Wall clock time and date at job start Fri Apr 10 2020 20:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86795 * 120.00194 * 2 1 4 4 H 1.48505 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99652 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99656 * 3 2 1 7 7 C 1.38816 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00563 * 180.02562 * 7 2 1 9 9 N 1.36920 * 119.99583 * 0.02562 * 7 2 1 10 10 C 1.38834 * 119.99597 * 180.27648 * 9 7 2 11 11 C 1.39244 * 119.83893 * 359.44841 * 10 9 7 12 12 C 1.38015 * 118.75774 * 179.29649 * 11 10 9 13 13 C 1.50697 * 120.48216 * 180.31513 * 12 11 10 14 14 F 1.39898 * 109.46852 * 0.28283 * 13 12 11 15 15 F 1.39896 * 109.47071 * 120.28132 * 13 12 11 16 16 F 1.39904 * 109.47369 * 240.28050 * 13 12 11 17 17 C 1.39655 * 119.03784 * 0.59458 * 12 11 10 18 18 C 1.37112 * 119.23066 * 0.54423 * 17 12 11 19 19 N 1.32112 * 119.83310 * 179.72407 * 10 9 7 20 20 C 1.50688 * 122.63722 * 177.46934 * 18 17 12 21 21 C 1.53079 * 110.87868 * 51.02174 * 20 18 17 22 22 C 1.52581 * 107.98089 * 266.88432 * 21 20 18 23 23 C 1.52989 * 109.66700 * 33.07077 * 22 21 20 24 24 C 1.50830 * 117.07253 * 181.45594 * 17 12 11 25 25 H 0.96999 * 119.99774 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99872 * 359.97438 * 9 7 2 27 27 H 1.08002 * 120.61753 * 359.54807 * 11 10 9 28 28 H 1.09000 * 109.19714 * 171.38484 * 20 18 17 29 29 H 1.08997 * 109.19483 * 290.66637 * 20 18 17 30 30 H 1.09001 * 109.75441 * 147.26202 * 21 20 18 31 31 H 1.09002 * 109.75685 * 26.50523 * 21 20 18 32 32 H 1.08999 * 109.43573 * 273.01565 * 22 21 20 33 33 H 1.09000 * 109.44095 * 153.12812 * 22 21 20 34 34 H 1.09002 * 109.62432 * 301.11328 * 23 22 21 35 35 H 1.09006 * 109.62709 * 180.55546 * 23 22 21 36 36 H 1.09005 * 109.09739 * 329.48020 * 24 17 12 37 37 H 1.08999 * 109.09743 * 88.56242 * 24 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8910 2.3964 -1.2126 6 1 1.8909 2.3964 1.2125 7 6 2.0097 -1.2022 0.0005 8 1 3.0897 -1.2023 0.0010 9 7 1.3251 -2.3879 0.0005 10 6 2.0192 -3.5902 0.0069 11 6 3.4117 -3.5863 0.0016 12 6 4.0791 -4.7942 0.0229 13 6 5.5855 -4.8352 0.0253 14 9 6.0875 -3.5294 0.0100 15 9 6.0323 -5.4932 1.1761 16 9 6.0352 -5.5210 -1.1082 17 6 3.3383 -5.9779 0.0364 18 6 1.9689 -5.9110 0.0167 19 7 1.3554 -4.7324 0.0124 20 6 1.0958 -7.1384 -0.0268 21 6 1.4956 -8.1314 1.0676 22 6 2.4940 -9.1169 0.4675 23 6 3.3483 -8.4077 -0.5850 24 6 4.1120 -7.2714 0.0937 25 1 -0.4850 0.8401 -0.0004 26 1 0.3551 -2.3878 0.0005 27 1 3.9591 -2.6555 -0.0147 28 1 0.0564 -6.8442 0.1185 29 1 1.1992 -7.6174 -1.0004 30 1 0.6139 -8.6676 1.4184 31 1 1.9580 -7.5979 1.8980 32 1 1.9544 -9.9412 0.0014 33 1 3.1386 -9.5056 1.2559 34 1 2.7050 -8.0015 -1.3656 35 1 4.0547 -9.1147 -1.0202 36 1 5.0703 -7.1362 -0.4078 37 1 4.2894 -7.5349 1.1363 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:47:57 Heat of formation + Delta-G solvation = -123.481140 kcal Electronic energy + Delta-G solvation = -25152.935103 eV Core-core repulsion = 21093.538764 eV Total energy + Delta-G solvation = -4059.396339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.85663 -47.34407 -47.27957 -39.98702 -37.33158 -35.09953 -33.32167 -32.06400 -30.38531 -29.41032 -26.11157 -25.41979 -24.97647 -23.63497 -21.38868 -20.48646 -19.48688 -18.40198 -18.14215 -17.81200 -17.46816 -16.19851 -15.46387 -15.41187 -14.63898 -14.40835 -14.35207 -14.07649 -13.95539 -13.73598 -13.65944 -13.49089 -13.44086 -13.40661 -13.04751 -12.71059 -12.34261 -12.10462 -11.87766 -11.66266 -11.43408 -11.04514 -10.82682 -10.73729 -10.54364 -10.48751 -10.28809 -10.20290 -10.02863 -9.20529 -8.76474 -8.60259 -7.09375 -6.78025 -3.98691 1.75545 2.09949 3.04204 3.05999 3.08041 3.12433 3.85789 4.14743 4.31654 4.44349 4.64161 4.79493 4.98932 5.01522 5.06418 5.11625 5.25255 5.42658 5.57513 5.72632 5.80041 5.88237 5.93396 6.08003 6.10820 6.16685 6.24342 6.31581 6.44728 6.47720 6.49346 6.58941 6.70725 6.96518 7.11017 7.31333 7.64091 8.42923 8.76813 9.10840 9.48304 10.37481 Molecular weight = 300.11amu Principal moments of inertia in cm(-1) A = 0.016440 B = 0.005334 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.761528 B = 5248.536646 C = 6678.213858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.028 3.972 3 Si 0.936 3.064 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.307 4.307 8 H 0.107 0.893 9 N -0.520 5.520 10 C 0.362 3.638 11 C -0.201 4.201 12 C -0.095 4.095 13 C 0.510 3.490 14 F -0.179 7.179 15 F -0.180 7.180 16 F -0.179 7.179 17 C -0.224 4.224 18 C 0.204 3.796 19 N -0.566 5.566 20 C -0.070 4.070 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.068 4.068 25 H 0.279 0.721 26 H 0.407 0.593 27 H 0.137 0.863 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.110 -12.048 0.158 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.178 4.178 3 Si 0.762 3.238 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.437 4.437 8 H 0.124 0.876 9 N -0.125 5.125 10 C 0.116 3.884 11 C -0.228 4.228 12 C -0.103 4.103 13 C 0.456 3.544 14 F -0.160 7.160 15 F -0.161 7.161 16 F -0.160 7.160 17 C -0.233 4.233 18 C 0.062 3.938 19 N -0.288 5.288 20 C -0.108 4.108 21 C -0.151 4.151 22 C -0.156 4.156 23 C -0.159 4.159 24 C -0.105 4.105 25 H 0.089 0.911 26 H 0.243 0.757 27 H 0.155 0.845 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.112 -11.436 0.152 12.527 hybrid contribution 1.153 1.039 0.040 1.552 sum 6.264 -10.398 0.193 12.140 Atomic orbital electron populations 1.69702 1.06144 1.29067 1.46279 1.25389 0.95795 1.00191 0.96427 0.85690 0.79581 0.80286 0.78259 1.18822 1.20216 1.20222 1.19845 0.93185 0.82083 1.48585 0.87570 1.40849 1.08924 1.00965 1.61762 1.17936 0.87724 0.86324 0.96397 1.20992 0.94444 0.97036 1.10367 1.19869 0.89169 0.95835 1.05450 1.18408 0.89499 0.73120 0.73393 1.93154 1.89275 1.37393 1.96192 1.93171 1.91043 1.81271 1.50644 1.93126 1.90969 1.79747 1.52167 1.19145 0.93658 0.93089 1.17375 1.20144 0.89345 0.91859 0.92418 1.67077 1.40420 0.96878 1.24405 1.20557 0.98800 0.91800 0.99651 1.21499 0.98805 0.96631 0.98201 1.21624 0.97819 0.97755 0.98435 1.21712 0.98780 0.96949 0.98486 1.20406 0.97746 0.91879 1.00500 0.91079 0.75685 0.84490 0.90485 0.89910 0.91688 0.91521 0.92388 0.92224 0.90745 0.92254 0.91860 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.64 13.05 55.49 0.72 -21.92 16 2 C 0.03 0.69 5.50 -17.45 -0.10 0.59 16 3 Si 0.94 19.10 29.55 -169.99 -5.02 14.07 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 6 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.31 -7.64 9.55 -15.07 -0.14 -7.79 16 8 H 0.11 2.54 5.66 -52.49 -0.30 2.24 16 9 N -0.52 -12.83 5.44 -11.23 -0.06 -12.89 16 10 C 0.36 8.37 7.62 -155.39 -1.18 7.19 16 11 C -0.20 -4.33 8.71 -39.29 -0.34 -4.67 16 12 C -0.09 -1.83 5.40 -104.18 -0.56 -2.39 16 13 C 0.51 8.84 2.79 36.00 0.10 8.94 16 14 F -0.18 -3.16 16.04 2.25 0.04 -3.13 16 15 F -0.18 -2.97 16.22 2.25 0.04 -2.94 16 16 F -0.18 -2.94 15.28 2.25 0.03 -2.91 16 17 C -0.22 -4.03 5.50 -104.44 -0.57 -4.60 16 18 C 0.20 3.81 6.01 -82.56 -0.50 3.31 16 19 N -0.57 -12.34 10.15 -8.78 -0.09 -12.43 16 20 C -0.07 -1.03 5.30 -27.85 -0.15 -1.17 16 21 C -0.11 -1.38 5.74 -26.90 -0.15 -1.54 16 22 C -0.12 -1.27 5.64 -26.95 -0.15 -1.42 16 23 C -0.12 -1.48 5.61 -26.84 -0.15 -1.63 16 24 C -0.07 -0.99 4.17 -27.92 -0.12 -1.11 16 25 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 26 H 0.41 10.38 8.01 -40.82 -0.33 10.06 16 27 H 0.14 2.94 5.15 -52.49 -0.27 2.67 16 28 H 0.08 1.15 8.05 -51.93 -0.42 0.73 16 29 H 0.08 1.09 5.79 -51.93 -0.30 0.79 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.91 7.80 -51.93 -0.40 0.51 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.60 8.05 -51.93 -0.42 0.18 16 34 H 0.07 0.96 5.40 -51.93 -0.28 0.68 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.94 5.16 -51.93 -0.27 0.67 16 37 H 0.06 0.90 7.70 -51.93 -0.40 0.50 16 LS Contribution 304.14 15.07 4.58 4.58 Total: -1.00 -25.57 304.14 -7.57 -33.14 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -3.79 Total: 10.70 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -4.02 Total: -6.29 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.57 Total: -47.24 kcal Atomic # 9 Polarization: -9.07 SS G_CDS: 0.11 Total: -8.97 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -25.57 -7.57 -33.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.342 kcal (2) G-P(sol) polarization free energy of solvation -25.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds