Wall clock time and date at job start Fri Apr 10 2020 20:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30417 * 125.97475 * 2 1 4 4 N 1.39922 * 108.95537 * 180.25815 * 3 2 1 5 5 C 1.46505 * 125.74411 * 179.71371 * 4 3 2 6 6 C 1.34346 * 108.50602 * 359.71632 * 4 3 2 7 7 Cl 1.73600 * 126.31964 * 179.97438 * 6 4 3 8 8 C 1.38277 * 107.35887 * 359.97438 * 6 4 3 9 9 C 1.47299 * 126.43480 * 180.02562 * 8 6 4 10 10 O 1.21613 * 120.00190 * 90.02347 * 9 8 6 11 11 N 1.34777 * 119.99559 * 270.02032 * 9 8 6 12 12 C 1.46499 * 119.99665 * 179.72407 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 N 1.46506 * 109.46748 * 180.02562 * 14 13 12 16 16 C 1.36939 * 119.99838 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99927 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99976 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00037 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99973 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46997 * 60.00396 * 20 18 16 22 22 H 1.48501 * 109.46950 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47074 * 300.00402 * 20 18 16 24 24 H 1.08995 * 109.47280 * 270.21930 * 1 2 3 25 25 H 1.09006 * 109.46985 * 30.21540 * 1 2 3 26 26 H 1.09001 * 109.46652 * 150.21436 * 1 2 3 27 27 H 1.09000 * 109.46861 * 269.99774 * 5 4 3 28 28 H 1.08997 * 109.47254 * 30.00107 * 5 4 3 29 29 H 1.09000 * 109.46913 * 150.00205 * 5 4 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 31 31 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 32 32 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 33 33 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 34 34 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 35 35 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 36 36 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 37 37 H 0.96992 * 119.99973 * 359.97438 * 15 14 13 38 38 H 0.97003 * 120.00466 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2732 1.0554 0.0000 4 7 3.6111 0.6459 -0.0060 5 6 4.7774 1.5324 -0.0138 6 6 3.6460 -0.6971 -0.0033 7 17 5.0709 -1.6887 -0.0092 8 6 2.3373 -1.1438 0.0049 9 6 1.8922 -2.5479 0.0108 10 8 1.7138 -3.1248 1.0664 11 7 1.6827 -3.1933 -1.1537 12 6 1.2459 -4.5916 -1.1479 13 6 1.0899 -5.0832 -2.5883 14 6 0.6343 -6.5438 -2.5822 15 7 0.4855 -7.0147 -3.9615 16 6 0.0835 -8.3006 -4.2064 17 1 -0.1243 -8.9675 -3.3827 18 6 -0.0580 -8.7466 -5.5133 19 7 0.1948 -7.9338 -6.5170 20 14 -0.6057 -10.5010 -5.8473 21 1 -1.9446 -10.7248 -5.2450 22 1 -0.6780 -10.7264 -7.3133 23 1 0.3705 -11.4468 -5.2490 24 1 -0.3633 0.0039 1.0276 25 1 -0.3633 0.8881 -0.5172 26 1 -0.3633 -0.8919 -0.5105 27 1 5.0614 1.7500 -1.0434 28 1 4.5308 2.4619 0.4993 29 1 5.6079 1.0448 0.4968 30 1 1.8254 -2.7333 -1.9957 31 1 1.9885 -5.2022 -0.6340 32 1 0.2895 -4.6713 -0.6312 33 1 0.3474 -4.4727 -3.1021 34 1 2.0464 -5.0036 -3.1051 35 1 1.3771 -7.1540 -2.0685 36 1 -0.3221 -6.6239 -2.0654 37 1 0.6711 -6.4154 -4.7012 38 1 0.0956 -8.2453 -7.4303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163575897.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:01 Heat of formation + Delta-G solvation = 38.384894 kcal Electronic energy + Delta-G solvation = -21146.703215 eV Core-core repulsion = 17666.042556 eV Total energy + Delta-G solvation = -3480.660660 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.83562 -39.28414 -37.40884 -35.98177 -34.51866 -34.28014 -32.02407 -30.89592 -29.98748 -29.28746 -26.54057 -25.13639 -23.11991 -22.09443 -21.18348 -20.87354 -20.00633 -18.08064 -17.02292 -16.63351 -16.35072 -15.83940 -15.72674 -15.10166 -14.61954 -14.16883 -13.94552 -13.86275 -13.61073 -13.25839 -13.12632 -13.07158 -12.95985 -12.69232 -12.34541 -12.15907 -12.10935 -11.63538 -11.15332 -10.93609 -10.89227 -10.79359 -10.58850 -10.15978 -9.97513 -9.68738 -9.67080 -9.03328 -9.02424 -8.86160 -6.92199 -5.75920 -3.04744 0.89168 1.03444 1.95811 2.06000 2.47334 3.24071 3.45661 3.49662 3.50954 3.92795 4.37261 4.60360 4.60705 4.69820 4.81150 4.88788 4.98416 5.17846 5.30909 5.34039 5.41347 5.52008 5.58853 5.65878 5.95051 6.01784 6.08950 6.12431 6.21441 6.34312 6.46798 6.81252 6.85476 7.04020 7.48051 7.70957 8.17475 8.43162 9.54154 10.11561 10.46199 11.47079 Molecular weight = 300.11amu Principal moments of inertia in cm(-1) A = 0.025312 B = 0.002502 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.908140 B =11186.842059 C =11502.144096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.122 3.878 3 N -0.274 5.274 4 N -0.354 5.354 5 C 0.092 3.908 6 C 0.158 3.842 7 Cl 0.015 6.985 8 C -0.257 4.257 9 C 0.595 3.405 10 O -0.529 6.529 11 N -0.716 5.716 12 C 0.122 3.878 13 C -0.138 4.138 14 C 0.156 3.844 15 N -0.734 5.734 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.909 3.091 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.286 1.286 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.402 0.598 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.384 0.616 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.889 22.176 13.515 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 N -0.097 5.097 4 N -0.136 5.136 5 C -0.048 4.048 6 C 0.001 3.999 7 Cl 0.043 6.957 8 C -0.273 4.273 9 C 0.378 3.622 10 O -0.405 6.405 11 N -0.367 5.367 12 C -0.001 4.001 13 C -0.176 4.176 14 C 0.028 3.972 15 N -0.378 5.378 16 C -0.371 4.371 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.236 0.764 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.217 0.783 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.005 22.842 14.295 28.411 hybrid contribution 0.267 -1.415 -0.943 1.721 sum 9.272 21.427 13.351 26.895 Atomic orbital electron populations 1.20332 0.85144 1.04202 1.04059 1.22334 0.97235 0.88216 0.96658 1.77290 0.84750 1.21527 1.26133 1.48368 1.06698 1.02649 1.55838 1.22090 0.83747 0.94558 1.04449 1.21963 0.89968 0.84227 1.03765 1.98453 1.35244 1.65369 1.96628 1.19829 0.90333 0.95395 1.21746 1.17069 0.77113 0.83971 0.84014 1.90807 1.50975 1.67593 1.31087 1.46071 1.68437 1.13914 1.08246 1.21413 1.00461 0.80129 0.98147 1.21948 1.02395 0.98764 0.94486 1.20522 0.97459 0.90373 0.88815 1.42334 1.82097 1.12348 1.01035 1.19204 1.37410 0.88660 0.91831 0.91141 1.24750 1.02556 0.98213 0.95548 1.69646 1.55584 1.35022 0.98133 0.86244 0.78538 0.84457 0.76819 1.21216 1.21690 1.21241 0.89492 0.89876 0.89748 0.89621 0.88193 0.88977 0.76384 0.91186 0.91076 0.91215 0.91289 0.96046 0.96004 0.78303 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.28 36.01 0.37 -0.28 16 2 C 0.12 1.34 7.26 -82.01 -0.60 0.75 16 3 N -0.27 -3.02 12.49 33.90 0.42 -2.60 16 4 N -0.35 -3.37 3.98 -64.32 -0.26 -3.63 16 5 C 0.09 0.46 11.28 59.85 0.68 1.13 16 6 C 0.16 1.70 7.54 -16.44 -0.12 1.58 16 7 Cl 0.01 0.14 28.56 -51.86 -1.48 -1.34 16 8 C -0.26 -3.12 5.88 -105.02 -0.62 -3.73 16 9 C 0.59 8.18 7.20 -12.58 -0.09 8.09 16 10 O -0.53 -9.17 17.11 5.27 0.09 -9.08 16 11 N -0.72 -8.70 5.55 -61.42 -0.34 -9.04 16 12 C 0.12 1.65 5.67 -4.04 -0.02 1.63 16 13 C -0.14 -2.09 5.44 -26.73 -0.15 -2.23 16 14 C 0.16 3.10 6.26 -4.04 -0.03 3.08 16 15 N -0.73 -18.67 5.60 -59.90 -0.34 -19.01 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.94 -28.37 13.06 55.49 0.72 -27.64 16 20 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.68 8.01 -51.93 -0.42 0.27 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.33 7.77 -51.93 -0.40 -0.08 16 30 H 0.40 4.11 8.46 -40.82 -0.35 3.76 16 31 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.38 10.14 7.67 -40.82 -0.31 9.83 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -34.91 349.00 -7.01 -41.92 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.25 Total: 5.12 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.82 Total: 2.54 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.22 Total: -61.92 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -1.48 Total: -1.34 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.91 -7.01 -41.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163575897.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.309 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds