Wall clock time and date at job start Fri Apr 10 2020 20:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30578 * 1 3 3 Si 1.86808 * 120.00382 * 2 1 4 4 H 1.48500 * 109.46697 * 269.99942 * 3 2 1 5 5 H 1.48496 * 109.46847 * 29.99869 * 3 2 1 6 6 H 1.48500 * 109.47068 * 149.99750 * 3 2 1 7 7 C 1.40354 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00887 * 197.04132 * 7 2 1 9 9 C 1.40183 * 119.99391 * 17.04193 * 7 2 1 10 10 C 1.39072 * 119.74135 * 203.03915 * 9 7 2 11 11 C 1.42028 * 118.74174 * 180.24694 * 10 9 7 12 12 N 1.32215 * 120.83452 * 179.75094 * 11 10 9 13 13 C 1.46499 * 120.00150 * 185.89322 * 12 11 10 14 14 H 1.08998 * 109.46679 * 6.81043 * 13 12 11 15 15 C 1.52996 * 109.46823 * 126.81158 * 13 12 11 16 16 C 1.53780 * 113.61768 * 299.99681 * 15 13 12 17 17 C 1.53781 * 87.08459 * 219.94002 * 16 15 13 18 18 C 1.53782 * 87.17044 * 25.39079 * 17 16 15 19 19 C 1.53001 * 109.47156 * 246.81200 * 13 12 11 20 20 F 1.39903 * 109.46841 * 300.00005 * 19 13 12 21 21 F 1.39897 * 109.46920 * 59.99685 * 19 13 12 22 22 F 1.39899 * 109.47060 * 180.02562 * 19 13 12 23 23 C 1.46916 * 118.33143 * 359.47830 * 11 10 9 24 24 C 1.34380 * 119.36722 * 0.25203 * 23 11 10 25 25 N 1.36417 * 121.22319 * 0.02562 * 24 23 11 26 26 H 0.97007 * 119.08760 * 179.97438 * 25 24 23 27 27 H 0.97003 * 119.99362 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.63212 * 359.97254 * 10 9 7 29 29 H 1.08997 * 112.85481 * 71.20049 * 15 13 12 30 30 H 1.09008 * 113.61407 * 105.38510 * 16 15 13 31 31 H 1.09002 * 113.68943 * 334.49849 * 16 15 13 32 32 H 1.08999 * 113.61360 * 139.98653 * 17 16 15 33 33 H 1.09000 * 113.60928 * 270.80048 * 17 16 15 34 34 H 1.09002 * 113.61162 * 89.16147 * 18 17 16 35 35 H 1.08999 * 113.60970 * 220.05888 * 18 17 16 36 36 H 1.07994 * 120.31437 * 180.27547 * 23 11 10 37 37 H 1.08001 * 119.38513 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 2.4874 2.0463 -1.4001 5 1 1.4374 2.6527 0.7000 6 1 3.5374 1.4401 0.7001 7 6 2.0076 -1.2155 0.0005 8 1 3.0521 -1.2360 0.2746 9 6 1.3528 -2.4030 -0.3547 10 6 1.8518 -3.6242 0.0853 11 6 1.1746 -4.8144 -0.2916 12 7 1.6157 -5.9979 0.0994 13 6 0.9817 -7.2189 -0.4040 14 1 0.2543 -6.9599 -1.1733 15 6 2.0488 -8.1391 -0.9999 16 6 2.8229 -7.5084 -2.1695 17 6 2.7565 -8.8845 -2.8526 18 6 1.4945 -9.1541 -2.0162 19 6 0.2734 -7.9372 0.7464 20 9 1.2070 -8.2696 1.7339 21 9 -0.7023 -7.0957 1.2913 22 9 -0.3316 -9.1035 0.2658 23 6 -0.0318 -4.6971 -1.1219 24 6 -0.4541 -3.4795 -1.5023 25 7 0.2167 -2.3508 -1.1322 26 1 -0.1154 -1.4875 -1.4246 27 1 -0.4849 0.8401 -0.0004 28 1 2.7398 -3.6671 0.6983 29 1 2.6914 -8.5882 -0.2427 30 1 3.8348 -7.1993 -1.9072 31 1 2.2663 -6.7326 -2.6953 32 1 2.5668 -8.8311 -3.9247 33 1 3.5934 -9.5367 -2.6029 34 1 0.5730 -8.8294 -2.4994 35 1 1.4356 -10.1719 -1.6305 36 1 -0.5741 -5.5810 -1.4233 37 1 -1.3407 -3.3929 -2.1130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169287521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:03 Heat of formation + Delta-G solvation = -106.770669 kcal Electronic energy + Delta-G solvation = -24745.684616 eV Core-core repulsion = 20687.012897 eV Total energy + Delta-G solvation = -4058.671719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.32931 -46.88970 -46.77425 -38.90093 -38.39356 -34.90791 -33.66554 -30.90730 -30.35446 -27.49564 -25.97659 -25.20613 -24.65345 -22.09424 -21.54830 -20.16211 -19.16083 -18.29281 -17.62166 -17.56128 -16.86583 -16.72479 -15.63295 -15.20667 -14.86391 -14.45126 -14.06727 -13.80722 -13.59285 -13.56409 -13.28951 -13.05982 -13.01056 -12.98376 -12.89633 -12.19377 -12.13661 -12.07034 -11.70452 -11.62127 -11.21170 -11.15934 -10.92429 -10.78418 -10.49821 -10.29410 -10.13238 -9.91700 -9.80005 -9.43605 -8.37251 -7.74536 -7.40861 -6.17310 -4.93396 2.46882 2.55980 2.82392 2.87343 3.00681 3.56399 3.59618 4.12267 4.45900 4.62584 4.75930 4.81724 4.99592 5.03344 5.15724 5.29238 5.32707 5.47327 5.70568 5.84962 6.03042 6.07153 6.08193 6.11458 6.18547 6.32628 6.42618 6.55647 6.57110 6.63989 6.72916 6.83333 7.24557 7.49348 7.63224 7.84615 8.07211 8.16426 8.65063 8.76896 9.47319 9.58537 Molecular weight = 300.11amu Principal moments of inertia in cm(-1) A = 0.022316 B = 0.004009 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.388173 B = 6981.915468 C = 7426.965922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.077 3.923 3 Si 0.926 3.074 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.462 4.462 8 H 0.106 0.894 9 C 0.333 3.667 10 C -0.351 4.351 11 C 0.298 3.702 12 N -0.660 5.660 13 C 0.066 3.934 14 H 0.070 0.930 15 C -0.092 4.092 16 C -0.112 4.112 17 C -0.144 4.144 18 C -0.138 4.138 19 C 0.444 3.556 20 F -0.184 7.184 21 F -0.190 7.190 22 F -0.201 7.201 23 C -0.306 4.306 24 C 0.132 3.868 25 N -0.598 5.598 26 H 0.415 0.585 27 H 0.294 0.706 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 -5.112 -5.845 7.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.143 4.143 3 Si 0.749 3.251 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.495 4.495 8 H 0.124 0.876 9 C 0.224 3.776 10 C -0.380 4.380 11 C 0.141 3.859 12 N -0.390 5.390 13 C -0.049 4.049 14 H 0.087 0.913 15 C -0.112 4.112 16 C -0.150 4.150 17 C -0.182 4.182 18 C -0.176 4.176 19 C 0.388 3.612 20 F -0.165 7.165 21 F -0.172 7.172 22 F -0.183 7.183 23 C -0.336 4.336 24 C 0.002 3.998 25 N -0.209 5.209 26 H 0.255 0.745 27 H 0.106 0.894 28 H 0.135 0.865 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.133 0.867 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.423 -5.477 -5.271 7.613 hybrid contribution -1.035 0.925 -0.297 1.420 sum -1.458 -4.552 -5.567 7.338 Atomic orbital electron populations 1.69327 1.07890 1.31139 1.35242 1.26238 0.94959 1.02584 0.90485 0.85975 0.80616 0.78756 0.79728 1.18834 1.19905 1.17872 1.19581 0.99446 0.89575 1.40868 0.87622 1.17674 0.81403 0.94439 0.84126 1.20215 1.09679 0.87834 1.20226 1.20290 0.87220 0.92864 0.85566 1.73698 1.35122 0.94102 1.36090 1.22373 0.95638 0.95848 0.91036 0.91275 1.22484 0.97130 0.95389 0.96149 1.22628 1.00703 0.95733 0.95894 1.22838 0.98153 0.98304 0.98887 1.23056 0.97681 0.99242 0.97616 1.21574 0.77098 0.76675 0.85805 1.93097 1.65603 1.92794 1.65037 1.93124 1.64902 1.71434 1.87711 1.93087 1.84896 1.52096 1.88207 1.22246 1.03919 0.95662 1.11728 1.21265 0.95078 0.87343 0.96103 1.42137 1.25142 1.08625 1.44946 0.74490 0.89431 0.86499 0.88942 0.91459 0.90454 0.91897 0.90557 0.90397 0.91684 0.86696 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -16.92 11.12 55.57 0.62 -16.30 16 2 C 0.08 1.58 5.18 -17.29 -0.09 1.50 16 3 Si 0.93 15.68 29.60 -169.99 -5.03 10.65 16 4 H -0.26 -4.38 7.11 56.52 0.40 -3.98 16 5 H -0.27 -4.62 7.11 56.52 0.40 -4.21 16 6 H -0.26 -4.39 7.11 56.52 0.40 -3.99 16 7 C -0.46 -10.43 9.03 -38.06 -0.34 -10.78 16 8 H 0.11 2.33 7.91 -52.49 -0.42 1.91 16 9 C 0.33 7.73 6.36 -84.16 -0.54 7.20 16 10 C -0.35 -8.54 9.83 -37.82 -0.37 -8.91 16 11 C 0.30 6.96 6.80 -82.74 -0.56 6.40 16 12 N -0.66 -15.20 9.81 -50.79 -0.50 -15.69 16 13 C 0.07 1.29 1.97 -67.93 -0.13 1.15 16 14 H 0.07 1.32 5.15 -51.93 -0.27 1.06 16 15 C -0.09 -1.57 3.15 -89.72 -0.28 -1.85 16 16 C -0.11 -1.77 7.40 -25.92 -0.19 -1.96 16 17 C -0.14 -1.85 8.08 -25.92 -0.21 -2.06 16 18 C -0.14 -1.92 6.75 -25.83 -0.17 -2.10 16 19 C 0.44 8.83 2.82 37.16 0.10 8.93 16 20 F -0.18 -3.82 16.66 2.25 0.04 -3.78 16 21 F -0.19 -4.09 17.24 2.25 0.04 -4.05 16 22 F -0.20 -3.59 16.24 2.25 0.04 -3.55 16 23 C -0.31 -6.24 9.34 -37.43 -0.35 -6.59 16 24 C 0.13 2.47 11.15 -16.87 -0.19 2.28 16 25 N -0.60 -12.37 4.88 -10.83 -0.05 -12.42 16 26 H 0.41 8.17 6.34 -40.82 -0.26 7.91 16 27 H 0.29 5.54 8.29 -40.82 -0.34 5.20 16 28 H 0.12 2.92 8.06 -52.49 -0.42 2.50 16 29 H 0.09 1.63 7.72 -51.93 -0.40 1.23 16 30 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.06 7.98 -51.93 -0.41 0.64 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.12 2.16 6.01 -52.49 -0.32 1.84 16 37 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 320.92 15.07 4.84 4.84 Total: -1.00 -25.27 320.92 -7.51 -32.77 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -4.16 Total: 14.34 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -3.33 Total: -6.79 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.07 Total: -44.42 kcal Atomic # 9 Polarization: -11.50 SS G_CDS: 0.11 Total: -11.38 kcal Atomic # 14 Polarization: 15.68 SS G_CDS: -5.03 Total: 10.65 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -25.27 -7.51 -32.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169287521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.997 kcal (2) G-P(sol) polarization free energy of solvation -25.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds