Wall clock time and date at job start Fri Apr 10 2020 20:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86795 * 120.00284 * 2 1 4 4 H 1.48506 * 109.47056 * 240.00445 * 3 2 1 5 5 H 1.48501 * 109.47218 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47014 * 120.00662 * 3 2 1 7 7 C 1.40027 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00064 * 197.29009 * 7 2 1 9 9 C 1.41562 * 120.00147 * 17.29264 * 7 2 1 10 10 C 1.41185 * 120.98813 * 23.16176 * 9 7 2 11 11 C 1.36561 * 119.14301 * 180.02562 * 10 9 7 12 12 N 1.32101 * 121.26621 * 359.72370 * 11 10 9 13 13 C 1.32529 * 122.21832 * 0.57199 * 12 11 10 14 14 N 1.39079 * 119.66212 * 179.70338 * 13 12 11 15 15 C 1.46500 * 120.00468 * 179.72658 * 14 13 12 16 16 H 1.09002 * 109.46833 * 325.00413 * 15 14 13 17 17 C 1.52995 * 109.47437 * 205.00129 * 15 14 13 18 18 C 1.53787 * 113.61398 * 80.86428 * 17 15 14 19 19 C 1.54052 * 86.98585 * 140.01940 * 18 17 15 20 20 C 1.53782 * 113.61600 * 178.47146 * 17 15 14 21 21 C 1.52995 * 109.46860 * 85.00126 * 15 14 13 22 22 F 1.39897 * 109.47258 * 180.02562 * 21 15 14 23 23 F 1.39903 * 109.47537 * 300.00124 * 21 15 14 24 24 F 1.39904 * 109.47269 * 60.00005 * 21 15 14 25 25 C 1.38746 * 120.68168 * 359.43115 * 13 12 11 26 26 H 0.96999 * 119.99570 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.42982 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.37112 * 180.02562 * 11 10 9 29 29 H 0.96998 * 119.99478 * 359.73267 * 14 13 12 30 30 H 1.09004 * 112.85287 * 309.67337 * 17 15 14 31 31 H 1.09004 * 113.61073 * 254.61864 * 18 17 15 32 32 H 1.08995 * 113.61197 * 25.51782 * 18 17 15 33 33 H 1.09001 * 113.62087 * 220.02252 * 19 18 17 34 34 H 1.08997 * 113.68533 * 89.12701 * 19 18 17 35 35 H 1.08999 * 113.61218 * 334.48679 * 20 17 15 36 36 H 1.08998 * 113.61407 * 105.38636 * 20 17 15 37 37 H 1.07999 * 120.66540 * 180.25061 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0952 1.6963 -1.2126 5 1 1.2766 2.7464 0.0006 6 1 3.0954 1.6962 1.2124 7 6 2.0075 -1.2127 -0.0005 8 1 3.0509 -1.2341 0.2774 9 6 1.3477 -2.4108 -0.3655 10 6 0.1895 -2.3860 -1.1725 11 6 -0.4173 -3.5643 -1.5015 12 7 0.0620 -4.7223 -1.0837 13 6 1.1417 -4.8059 -0.3199 14 7 1.5967 -6.0531 0.0947 15 6 2.7929 -6.1546 0.9343 16 1 3.5043 -5.3798 0.6483 17 6 3.4340 -7.5307 0.7445 18 6 4.3048 -7.6357 -0.5187 19 6 5.2941 -8.4566 0.3301 20 6 4.7243 -7.7267 1.5579 21 6 2.4026 -5.9719 2.4023 22 9 3.5450 -6.0683 3.2040 23 9 1.8164 -4.7136 2.5760 24 9 1.4895 -6.9663 2.7693 25 6 1.8263 -3.6624 0.0659 26 1 -0.4849 0.8401 0.0004 27 1 -0.2114 -1.4472 -1.5252 28 1 -1.3032 -3.5496 -2.1190 29 1 1.1219 -6.8557 -0.1721 30 1 2.7212 -8.3483 0.8525 31 1 3.8400 -8.2055 -1.3233 32 1 4.7059 -6.6790 -0.8532 33 1 6.3398 -8.2232 0.1297 34 1 5.0911 -9.5275 0.3256 35 1 5.2398 -6.7949 1.7901 36 1 4.5980 -8.3701 2.4286 37 1 2.7085 -3.7311 0.6851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158400739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:47:28 Heat of formation + Delta-G solvation = -105.486461 kcal Electronic energy + Delta-G solvation = -25174.752972 eV Core-core repulsion = 21116.136941 eV Total energy + Delta-G solvation = -4058.616032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.66654 -47.22560 -47.05319 -39.36738 -38.28494 -35.18750 -33.86043 -30.71163 -29.92536 -27.26019 -25.94877 -25.70772 -25.07597 -22.45728 -21.30647 -20.64475 -19.65422 -18.21358 -17.91443 -17.63115 -17.27684 -16.18653 -15.71721 -15.12095 -14.79851 -14.61590 -14.14174 -13.97415 -13.81583 -13.58659 -13.53048 -13.27682 -13.21973 -12.96774 -12.83854 -12.50438 -12.44319 -12.33622 -11.96930 -11.57421 -11.39884 -11.19294 -10.85807 -10.73457 -10.52528 -10.40614 -10.33752 -9.86688 -9.47630 -9.15697 -8.00315 -7.97068 -6.87749 -6.63773 -4.57664 2.79063 2.90695 3.02744 3.05116 3.15733 3.36112 3.53417 3.86897 4.06052 4.23489 4.52857 4.58064 4.65065 4.70136 4.83131 4.87691 5.16369 5.29462 5.61756 5.65666 5.68682 5.76269 5.81562 5.89367 6.02129 6.07789 6.33578 6.58605 6.80648 6.84350 6.96982 7.21439 7.48810 7.74845 7.87768 7.99257 8.35405 8.58858 8.79984 8.83734 9.68484 10.08935 Molecular weight = 300.11amu Principal moments of inertia in cm(-1) A = 0.018167 B = 0.004702 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.912146 B = 5953.157262 C = 6256.841023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.454 4.454 8 H 0.079 0.921 9 C 0.155 3.845 10 C -0.239 4.239 11 C 0.114 3.886 12 N -0.617 5.617 13 C 0.389 3.611 14 N -0.725 5.725 15 C 0.143 3.857 16 H 0.120 0.880 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.142 4.142 20 C -0.132 4.132 21 C 0.424 3.576 22 F -0.190 7.190 23 F -0.166 7.166 24 F -0.189 7.189 25 C -0.323 4.323 26 H 0.283 0.717 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.399 0.601 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.779 -10.765 1.654 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.485 4.485 8 H 0.097 0.903 9 C 0.147 3.853 10 C -0.263 4.263 11 C -0.035 4.035 12 N -0.340 5.340 13 C 0.159 3.841 14 N -0.361 5.361 15 C 0.032 3.968 16 H 0.137 0.863 17 C -0.142 4.142 18 C -0.160 4.160 19 C -0.180 4.180 20 C -0.170 4.170 21 C 0.367 3.633 22 F -0.172 7.172 23 F -0.148 7.148 24 F -0.171 7.171 25 C -0.349 4.349 26 H 0.094 0.906 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.234 0.766 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.210 -11.264 1.493 13.457 hybrid contribution 0.309 1.390 0.631 1.558 sum 7.519 -9.874 2.124 12.591 Atomic orbital electron populations 1.69795 1.07723 1.29591 1.33501 1.25968 0.94736 1.01489 0.91886 0.86325 0.80174 0.79921 0.80093 1.18680 1.20201 1.18875 1.19554 0.97973 0.90904 1.40029 0.90256 1.17574 0.89946 0.91576 0.86241 1.21823 1.01279 0.98193 1.05042 1.21357 0.97335 0.87731 0.97081 1.66682 1.16017 1.29878 1.21391 1.17864 0.90678 0.83898 0.91624 1.43868 1.29339 1.06604 1.56287 1.21851 0.90035 1.00750 0.84177 0.86264 1.22881 0.96762 0.95070 0.99516 1.22907 0.96344 1.01082 0.95714 1.22873 0.99275 0.99288 0.96524 1.23014 0.95256 1.01577 0.97113 1.21944 0.74741 0.74389 0.92223 1.93121 1.51016 1.95977 1.77065 1.93303 1.84479 1.40749 1.96228 1.93117 1.68435 1.62217 1.93329 1.21118 1.07020 0.92188 1.14589 0.90584 0.85781 0.86273 0.76599 0.87876 0.90976 0.89442 0.91141 0.90182 0.89103 0.90924 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.84 10.90 55.55 0.61 -19.24 16 2 C 0.08 1.95 5.20 -17.34 -0.09 1.86 16 3 Si 0.91 18.23 29.59 -169.99 -5.03 13.20 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.45 -11.87 9.12 -37.64 -0.34 -12.21 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.15 4.12 5.61 -106.55 -0.60 3.52 16 10 C -0.24 -6.21 8.75 -39.07 -0.34 -6.55 16 11 C 0.11 2.76 11.10 -18.04 -0.20 2.56 16 12 N -0.62 -14.85 10.37 -12.82 -0.13 -14.98 16 13 C 0.39 8.86 7.33 -154.98 -1.14 7.72 16 14 N -0.73 -13.00 5.16 -53.99 -0.28 -13.28 16 15 C 0.14 2.17 1.76 -67.94 -0.12 2.05 16 16 H 0.12 1.87 6.29 -51.93 -0.33 1.54 16 17 C -0.12 -1.41 3.03 -89.81 -0.27 -1.68 16 18 C -0.12 -1.26 7.65 -25.77 -0.20 -1.46 16 19 C -0.14 -1.23 8.09 -25.77 -0.21 -1.44 16 20 C -0.13 -1.32 5.87 -25.92 -0.15 -1.47 16 21 C 0.42 7.06 2.81 37.16 0.10 7.16 16 22 F -0.19 -2.85 14.78 2.25 0.03 -2.82 16 23 F -0.17 -3.44 14.60 2.25 0.03 -3.41 16 24 F -0.19 -3.15 16.95 2.25 0.04 -3.11 16 25 C -0.32 -7.86 7.63 -38.44 -0.29 -8.16 16 26 H 0.28 6.52 8.29 -40.82 -0.34 6.18 16 27 H 0.12 3.27 6.16 -52.49 -0.32 2.94 16 28 H 0.12 2.54 8.06 -52.49 -0.42 2.11 16 29 H 0.40 6.59 8.73 -40.82 -0.36 6.24 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.96 7.99 -51.93 -0.41 0.54 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.94 7.46 -51.93 -0.39 0.55 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.10 2.21 5.49 -52.49 -0.29 1.92 16 LS Contribution 314.71 15.07 4.74 4.74 Total: -1.00 -28.39 314.71 -8.02 -36.41 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -4.18 Total: 10.57 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -3.85 Total: -8.09 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.19 Total: -47.50 kcal Atomic # 9 Polarization: -9.44 SS G_CDS: 0.10 Total: -9.34 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.39 -8.02 -36.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158400739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.074 kcal (2) G-P(sol) polarization free energy of solvation -28.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds