Wall clock time and date at job start Fri Apr 10 2020 20:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47094 * 2 1 4 4 O 1.42908 * 109.47180 * 179.97438 * 3 2 1 5 5 C 1.35309 * 116.99988 * 180.02562 * 4 3 2 6 6 N 1.32901 * 120.01260 * 0.02562 * 5 4 3 7 7 C 1.32331 * 120.08967 * 180.02562 * 6 5 4 8 8 Cl 1.73601 * 119.94164 * 179.97438 * 7 6 5 9 9 N 1.32285 * 120.12090 * 359.97438 * 7 6 5 10 10 C 1.33043 * 120.03165 * 0.02562 * 9 7 6 11 11 N 1.37992 * 120.05133 * 179.97438 * 10 9 7 12 12 C 1.46498 * 119.99614 * 0.28087 * 11 10 9 13 13 C 1.52996 * 109.47059 * 179.72225 * 12 11 10 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00420 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46710 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47158 * 119.99784 * 19 17 15 22 22 H 1.48502 * 109.46769 * 240.00242 * 19 17 15 23 23 N 1.32662 * 120.01415 * 180.29991 * 5 4 3 24 24 H 1.09000 * 109.46857 * 300.00051 * 1 2 3 25 25 H 1.08998 * 109.46779 * 60.00253 * 1 2 3 26 26 H 1.08996 * 109.46813 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47467 * 239.99933 * 2 1 3 28 28 H 1.09004 * 109.46984 * 120.00149 * 2 1 3 29 29 H 1.09000 * 109.47310 * 60.00227 * 3 2 1 30 30 H 1.08996 * 109.47473 * 300.00219 * 3 2 1 31 31 H 0.97001 * 119.99940 * 179.97438 * 11 10 9 32 32 H 1.09004 * 109.46963 * 299.72021 * 12 11 10 33 33 H 1.08994 * 109.47567 * 59.72173 * 12 11 10 34 34 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 35 35 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 36 36 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 37 37 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 38 38 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0833 2.6481 0.0012 6 7 3.3597 3.7629 0.0018 7 6 3.9589 4.9428 0.0019 8 17 3.0099 6.3964 0.0019 9 7 5.2797 5.0166 0.0019 10 6 6.0088 3.9037 0.0014 11 7 7.3866 3.9802 0.0009 12 6 8.0475 5.2877 0.0072 13 6 9.5649 5.0920 0.0123 14 6 10.2552 6.4574 0.0182 15 6 11.7498 6.2646 0.0238 16 1 12.1658 5.2680 0.0228 17 6 12.5862 7.3607 0.0292 18 7 12.0797 8.5745 0.0300 19 14 14.4389 7.1218 0.0354 20 1 14.7507 5.6699 0.0341 21 1 15.0238 7.7553 -1.1736 22 1 15.0149 7.7502 1.2515 23 7 5.4081 2.7179 -0.0042 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 7.9174 3.1684 0.0009 32 1 7.7561 5.8463 -0.8822 33 1 7.7496 5.8411 0.8977 34 1 9.8562 4.5333 0.9017 35 1 9.8629 4.5385 -0.8782 36 1 9.9639 7.0157 -0.8714 37 1 9.9573 7.0112 0.9086 38 1 12.6682 9.3456 0.0334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427509.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:31 Heat of formation + Delta-G solvation = 10.297943 kcal Electronic energy + Delta-G solvation = -20826.788827 eV Core-core repulsion = 17344.910226 eV Total energy + Delta-G solvation = -3481.878601 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.109 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.84591 -39.28341 -37.40955 -36.70321 -34.55885 -34.16849 -33.18827 -32.57960 -30.91720 -27.43656 -26.64692 -25.05466 -24.01257 -22.62178 -22.01536 -20.62984 -19.35140 -18.90804 -17.18013 -17.08457 -16.37496 -15.86531 -15.86054 -14.88430 -14.83745 -14.66233 -14.41085 -14.26187 -14.20242 -13.11838 -12.99282 -12.60286 -12.44927 -12.35904 -11.89933 -11.74858 -11.73510 -11.55206 -11.22923 -10.98755 -10.85023 -10.82714 -10.59187 -10.07380 -9.98567 -9.89864 -9.77738 -9.54978 -9.16621 -8.62893 -8.40817 -6.05376 -4.08464 0.66588 0.98283 1.00791 1.95939 2.88413 3.28356 3.36163 3.39744 3.60676 3.76394 4.18860 4.41759 4.45865 4.48299 4.77809 4.94643 5.03505 5.18335 5.26997 5.30780 5.51509 5.53466 5.62656 5.64857 5.75451 5.96224 6.03453 6.21643 6.48880 6.53796 6.78787 6.88289 6.95396 7.33976 7.58760 7.69789 7.92874 8.14031 8.33576 8.98145 9.56121 11.05805 Molecular weight = 300.11amu Principal moments of inertia in cm(-1) A = 0.025213 B = 0.002430 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.263436 B =11521.846604 C =12590.429744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.071 3.929 4 O -0.280 6.280 5 C 0.590 3.410 6 N -0.638 5.638 7 C 0.476 3.524 8 Cl 0.041 6.959 9 N -0.600 5.600 10 C 0.640 3.360 11 N -0.661 5.661 12 C 0.125 3.875 13 C -0.123 4.123 14 C 0.026 3.974 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.609 5.609 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.421 0.579 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.342 -12.904 -0.060 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.004 4.004 4 O -0.178 6.178 5 C 0.279 3.721 6 N -0.385 5.385 7 C 0.172 3.828 8 Cl 0.068 6.932 9 N -0.338 5.338 10 C 0.276 3.724 11 N -0.295 5.295 12 C 0.003 3.997 13 C -0.161 4.161 14 C -0.012 4.012 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.354 5.354 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.259 0.741 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.168 -12.790 -0.067 26.464 hybrid contribution 0.980 -0.030 0.008 0.980 sum -22.188 -12.820 -0.059 25.625 Atomic orbital electron populations 1.21669 0.93749 1.02606 1.02504 1.21550 0.96356 0.94386 1.03961 1.22975 0.75112 0.98788 1.03551 1.86076 1.23867 1.21930 1.85944 1.20123 0.84853 0.84114 0.83036 1.68133 1.41666 0.97982 1.30679 1.22501 0.85927 0.87873 0.86489 1.98462 1.69102 1.30104 1.95503 1.68091 1.05869 1.31891 1.27965 1.18960 0.87871 0.81921 0.83604 1.44781 0.99248 1.12002 1.73482 1.21914 0.93690 0.81208 1.02909 1.21952 0.90178 1.02671 1.01329 1.19022 0.94755 0.89623 0.97812 1.21224 0.91281 0.92645 1.50958 0.92534 1.25027 0.98936 0.95267 0.95227 1.69968 1.34997 0.97675 1.50543 0.86524 0.85548 0.78237 0.77613 1.19744 1.20987 1.20991 1.67684 1.08921 1.27877 1.30895 0.92170 0.92166 0.91588 0.90641 0.90640 0.90714 0.90713 0.74069 0.90849 0.90861 0.92404 0.92401 0.96108 0.96114 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.12 -0.79 6.30 -26.73 -0.17 -0.96 16 3 C 0.07 0.61 5.32 37.16 0.20 0.81 16 4 O -0.28 -3.44 10.19 -17.62 -0.18 -3.62 16 5 C 0.59 8.45 8.55 -90.45 -0.77 7.67 16 6 N -0.64 -8.78 9.37 -13.16 -0.12 -8.90 16 7 C 0.48 6.80 8.25 -91.27 -0.75 6.05 16 8 Cl 0.04 0.47 29.30 -51.86 -1.52 -1.05 16 9 N -0.60 -9.46 9.70 -12.41 -0.12 -9.58 16 10 C 0.64 10.00 8.48 -322.13 -2.73 7.27 16 11 N -0.66 -9.63 5.69 -62.19 -0.35 -9.99 16 12 C 0.12 2.03 5.69 -4.04 -0.02 2.00 16 13 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 14 C 0.03 0.62 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 19 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 N -0.61 -9.43 10.56 -15.50 -0.16 -9.59 16 24 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 30 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 31 H 0.42 5.42 8.59 -40.82 -0.35 5.07 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -30.26 346.68 -11.48 -41.73 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.38 Total: -2.39 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: -4.57 Total: 7.49 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -0.02 Total: -63.62 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.18 Total: -3.62 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: 0.47 SS G_CDS: -1.52 Total: -1.05 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.26 -11.48 -41.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427509.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.032 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds