 0.130 3.870 20 C 0.017 3.983 21 F -0.127 7.127 22 C -0.085 4.085 23 C 0.014 3.986 24 F -0.126 7.126 25 H 0.263 0.737 26 H -0.006 1.006 27 H -0.006 1.006 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.405 0.595 33 H 0.445 0.555 34 H 0.442 0.558 35 H 0.205 0.795 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.545 -24.295 0.002 30.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.141 4.141 11 C 0.022 3.978 12 N -0.384 5.384 13 C 0.409 3.591 14 O -0.491 6.491 15 N -0.270 5.270 16 N -0.250 5.250 17 C 0.130 3.870 18 N -0.228 5.228 19 C -0.029 4.029 20 C -0.007 4.007 21 F -0.106 7.106 22 C -0.112 4.112 23 C -0.014 4.014 24 F -0.104 7.104 25 H 0.072 0.928 26 H 0.012 0.988 27 H 0.012 0.988 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.242 0.758 33 H 0.292 0.708 34 H 0.288 0.712 35 H 0.221 0.779 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 16.460 -24.285 0.002 29.338 hybrid contribution 1.396 1.291 0.000 1.902 sum 17.856 -22.994 0.002 29.113 Atomic orbital electron populations 1.70100 1.07901 1.27831 1.51647 1.26010 0.95737 1.03505 0.94854 0.85489 0.78195 0.78042 0.79244 1.19056 1.21283 1.19047 1.21653 0.93759 0.92003 1.50481 0.91500 1.18936 0.94438 0.92786 0.95252 1.21616 0.98544 0.91626 1.02270 1.21219 0.91193 0.84124 1.01263 1.45072 1.10728 1.03733 1.78840 1.15767 0.83991 0.80981 0.78343 1.91011 1.14196 1.83320 1.60615 1.44242 0.92836 1.09415 1.80461 1.43098 0.93046 1.07066 1.81753 1.18340 0.85332 0.87812 0.95497 1.67252 1.38650 0.96937 1.19960 1.23071 0.87699 0.98940 0.93173 1.18175 0.88939 0.83684 1.09951 1.91547 1.70985 1.53717 1.94358 1.21648 1.02847 0.89491 0.97226 1.17425 0.89425 0.80750 1.13800 1.91551 1.89150 1.35172 1.94562 0.92838 0.98791 0.98782 0.91224 0.91232 0.92712 0.92717 0.75844 0.70844 0.71239 0.77886 0.79706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.97 43.32 29.54 68.60 2.03 45.34 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.54 -29.65 9.11 25.60 0.23 -29.41 16 8 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.10 -3.78 5.27 30.59 0.16 -3.62 16 11 C 0.15 4.95 5.67 86.38 0.49 5.44 16 12 N -0.73 -19.34 5.52 -478.54 -2.64 -21.98 16 13 C 0.71 20.57 8.68 179.05 1.55 22.12 16 14 O -0.61 -23.30 17.18 -3.98 -0.07 -23.37 16 15 N -0.51 -11.22 6.29 -184.75 -1.16 -12.38 16 16 N -0.51 -8.76 6.43 -55.20 -0.35 -9.11 16 17 C 0.37 5.77 7.60 133.02 1.01 6.78 16 18 N -0.51 -7.70 9.37 -192.79 -1.81 -9.50 16 19 C 0.13 1.34 11.16 84.67 0.94 2.28 16 20 C 0.02 0.17 7.34 22.45 0.16 0.34 16 21 F -0.13 -1.42 17.28 44.97 0.78 -0.64 16 22 C -0.09 -0.83 10.14 22.52 0.23 -0.60 16 23 C 0.01 0.18 7.35 22.58 0.17 0.35 16 24 F -0.13 -1.78 16.65 44.97 0.75 -1.03 16 25 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 26 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 27 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 16 28 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.40 8.11 6.39 -92.71 -0.59 7.52 16 33 H 0.44 9.36 8.06 -213.32 -1.72 7.64 16 34 H 0.44 6.31 6.17 -213.32 -1.32 4.99 16 35 H 0.20 0.90 8.06 -2.91 -0.02 0.87 16 36 H 0.19 0.92 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -70.45 327.25 0.90 -69.54 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -2.46 Total: 14.15 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 5.56 Total: 5.30 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -5.68 Total: -109.30 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.07 Total: -23.37 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 1.53 Total: -1.67 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -70.45 0.90 -69.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297666708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.057 kcal (2) G-P(sol) polarization free energy of solvation -70.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds