Wall clock time and date at job start Fri Apr 10 2020 20:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86795 * 120.00097 * 2 1 4 4 H 1.48504 * 109.46953 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47436 * 300.00132 * 3 2 1 6 6 H 1.48499 * 109.47042 * 60.00203 * 3 2 1 7 7 C 1.38800 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99932 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00239 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47344 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47363 * 179.97438 * 11 10 9 13 13 O 1.45197 * 109.47432 * 179.97438 * 12 11 10 14 14 C 1.34231 * 117.00348 * 180.02562 * 13 12 11 15 15 O 1.20819 * 119.99670 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99988 * 179.97438 * 14 13 12 17 17 H 1.09002 * 115.55533 * 327.74601 * 16 14 13 18 18 C 1.53062 * 117.50694 * 182.03930 * 16 14 13 19 19 C 1.52696 * 59.93262 * 252.53133 * 18 16 14 20 20 C 1.53255 * 117.87893 * 107.77105 * 19 18 16 21 21 C 1.53326 * 108.48755 * 196.25264 * 20 19 18 22 22 O 1.42868 * 109.32427 * 306.03692 * 21 20 19 23 23 C 1.42867 * 114.52890 * 64.35896 * 22 21 20 24 24 C 1.53249 * 117.88395 * 252.22270 * 19 18 16 25 25 H 0.96999 * 119.99811 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47151 * 299.99959 * 10 9 7 27 27 H 1.09000 * 109.47199 * 59.99690 * 10 9 7 28 28 H 1.09000 * 109.47078 * 300.00144 * 11 10 9 29 29 H 1.09000 * 109.47112 * 59.99776 * 11 10 9 30 30 H 1.09000 * 109.47360 * 300.00239 * 12 11 10 31 31 H 1.09000 * 109.46971 * 59.99957 * 12 11 10 32 32 H 1.09000 * 117.50546 * 0.02562 * 18 16 14 33 33 H 1.09003 * 117.51154 * 145.03501 * 18 16 14 34 34 H 1.09003 * 109.62861 * 315.95012 * 20 19 18 35 35 H 1.08996 * 109.63507 * 76.55101 * 20 19 18 36 36 H 1.09006 * 109.49309 * 186.08087 * 21 20 19 37 37 H 1.09002 * 109.50054 * 65.99152 * 21 20 19 38 38 H 1.09002 * 109.49830 * 175.68837 * 23 22 21 39 39 H 1.09004 * 109.49349 * 55.59571 * 23 22 21 40 40 H 1.08996 * 109.63175 * 283.44796 * 24 19 18 41 41 H 1.09005 * 109.63151 * 44.05291 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0013 11 6 1.9792 -5.3243 -0.0018 12 6 3.1511 -6.3078 -0.0019 13 8 2.6419 -7.6676 -0.0017 14 6 3.5483 -8.6577 -0.0013 15 8 4.7279 -8.3968 -0.0007 16 6 3.0943 -10.0947 -0.0005 17 1 2.1597 -10.2923 0.5246 18 6 4.1751 -11.1775 0.0483 19 6 3.3969 -10.9308 -1.2422 20 6 4.1305 -10.2491 -2.4022 21 6 3.0881 -9.7423 -3.4060 22 8 2.2333 -10.8223 -3.7855 23 6 1.4421 -11.3546 -2.7217 24 6 2.3637 -11.9796 -1.6677 25 1 -0.4850 0.8400 0.0004 26 1 3.1250 -3.7311 -0.8908 27 1 3.1237 -3.7318 0.8891 28 1 1.3701 -5.4845 0.8879 29 1 1.3709 -5.4843 -0.8920 30 1 3.7598 -6.1475 -0.8918 31 1 3.7597 -6.1480 0.8881 32 1 5.2143 -10.8503 0.0802 33 1 3.9515 -12.0873 0.6054 34 1 4.7132 -9.4092 -2.0238 35 1 4.7905 -10.9662 -2.8902 36 1 3.5935 -9.3508 -4.2888 37 1 2.4941 -8.9525 -2.9461 38 1 0.7694 -12.1169 -3.1147 39 1 0.8590 -10.5541 -2.2663 40 1 2.8733 -12.8441 -2.0931 41 1 1.7757 -12.2864 -0.8026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805543607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:35 Heat of formation + Delta-G solvation = -130.328108 kcal Electronic energy + Delta-G solvation = -21776.353833 eV Core-core repulsion = 18361.668528 eV Total energy + Delta-G solvation = -3414.685306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.123 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.15820 -39.57424 -37.38665 -36.23271 -33.53206 -32.46297 -31.62798 -30.61573 -27.16912 -25.63841 -24.71558 -24.11860 -23.14696 -21.38885 -20.88404 -19.30795 -17.91859 -17.41571 -16.87829 -16.70180 -16.39290 -16.11367 -15.28274 -14.91691 -14.83778 -14.61174 -14.27150 -13.87466 -13.71067 -13.34726 -12.93587 -12.85751 -12.64627 -12.32179 -12.15570 -11.74251 -11.54094 -11.38381 -11.20689 -11.16326 -11.01744 -10.91516 -10.79730 -10.72091 -10.59140 -10.40456 -10.29127 -9.68164 -9.61985 -9.10315 -8.37666 -6.58718 -6.26807 -3.97925 1.89178 2.43851 3.19235 3.20417 3.26800 3.28409 3.51283 3.54882 4.08837 4.17789 4.18720 4.27122 4.37467 4.61746 4.69895 4.85673 5.02739 5.06375 5.09679 5.10269 5.13957 5.18525 5.27577 5.29680 5.35994 5.37241 5.44313 5.47283 5.59663 5.65918 5.73515 5.74147 5.78078 5.87296 6.12958 6.39757 6.41349 6.63780 6.89340 7.57557 7.65026 8.33220 9.19784 10.81450 Molecular weight = 300.12amu Principal moments of inertia in cm(-1) A = 0.027449 B = 0.002461 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.816954 B =11375.141874 C =11733.579242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.518 4.518 8 H 0.074 0.926 9 S -0.124 6.124 10 C -0.114 4.114 11 C -0.098 4.098 12 C 0.072 3.928 13 O -0.351 6.351 14 C 0.492 3.508 15 O -0.509 6.509 16 C -0.164 4.164 17 H 0.136 0.864 18 C -0.134 4.134 19 C -0.094 4.094 20 C -0.131 4.131 21 C 0.061 3.939 22 O -0.381 6.381 23 C 0.060 3.940 24 C -0.117 4.117 25 H 0.267 0.733 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.411 -25.332 -2.583 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.666 4.666 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.003 4.003 13 O -0.267 6.267 14 C 0.335 3.665 15 O -0.398 6.398 16 C -0.183 4.183 17 H 0.154 0.846 18 C -0.171 4.171 19 C -0.094 4.094 20 C -0.169 4.169 21 C -0.015 4.015 22 O -0.300 6.300 23 C -0.017 4.017 24 C -0.155 4.155 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.457 -25.334 -2.773 25.872 hybrid contribution 1.981 1.594 0.506 2.593 sum 6.438 -23.740 -2.266 24.702 Atomic orbital electron populations 1.70027 1.05933 1.27326 1.47187 1.25024 0.95104 0.99153 0.94519 0.86091 0.79648 0.81732 0.77920 1.19578 1.20518 1.20533 1.22734 0.94612 0.90635 1.58600 0.90794 1.84663 1.08761 0.99267 1.96877 1.23179 1.03462 0.96323 1.03339 1.21283 0.96410 0.91577 1.04330 1.23299 0.97826 0.76533 1.02593 1.86467 1.40141 1.16869 1.83208 1.22436 0.84314 0.87537 0.72221 1.90650 1.18583 1.84891 1.45656 1.21972 1.03436 0.86824 1.06022 0.84647 1.23188 0.97399 0.97748 0.98739 1.21543 1.00258 0.98378 0.89237 1.22004 0.98386 1.01383 0.95105 1.22629 0.91399 0.88893 0.98619 1.87873 1.56593 1.50985 1.34550 1.22635 0.92581 0.98151 0.88355 1.21884 0.96587 0.97082 0.99921 0.92284 0.91733 0.91734 0.90327 0.90355 0.91168 0.91109 0.87023 0.87135 0.89689 0.89784 0.88412 0.92741 0.88524 0.92602 0.89832 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.81 13.22 55.49 0.73 -25.08 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.75 9.50 30.94 0.29 -14.45 16 8 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.12 -3.21 21.44 -107.50 -2.30 -5.51 16 10 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 11 C -0.10 -1.58 5.60 -26.74 -0.15 -1.73 16 12 C 0.07 1.04 5.47 37.15 0.20 1.25 16 13 O -0.35 -4.84 10.22 -39.26 -0.40 -5.24 16 14 C 0.49 6.27 6.68 36.00 0.24 6.51 16 15 O -0.51 -7.59 14.74 -18.74 -0.28 -7.87 16 16 C -0.16 -1.50 6.00 -91.88 -0.55 -2.05 16 17 H 0.14 1.01 8.14 -51.93 -0.42 0.59 16 18 C -0.13 -1.01 9.51 -26.85 -0.26 -1.27 16 19 C -0.09 -0.76 2.03 -154.55 -0.31 -1.07 16 20 C -0.13 -1.20 5.58 -26.43 -0.15 -1.35 16 21 C 0.06 0.59 6.84 37.33 0.26 0.84 16 22 O -0.38 -3.88 10.69 -35.23 -0.38 -4.25 16 23 C 0.06 0.45 6.85 37.33 0.26 0.71 16 24 C -0.12 -0.74 5.92 -26.43 -0.16 -0.90 16 25 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 27 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 31 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 32 H 0.11 0.97 7.67 -51.93 -0.40 0.57 16 33 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.92 5.95 -51.93 -0.31 0.61 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -32.39 354.11 -9.11 -41.50 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.59 Total: -1.65 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -0.21 Total: -13.67 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.73 Total: -25.08 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -1.05 Total: -17.36 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.30 Total: -5.51 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.39 -9.11 -41.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805543607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.827 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds