Wall clock time and date at job start Fri Apr 10 2020 20:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47094 * 2 1 4 4 O 1.42908 * 109.47180 * 179.97438 * 3 2 1 5 5 C 1.35309 * 116.99988 * 180.02562 * 4 3 2 6 6 N 1.32901 * 120.01260 * 0.02562 * 5 4 3 7 7 C 1.32331 * 120.08967 * 180.02562 * 6 5 4 8 8 Cl 1.73601 * 119.94164 * 179.97438 * 7 6 5 9 9 N 1.32285 * 120.12090 * 359.97438 * 7 6 5 10 10 C 1.33043 * 120.03165 * 0.02562 * 9 7 6 11 11 N 1.37992 * 120.05133 * 179.97438 * 10 9 7 12 12 C 1.46498 * 119.99614 * 0.28087 * 11 10 9 13 13 C 1.52996 * 109.47059 * 179.72225 * 12 11 10 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00420 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46710 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47158 * 119.99784 * 19 17 15 22 22 H 1.48502 * 109.46769 * 240.00242 * 19 17 15 23 23 N 1.32662 * 120.01415 * 180.29991 * 5 4 3 24 24 H 1.09000 * 109.46857 * 300.00051 * 1 2 3 25 25 H 1.08998 * 109.46779 * 60.00253 * 1 2 3 26 26 H 1.08996 * 109.46813 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47467 * 239.99933 * 2 1 3 28 28 H 1.09004 * 109.46984 * 120.00149 * 2 1 3 29 29 H 1.09000 * 109.47310 * 60.00227 * 3 2 1 30 30 H 1.08996 * 109.47473 * 300.00219 * 3 2 1 31 31 H 0.97001 * 119.99940 * 179.97438 * 11 10 9 32 32 H 1.09004 * 109.46963 * 299.72021 * 12 11 10 33 33 H 1.08994 * 109.47567 * 59.72173 * 12 11 10 34 34 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 35 35 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 36 36 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 37 37 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 38 38 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0833 2.6481 0.0012 6 7 3.3597 3.7629 0.0018 7 6 3.9589 4.9428 0.0019 8 17 3.0099 6.3964 0.0019 9 7 5.2797 5.0166 0.0019 10 6 6.0088 3.9037 0.0014 11 7 7.3866 3.9802 0.0009 12 6 8.0475 5.2877 0.0072 13 6 9.5649 5.0920 0.0123 14 6 10.2552 6.4574 0.0182 15 6 11.7498 6.2646 0.0238 16 1 12.1658 5.2680 0.0228 17 6 12.5862 7.3607 0.0292 18 7 12.0797 8.5745 0.0300 19 14 14.4389 7.1218 0.0354 20 1 14.7507 5.6699 0.0341 21 1 15.0238 7.7553 -1.1736 22 1 15.0149 7.7502 1.2515 23 7 5.4081 2.7179 -0.0042 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 7.9174 3.1684 0.0009 32 1 7.7561 5.8463 -0.8822 33 1 7.7496 5.8411 0.8977 34 1 9.8562 4.5333 0.9017 35 1 9.8629 4.5385 -0.8782 36 1 9.9639 7.0157 -0.8714 37 1 9.9573 7.0112 0.9086 38 1 12.6682 9.3456 0.0334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427509.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:29 Heat of formation + Delta-G solvation = -7.747862 kcal Electronic energy + Delta-G solvation = -20827.571352 eV Core-core repulsion = 17344.910226 eV Total energy + Delta-G solvation = -3482.661126 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.109 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.95440 -40.24163 -38.50406 -37.89339 -35.81727 -35.27644 -34.45797 -33.89718 -32.52108 -28.74834 -27.75217 -26.15996 -25.48287 -24.02236 -22.65544 -22.20233 -20.44180 -20.03696 -18.47509 -18.14326 -18.13590 -16.95734 -16.83841 -16.47741 -16.11173 -15.87776 -15.66068 -15.45096 -14.99461 -14.29985 -14.28772 -13.74461 -13.70031 -13.48560 -13.06385 -12.96287 -12.71545 -12.69237 -12.55720 -12.35767 -12.08417 -12.06851 -11.74986 -11.60076 -11.50650 -11.18258 -11.08136 -11.04651 -10.92391 -10.53801 -9.83412 -8.18281 -6.28593 -0.45801 -0.15728 -0.04630 0.94977 1.42123 1.43061 1.55427 1.75643 2.42674 2.46536 2.70624 3.10432 3.15899 3.83168 3.92034 3.92148 4.10065 4.22271 4.30584 4.52729 4.53770 4.56460 4.74091 4.86425 4.95145 5.01474 5.11635 5.14576 5.17186 5.19205 5.36181 5.53127 5.69773 5.73745 5.81017 5.86765 6.22357 6.25107 6.88780 7.00927 7.40642 8.93585 Molecular weight = 300.11amu Principal moments of inertia in cm(-1) A = 0.025213 B = 0.002430 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.263436 B =11521.846604 C =12590.429744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.065 3.935 4 O -0.285 6.285 5 C 0.584 3.416 6 N -0.630 5.630 7 C 0.469 3.531 8 Cl 0.063 6.937 9 N -0.619 5.619 10 C 0.634 3.366 11 N -0.654 5.654 12 C 0.144 3.856 13 C -0.106 4.106 14 C 0.026 3.974 15 C -0.540 4.540 16 H 0.064 0.936 17 C -0.002 4.002 18 N -0.932 5.932 19 Si 0.963 3.037 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.281 1.281 23 N -0.621 5.621 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.429 0.571 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.067 0.933 36 H -0.002 1.002 37 H -0.002 1.002 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.813 -14.316 -0.061 27.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.009 4.009 4 O -0.183 6.183 5 C 0.274 3.726 6 N -0.376 5.376 7 C 0.165 3.835 8 Cl 0.091 6.909 9 N -0.358 5.358 10 C 0.270 3.730 11 N -0.290 5.290 12 C 0.021 3.979 13 C -0.144 4.144 14 C -0.011 4.011 15 C -0.578 4.578 16 H 0.082 0.918 17 C -0.199 4.199 18 N -0.572 5.572 19 Si 0.788 3.212 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.206 1.206 23 N -0.366 5.366 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.269 0.731 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.675 -14.243 -0.069 27.629 hybrid contribution 0.990 0.405 0.009 1.070 sum -22.685 -13.838 -0.060 26.572 Atomic orbital electron populations 1.21669 0.92232 1.03458 1.02845 1.21574 0.97455 0.92680 1.04011 1.23297 0.73244 1.00558 1.03844 1.86110 1.25760 1.21010 1.85423 1.20357 0.84795 0.84847 0.82612 1.68237 1.41208 0.97771 1.30432 1.22836 0.85886 0.88773 0.85975 1.98467 1.68378 1.28811 1.95284 1.68118 1.06651 1.32155 1.28840 1.19014 0.87998 0.82170 0.83770 1.44498 0.99154 1.11595 1.73758 1.21497 0.92156 0.81877 1.02385 1.21646 0.91221 0.99290 1.02234 1.18912 0.94327 0.92337 0.95567 1.21706 0.92859 0.92986 1.50272 0.91818 1.25957 1.04041 0.95009 0.94930 1.70096 1.36800 0.98572 1.51734 0.85427 0.79480 0.78702 0.77593 1.18485 1.20625 1.20636 1.67677 1.09665 1.27757 1.31516 0.91844 0.91839 0.90484 0.90605 0.90602 0.90399 0.90398 0.73056 0.91448 0.91460 0.91449 0.91447 0.98384 0.98394 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.91 71.98 0.71 -0.34 16 2 C -0.12 -1.32 6.30 30.59 0.19 -1.13 16 3 C 0.07 1.04 5.32 71.98 0.38 1.43 16 4 O -0.29 -6.73 10.19 -85.96 -0.88 -7.60 16 5 C 0.58 16.24 8.55 180.29 1.54 17.78 16 6 N -0.63 -16.73 9.37 -308.27 -2.89 -19.62 16 7 C 0.47 13.01 8.25 180.57 1.49 14.50 16 8 Cl 0.06 1.40 29.30 -2.72 -0.08 1.32 16 9 N -0.62 -19.18 9.70 -193.18 -1.87 -21.05 16 10 C 0.63 19.39 8.48 261.25 2.21 21.60 16 11 N -0.65 -18.51 5.69 -350.65 -1.99 -20.51 16 12 C 0.14 4.61 5.69 86.38 0.49 5.10 16 13 C -0.11 -3.87 5.27 30.59 0.16 -3.71 16 14 C 0.03 1.31 4.97 29.85 0.15 1.46 16 15 C -0.54 -29.51 9.11 25.60 0.23 -29.28 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 18 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 19 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 N -0.62 -18.75 10.56 -315.82 -3.34 -22.09 16 24 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.08 1.20 8.11 -2.39 -0.02 1.18 16 30 H 0.08 1.20 8.11 -2.39 -0.02 1.18 16 31 H 0.43 10.52 8.59 -92.71 -0.80 9.72 16 32 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -64.06 346.68 -0.43 -64.49 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.28 Total: 7.23 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: 8.03 Total: 27.79 kcal Atomic # 7 Polarization: -128.85 SS G_CDS: -9.81 Total: -138.65 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.88 Total: -7.60 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: 1.40 SS G_CDS: -0.08 Total: 1.32 kcal Total: -64.06 -0.43 -64.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427509.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.741 kcal (2) G-P(sol) polarization free energy of solvation -64.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds