Wall clock time and date at job start Fri Apr 10 2020 20:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45204 * 109.46947 * 2 1 4 4 C 1.34227 * 116.99738 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00056 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99944 * 180.02562 * 4 3 2 7 7 F 1.39895 * 109.47418 * 85.00030 * 6 4 3 8 8 F 1.39906 * 109.47037 * 325.00150 * 6 4 3 9 9 C 1.53002 * 109.47431 * 205.00488 * 6 4 3 10 10 N 1.46491 * 109.47568 * 179.97438 * 9 6 4 11 11 C 1.38092 * 120.00240 * 179.97438 * 10 9 6 12 12 N 1.32266 * 119.90603 * 0.02562 * 11 10 9 13 13 C 1.31965 * 121.86954 * 179.97438 * 12 11 10 14 14 C 1.38681 * 121.44583 * 0.02562 * 13 12 11 15 15 C 1.38008 * 119.62842 * 359.97438 * 14 13 12 16 16 C 1.41000 * 118.27765 * 359.75153 * 15 14 13 17 17 C 1.41025 * 120.70517 * 180.24401 * 16 15 14 18 18 H 1.07996 * 119.99976 * 150.12811 * 17 16 15 19 19 C 1.39948 * 119.99739 * 330.13159 * 17 16 15 20 20 N 1.30873 * 119.99579 * 162.12747 * 19 17 16 21 21 Si 1.86795 * 120.00265 * 342.12396 * 19 17 16 22 22 H 1.48499 * 109.47163 * 95.38906 * 21 19 17 23 23 H 1.48500 * 109.47013 * 215.39076 * 21 19 17 24 24 H 1.48508 * 109.47048 * 335.39134 * 21 19 17 25 25 H 1.08997 * 109.47076 * 59.99808 * 1 2 3 26 26 H 1.09000 * 109.47158 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47123 * 299.99640 * 1 2 3 28 28 H 1.08993 * 109.46700 * 240.00332 * 2 1 3 29 29 H 1.08997 * 109.47076 * 120.00192 * 2 1 3 30 30 H 1.09000 * 109.46873 * 299.99987 * 9 6 4 31 31 H 1.09002 * 109.46935 * 59.99511 * 9 6 4 32 32 H 0.97004 * 120.00169 * 0.02562 * 10 9 6 33 33 H 1.08004 * 119.27709 * 179.97438 * 13 12 11 34 34 H 1.08001 * 120.18814 * 180.02562 * 14 13 12 35 35 H 1.07994 * 120.86081 * 180.02562 * 15 14 13 36 36 H 0.97000 * 119.99868 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 9 3.9923 3.4119 1.3152 8 9 3.1007 3.7815 -0.7554 9 6 5.3239 2.9092 -0.6081 10 7 5.8836 4.2630 -0.6081 11 6 7.1494 4.4869 -1.1126 12 7 7.8546 3.4777 -1.5960 13 6 9.0673 3.6476 -2.0879 14 6 9.6655 4.8983 -2.1222 15 6 8.9838 5.9942 -1.6336 16 6 7.6868 5.7981 -1.1165 17 6 6.9423 6.8829 -0.6088 18 1 5.8639 6.8711 -0.6651 19 6 7.6011 7.9747 -0.0322 20 7 6.9729 9.1129 0.1184 21 14 9.3769 7.8075 0.5227 22 1 10.2791 8.2938 -0.5518 23 1 9.5898 8.6145 1.7509 24 1 9.6734 6.3810 0.8101 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 5.9628 2.2516 -0.0187 31 1 5.2681 2.5395 -1.6320 32 1 5.3654 5.0021 -0.2529 33 1 9.6061 2.7937 -2.4715 34 1 10.6589 5.0142 -2.5298 35 1 9.4305 6.9773 -1.6509 36 1 7.4293 9.8696 0.5184 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167848069.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:57 Heat of formation + Delta-G solvation = -146.269873 kcal Electronic energy + Delta-G solvation = -24282.506366 eV Core-core repulsion = 20209.749044 eV Total energy + Delta-G solvation = -4072.757322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.29354 -47.28707 -40.81109 -38.82279 -37.25658 -35.08517 -33.93530 -32.18677 -31.26435 -30.74739 -28.38838 -25.54923 -24.88253 -23.18430 -21.86145 -21.12330 -20.92972 -18.92005 -18.08807 -17.79716 -17.49208 -16.96272 -16.63225 -16.08345 -15.36429 -14.88856 -14.80178 -14.46202 -14.18115 -13.83979 -13.69541 -13.57433 -13.52875 -13.25802 -13.21794 -12.97217 -12.46158 -12.35907 -12.23266 -12.03510 -11.98699 -11.84084 -11.39898 -10.94014 -10.82350 -10.72034 -10.32910 -9.95401 -9.48868 -9.30015 -8.29278 -8.21434 -6.99072 -6.89660 -4.43204 1.45037 1.76142 2.50644 2.69279 3.07691 3.18046 3.29456 3.50434 3.70793 3.84950 3.94946 4.37135 4.49748 4.55528 4.57151 4.58803 4.89401 5.24690 5.37831 5.41825 5.57594 5.68883 5.75472 5.78934 5.90786 6.08201 6.33845 6.46556 6.73501 6.99806 7.06495 7.25368 7.51352 7.72180 7.92815 8.19299 8.25155 8.59496 8.70052 9.45779 10.02822 Molecular weight = 300.11amu Principal moments of inertia in cm(-1) A = 0.022652 B = 0.003994 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.808144 B = 7008.626944 C = 7833.383315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.339 6.339 4 C 0.440 3.560 5 O -0.459 6.459 6 C 0.309 3.691 7 F -0.167 7.167 8 F -0.170 7.170 9 C 0.121 3.879 10 N -0.724 5.724 11 C 0.320 3.680 12 N -0.525 5.525 13 C 0.002 3.998 14 C -0.166 4.166 15 C -0.199 4.199 16 C 0.022 3.978 17 C -0.442 4.442 18 H 0.091 0.909 19 C 0.086 3.914 20 N -0.806 5.806 21 Si 0.911 3.089 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.246 1.246 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.413 0.587 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.829 -12.454 0.822 15.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 O -0.255 6.255 4 C 0.277 3.723 5 O -0.344 6.344 6 C 0.271 3.729 7 F -0.147 7.147 8 F -0.150 7.150 9 C -0.006 4.006 10 N -0.366 5.366 11 C 0.081 3.919 12 N -0.243 5.243 13 C -0.150 4.150 14 C -0.188 4.188 15 C -0.225 4.225 16 C 0.015 3.985 17 C -0.472 4.472 18 H 0.109 0.891 19 C -0.133 4.133 20 N -0.430 5.430 21 Si 0.737 3.263 22 H -0.196 1.196 23 H -0.218 1.218 24 H -0.169 1.169 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.252 0.748 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.032 -13.499 0.871 16.266 hybrid contribution 0.836 1.249 0.457 1.571 sum -8.197 -12.250 1.328 14.799 Atomic orbital electron populations 1.21826 0.92033 1.03209 1.03962 1.23239 0.95897 0.79190 1.03209 1.86592 1.22693 1.33496 1.82758 1.23801 0.82154 0.91772 0.74530 1.90765 1.60315 1.41088 1.42191 1.21085 0.92389 0.82412 0.77061 1.93147 1.96918 1.88676 1.36003 1.93139 1.74186 1.72396 1.75320 1.21777 0.86973 0.89403 1.02437 1.43427 1.15838 1.06430 1.70865 1.18219 0.86595 0.89059 0.98034 1.66572 1.08719 1.33874 1.15093 1.21393 0.91767 0.95489 1.06346 1.21324 0.99659 0.94305 1.03505 1.21040 0.97135 0.97761 1.06519 1.18009 0.93282 0.91451 0.95791 1.19124 0.96003 0.98780 1.33326 0.89072 1.26082 1.00438 0.93573 0.93255 1.69700 1.39576 1.01306 1.32429 0.86296 0.81639 0.80537 0.77814 1.19643 1.21767 1.16929 0.91138 0.89879 0.91211 0.90512 0.90611 0.88348 0.89178 0.74832 0.85708 0.88027 0.87331 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.58 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.34 -4.19 10.05 -39.25 -0.39 -4.58 16 4 C 0.44 6.19 7.34 36.00 0.26 6.45 16 5 O -0.46 -6.98 15.84 -18.75 -0.30 -7.27 16 6 C 0.31 4.75 1.99 -27.88 -0.06 4.69 16 7 F -0.17 -2.68 16.91 2.25 0.04 -2.64 16 8 F -0.17 -2.68 16.77 2.25 0.04 -2.64 16 9 C 0.12 2.08 4.72 -4.05 -0.02 2.06 16 10 N -0.72 -14.84 5.47 -59.98 -0.33 -15.17 16 11 C 0.32 7.51 7.52 -155.03 -1.17 6.34 16 12 N -0.53 -11.99 9.54 -11.87 -0.11 -12.11 16 13 C 0.00 0.04 11.17 -17.33 -0.19 -0.15 16 14 C -0.17 -3.57 10.08 -39.50 -0.40 -3.97 16 15 C -0.20 -4.74 7.27 -38.62 -0.28 -5.02 16 16 C 0.02 0.55 5.13 -106.47 -0.55 0.01 16 17 C -0.44 -11.45 8.93 -37.89 -0.34 -11.79 16 18 H 0.09 2.42 7.04 -52.49 -0.37 2.05 16 19 C 0.09 2.18 5.42 -17.32 -0.09 2.09 16 20 N -0.81 -20.89 13.93 55.55 0.77 -20.11 16 21 Si 0.91 20.50 24.53 -169.99 -4.17 16.33 16 22 H -0.27 -5.89 6.71 56.52 0.38 -5.52 16 23 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.25 -5.76 6.84 56.52 0.39 -5.38 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.10 1.72 7.87 -51.93 -0.41 1.32 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.41 8.49 6.65 -40.82 -0.27 8.22 16 33 H 0.13 2.28 8.06 -52.48 -0.42 1.86 16 34 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.11 2.56 4.81 -52.49 -0.25 2.30 16 36 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 LS Contribution 319.36 15.07 4.81 4.81 Total: -1.00 -28.55 319.36 -5.71 -34.26 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -3.86 Total: 8.25 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.21 Total: 0.87 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.33 Total: -47.39 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.69 Total: -11.86 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.08 Total: -5.28 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.17 Total: 16.33 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.55 -5.71 -34.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167848069.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.007 kcal (2) G-P(sol) polarization free energy of solvation -28.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds