Wall clock time and date at job start Fri Apr 10 2020 20:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00075 * 2 1 4 4 C 1.50705 * 109.46915 * 275.00106 * 3 2 1 5 5 N 1.33242 * 125.52525 * 89.99877 * 4 3 2 6 6 C 1.30833 * 109.83009 * 179.97438 * 5 4 3 7 7 N 1.34427 * 108.07569 * 0.02562 * 6 5 4 8 8 H 0.96994 * 126.82311 * 179.73557 * 7 6 5 9 9 N 1.30704 * 125.52941 * 269.99658 * 4 3 2 10 10 S 1.65595 * 120.00072 * 180.02562 * 2 1 3 11 11 O 1.42103 * 104.27885 * 26.06736 * 10 2 1 12 12 O 1.42099 * 104.27769 * 153.92829 * 10 2 1 13 13 C 1.81404 * 104.44986 * 269.99613 * 10 2 1 14 14 C 1.53001 * 109.47238 * 174.00931 * 13 10 2 15 15 C 1.50703 * 115.54406 * 65.27812 * 14 13 10 16 16 H 1.07995 * 120.00050 * 268.54005 * 15 14 13 17 17 C 1.37876 * 119.99955 * 88.55224 * 15 14 13 18 18 N 1.31520 * 120.00084 * 174.69654 * 17 15 14 19 19 Si 1.86804 * 120.00038 * 354.68887 * 17 15 14 20 20 H 1.48504 * 109.47069 * 92.55853 * 19 17 15 21 21 H 1.48492 * 109.47303 * 212.55636 * 19 17 15 22 22 H 1.48495 * 109.47108 * 332.55906 * 19 17 15 23 23 C 1.52995 * 117.50324 * 279.60762 * 14 13 10 24 24 C 1.52998 * 117.50078 * 210.94363 * 14 13 10 25 25 H 1.09002 * 109.47469 * 90.00223 * 1 2 3 26 26 H 1.09001 * 109.46784 * 210.00096 * 1 2 3 27 27 H 1.08999 * 109.47336 * 329.99720 * 1 2 3 28 28 H 1.08994 * 109.47275 * 155.00591 * 3 2 1 29 29 H 1.09003 * 109.47059 * 34.99609 * 3 2 1 30 30 H 1.08000 * 125.96247 * 179.97438 * 6 5 4 31 31 H 1.08994 * 109.46927 * 294.01442 * 13 10 2 32 32 H 1.09002 * 109.47127 * 54.01410 * 13 10 2 33 33 H 0.96996 * 119.99387 * 179.97438 * 18 17 15 34 34 H 1.09007 * 117.49688 * 0.02562 * 23 14 13 35 35 H 1.08999 * 117.50063 * 145.01567 * 23 14 13 36 36 H 1.08995 * 117.50018 * 214.97960 * 24 14 13 37 37 H 1.08998 * 117.49933 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4155 5 7 1.4798 2.5611 -2.0481 6 6 1.9056 2.8006 -3.2618 7 7 3.0696 2.1498 -3.4314 8 1 3.6176 2.1377 -4.2316 9 7 3.3316 1.4863 -2.2216 10 16 2.2930 -1.4341 -0.0006 11 8 1.3969 -2.3559 -0.6062 12 8 3.5394 -1.1188 -0.6057 13 6 2.5194 -1.8268 1.7558 14 6 3.1473 -3.2155 1.8911 15 6 4.5474 -3.3511 1.3503 16 1 4.7036 -3.6604 0.3275 17 6 5.6290 -3.0805 2.1615 18 7 6.8500 -3.2985 1.7240 19 14 5.3601 -2.4042 3.8820 20 1 5.2985 -3.5275 4.8514 21 1 6.4838 -1.5022 4.2405 22 1 4.0842 -1.6455 3.9218 23 6 2.2201 -4.4257 1.7628 24 6 2.7862 -4.0364 3.1307 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 3.1858 1.1177 0.4342 29 1 1.6501 2.0043 0.5894 30 1 1.4084 3.4134 -3.9991 31 1 3.1752 -1.0855 2.2122 32 1 1.5522 -1.8149 2.2584 33 1 7.6108 -3.1078 2.2947 34 1 1.1627 -4.2326 1.5815 35 1 2.6228 -5.3201 1.2875 36 1 3.5610 -4.6749 3.5548 37 1 2.1016 -3.5870 3.8501 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663702579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:23 Heat of formation + Delta-G solvation = 57.353268 kcal Electronic energy + Delta-G solvation = -23184.250508 eV Core-core repulsion = 19706.456085 eV Total energy + Delta-G solvation = -3477.794423 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.05780 -37.11843 -36.38164 -36.29511 -35.04041 -32.54098 -32.13657 -31.35398 -28.48827 -28.01042 -25.56638 -24.88597 -22.70217 -21.70098 -20.60593 -19.40651 -18.54350 -18.11220 -17.02254 -16.64786 -16.10637 -15.53891 -15.17935 -15.11044 -14.82112 -14.28792 -14.01360 -13.88721 -13.00759 -12.86140 -12.74030 -12.53462 -12.30982 -12.04568 -12.00380 -11.36704 -11.18273 -11.13179 -11.02037 -10.90254 -10.63161 -10.35141 -10.14577 -10.08398 -10.02567 -9.71997 -9.71316 -9.14423 -9.08916 -8.63678 -8.41806 -6.14258 -4.21527 0.89127 1.65293 2.68730 2.77107 3.24161 3.33905 3.35236 3.40977 4.06632 4.37212 4.52878 4.59917 4.78744 4.84367 4.86698 5.02056 5.09125 5.40632 5.47989 5.53538 5.62625 5.73840 5.91432 5.94768 6.04247 6.10791 6.20131 6.22099 6.38303 6.44130 6.64250 6.71703 6.90426 7.00933 7.07675 7.61836 8.08175 8.39588 8.91439 9.46895 10.97285 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.005517 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.886183 B = 5073.568940 C = 5638.960076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.008 6.008 3 C 0.219 3.781 4 C 0.201 3.799 5 N -0.537 5.537 6 C 0.249 3.751 7 N -0.488 5.488 8 H 0.441 0.559 9 N -0.266 5.266 10 S 2.605 3.395 11 O -0.964 6.964 12 O -0.919 6.919 13 C -0.576 4.576 14 C 0.001 3.999 15 C -0.508 4.508 16 H 0.086 0.914 17 C 0.089 3.911 18 N -0.882 5.882 19 Si 0.873 3.127 20 H -0.276 1.276 21 H -0.290 1.290 22 H -0.256 1.256 23 C -0.177 4.177 24 C -0.185 4.185 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.220 0.780 31 H 0.127 0.873 32 H 0.105 0.895 33 H 0.267 0.733 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.292 12.740 -4.295 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.843 5.843 3 C 0.090 3.910 4 C -0.083 4.083 5 N -0.265 5.265 6 C -0.051 4.051 7 N -0.206 5.206 8 H 0.286 0.714 9 N -0.095 5.095 10 S 2.700 3.300 11 O -0.955 6.955 12 O -0.909 6.909 13 C -0.708 4.708 14 C -0.002 4.002 15 C -0.545 4.545 16 H 0.104 0.896 17 C -0.116 4.116 18 N -0.518 5.518 19 Si 0.700 3.300 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.180 1.180 23 C -0.215 4.215 24 C -0.223 4.223 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.236 0.764 31 H 0.145 0.855 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.562 11.978 -4.642 17.283 hybrid contribution 0.095 0.751 0.795 1.098 sum -11.467 12.729 -3.846 17.559 Atomic orbital electron populations 1.21385 0.78657 1.02503 1.02066 1.58046 1.15267 1.21098 1.89940 1.19373 0.98639 0.86070 0.86930 1.24838 0.89077 0.95428 0.99005 1.70369 1.30883 1.19967 1.05327 1.26041 0.86751 0.96413 0.95868 1.48327 1.19958 1.38004 1.14321 0.71368 1.78459 1.23096 1.16507 0.91419 1.05498 0.73813 0.72328 0.78320 1.93503 1.65614 1.61973 1.74365 1.93643 1.42339 1.81603 1.73304 1.30350 1.07685 1.08638 1.24102 1.18865 0.96185 0.84738 1.00370 1.20328 0.85574 1.48204 1.00377 0.89566 1.24944 0.94752 0.93755 0.98121 1.69900 0.98222 1.46313 1.37326 0.86937 0.78272 0.79759 0.85000 1.20146 1.21675 1.18034 1.23022 0.97598 1.00756 1.00102 1.22987 1.03153 1.05292 0.90917 0.92903 0.91196 0.91034 0.87372 0.87688 0.76387 0.85522 0.87644 0.92324 0.90047 0.88659 0.88912 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.24 10.24 59.85 0.61 1.86 16 2 N -1.01 -15.70 3.10 -123.05 -0.38 -16.09 16 3 C 0.22 3.14 5.90 -5.19 -0.03 3.11 16 4 C 0.20 3.18 7.72 -156.86 -1.21 1.97 16 5 N -0.54 -7.25 11.19 -11.98 -0.13 -7.38 16 6 C 0.25 2.44 13.13 -90.66 -1.19 1.25 16 7 N -0.49 -5.56 7.45 29.53 0.22 -5.34 16 8 H 0.44 3.31 8.96 -182.34 -1.63 1.67 16 9 N -0.27 -4.53 12.80 32.42 0.41 -4.12 16 10 S 2.60 52.99 5.06 -107.50 -0.54 52.45 16 11 O -0.96 -21.33 17.09 -57.54 -0.98 -22.31 16 12 O -0.92 -22.24 16.65 -57.54 -0.96 -23.19 16 13 C -0.58 -11.34 5.65 37.16 0.21 -11.13 16 14 C 0.00 0.03 0.79 -155.66 -0.12 -0.10 16 15 C -0.51 -14.30 8.77 -34.44 -0.30 -14.60 16 16 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 17 C 0.09 2.54 5.47 -17.82 -0.10 2.45 16 18 N -0.88 -26.88 13.96 55.43 0.77 -26.11 16 19 Si 0.87 21.01 24.96 -169.99 -4.24 16.77 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.26 -5.62 5.68 56.52 0.32 -5.30 16 23 C -0.18 -3.71 9.96 -26.70 -0.27 -3.97 16 24 C -0.18 -3.85 7.67 -26.69 -0.20 -4.06 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 27 H 0.07 0.68 7.94 -51.93 -0.41 0.26 16 28 H 0.11 1.57 7.61 -51.93 -0.40 1.17 16 29 H 0.11 1.11 7.96 -51.93 -0.41 0.70 16 30 H 0.22 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.13 2.43 6.53 -51.93 -0.34 2.09 16 32 H 0.11 1.66 8.09 -51.92 -0.42 1.24 16 33 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 36 H 0.09 2.01 7.34 -51.93 -0.38 1.63 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 326.65 15.07 4.92 4.92 Total: -1.00 -38.92 326.65 -9.67 -48.59 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.15 Total: 5.05 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -2.60 Total: -23.24 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.89 Total: -59.03 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -1.94 Total: -45.51 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.24 Total: 16.77 kcal Atomic # 16 Polarization: 52.99 SS G_CDS: -0.54 Total: 52.45 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -38.92 -9.67 -48.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663702579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.939 kcal (2) G-P(sol) polarization free energy of solvation -38.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds