Wall clock time and date at job start Fri Apr 10 2020 20:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00075 * 2 1 4 4 C 1.50705 * 109.46915 * 275.00106 * 3 2 1 5 5 N 1.33242 * 125.52525 * 89.99877 * 4 3 2 6 6 C 1.30833 * 109.83009 * 179.97438 * 5 4 3 7 7 N 1.34427 * 108.07569 * 0.02562 * 6 5 4 8 8 H 0.96994 * 126.82311 * 179.73557 * 7 6 5 9 9 N 1.30704 * 125.52941 * 269.99658 * 4 3 2 10 10 S 1.65595 * 120.00072 * 180.02562 * 2 1 3 11 11 O 1.42103 * 104.27885 * 26.06736 * 10 2 1 12 12 O 1.42099 * 104.27769 * 153.92829 * 10 2 1 13 13 C 1.81404 * 104.44986 * 269.99613 * 10 2 1 14 14 C 1.53001 * 109.47238 * 174.00931 * 13 10 2 15 15 C 1.50703 * 115.54406 * 65.27812 * 14 13 10 16 16 H 1.07995 * 120.00050 * 268.54005 * 15 14 13 17 17 C 1.37876 * 119.99955 * 88.55224 * 15 14 13 18 18 N 1.31520 * 120.00084 * 174.69654 * 17 15 14 19 19 Si 1.86804 * 120.00038 * 354.68887 * 17 15 14 20 20 H 1.48504 * 109.47069 * 92.55853 * 19 17 15 21 21 H 1.48492 * 109.47303 * 212.55636 * 19 17 15 22 22 H 1.48495 * 109.47108 * 332.55906 * 19 17 15 23 23 C 1.52995 * 117.50324 * 279.60762 * 14 13 10 24 24 C 1.52998 * 117.50078 * 210.94363 * 14 13 10 25 25 H 1.09002 * 109.47469 * 90.00223 * 1 2 3 26 26 H 1.09001 * 109.46784 * 210.00096 * 1 2 3 27 27 H 1.08999 * 109.47336 * 329.99720 * 1 2 3 28 28 H 1.08994 * 109.47275 * 155.00591 * 3 2 1 29 29 H 1.09003 * 109.47059 * 34.99609 * 3 2 1 30 30 H 1.08000 * 125.96247 * 179.97438 * 6 5 4 31 31 H 1.08994 * 109.46927 * 294.01442 * 13 10 2 32 32 H 1.09002 * 109.47127 * 54.01410 * 13 10 2 33 33 H 0.96996 * 119.99387 * 179.97438 * 18 17 15 34 34 H 1.09007 * 117.49688 * 0.02562 * 23 14 13 35 35 H 1.08999 * 117.50063 * 145.01567 * 23 14 13 36 36 H 1.08995 * 117.50018 * 214.97960 * 24 14 13 37 37 H 1.08998 * 117.49933 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4155 5 7 1.4798 2.5611 -2.0481 6 6 1.9056 2.8006 -3.2618 7 7 3.0696 2.1498 -3.4314 8 1 3.6176 2.1377 -4.2316 9 7 3.3316 1.4863 -2.2216 10 16 2.2930 -1.4341 -0.0006 11 8 1.3969 -2.3559 -0.6062 12 8 3.5394 -1.1188 -0.6057 13 6 2.5194 -1.8268 1.7558 14 6 3.1473 -3.2155 1.8911 15 6 4.5474 -3.3511 1.3503 16 1 4.7036 -3.6604 0.3275 17 6 5.6290 -3.0805 2.1615 18 7 6.8500 -3.2985 1.7240 19 14 5.3601 -2.4042 3.8820 20 1 5.2985 -3.5275 4.8514 21 1 6.4838 -1.5022 4.2405 22 1 4.0842 -1.6455 3.9218 23 6 2.2201 -4.4257 1.7628 24 6 2.7862 -4.0364 3.1307 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 3.1858 1.1177 0.4342 29 1 1.6501 2.0043 0.5894 30 1 1.4084 3.4134 -3.9991 31 1 3.1752 -1.0855 2.2122 32 1 1.5522 -1.8149 2.2584 33 1 7.6108 -3.1078 2.2947 34 1 1.1627 -4.2326 1.5815 35 1 2.6228 -5.3201 1.2875 36 1 3.5610 -4.6749 3.5548 37 1 2.1016 -3.5870 3.8501 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663702579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:23 Heat of formation + Delta-G solvation = 25.957225 kcal Electronic energy + Delta-G solvation = -23185.611942 eV Core-core repulsion = 19706.456085 eV Total energy + Delta-G solvation = -3479.155857 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.01145 -38.84835 -38.00677 -37.47251 -36.69591 -34.28221 -33.51176 -32.35580 -30.08308 -29.03437 -27.62872 -26.03009 -23.58688 -23.34278 -21.70464 -21.19488 -19.82778 -19.25981 -18.54740 -18.38316 -17.37267 -17.10672 -16.76752 -16.32884 -16.02740 -15.52954 -15.39769 -15.30468 -14.81089 -14.58020 -13.96761 -13.86703 -13.82821 -13.20817 -13.15304 -13.01033 -12.91080 -12.66383 -12.56357 -12.40973 -12.36262 -12.03807 -11.74146 -11.68014 -11.09038 -11.03484 -10.96120 -10.77378 -10.71828 -10.43783 -10.00632 -8.30861 -6.44213 -0.62953 0.71813 1.37003 1.38809 1.52269 1.69897 1.87942 2.14691 2.37429 2.94308 3.02024 3.16207 3.25580 3.35101 3.59257 3.78006 4.02717 4.13868 4.23070 4.33160 4.38231 4.46994 4.58724 4.62107 4.72040 4.86092 4.98431 5.03690 5.06342 5.21905 5.27719 5.37151 5.45318 5.57519 5.62795 6.20484 6.29263 6.66869 7.12600 7.28382 8.85698 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.005517 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.886183 B = 5073.568940 C = 5638.960076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.997 5.997 3 C 0.210 3.790 4 C 0.190 3.810 5 N -0.558 5.558 6 C 0.269 3.731 7 N -0.484 5.484 8 H 0.455 0.545 9 N -0.334 5.334 10 S 2.605 3.395 11 O -0.993 6.993 12 O -0.975 6.975 13 C -0.568 4.568 14 C -0.034 4.034 15 C -0.512 4.512 16 H 0.024 0.976 17 C 0.025 3.975 18 N -0.943 5.943 19 Si 0.934 3.066 20 H -0.262 1.262 21 H -0.295 1.295 22 H -0.211 1.211 23 C -0.176 4.176 24 C -0.165 4.165 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.148 0.852 30 H 0.278 0.722 31 H 0.134 0.866 32 H 0.159 0.841 33 H 0.268 0.732 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.877 15.002 -2.126 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.835 5.835 3 C 0.082 3.918 4 C -0.095 4.095 5 N -0.287 5.287 6 C -0.029 4.029 7 N -0.204 5.204 8 H 0.303 0.697 9 N -0.165 5.165 10 S 2.703 3.297 11 O -0.983 6.983 12 O -0.964 6.964 13 C -0.700 4.700 14 C -0.037 4.037 15 C -0.549 4.549 16 H 0.042 0.958 17 C -0.174 4.174 18 N -0.581 5.581 19 Si 0.756 3.244 20 H -0.187 1.187 21 H -0.222 1.222 22 H -0.133 1.133 23 C -0.213 4.213 24 C -0.204 4.204 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.129 0.871 28 H 0.114 0.886 29 H 0.165 0.835 30 H 0.293 0.707 31 H 0.153 0.847 32 H 0.177 0.823 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.176 14.234 -2.524 20.959 hybrid contribution 1.176 0.050 -0.099 1.181 sum -14.000 14.283 -2.623 20.172 Atomic orbital electron populations 1.21695 0.76395 1.05029 1.02230 1.57561 1.16389 1.19826 1.89761 1.19693 0.98780 0.86135 0.87202 1.25088 0.89236 0.95714 0.99486 1.70371 1.31108 1.20492 1.06749 1.27171 0.85416 0.94644 0.95666 1.48246 1.20861 1.37639 1.13611 0.69734 1.78354 1.25253 1.19150 0.93730 1.05085 0.72815 0.72926 0.78844 1.93451 1.65798 1.63611 1.75447 1.93581 1.45169 1.82636 1.75046 1.30170 1.10318 1.06141 1.23416 1.18793 0.94179 0.87454 1.03266 1.20421 0.89179 1.47418 0.97895 0.95787 1.25987 0.94000 0.94004 1.03435 1.70082 0.99617 1.48802 1.39636 0.85963 0.80045 0.79769 0.78619 1.18696 1.22180 1.13294 1.23101 0.98721 0.98969 1.00500 1.23102 1.02999 1.03447 0.90843 0.94057 0.89999 0.87116 0.88572 0.83482 0.70676 0.84749 0.82327 0.92324 0.86896 0.90438 0.90233 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.97 10.24 127.77 1.31 3.28 16 2 N -1.00 -29.17 3.10 -543.22 -1.68 -30.85 16 3 C 0.21 5.71 5.90 85.63 0.51 6.21 16 4 C 0.19 5.85 7.72 138.63 1.07 6.92 16 5 N -0.56 -13.90 11.19 -191.80 -2.15 -16.04 16 6 C 0.27 4.59 13.13 180.36 2.37 6.96 16 7 N -0.48 -10.69 7.45 -60.49 -0.45 -11.14 16 8 H 0.45 6.59 8.96 -213.10 -1.91 4.68 16 9 N -0.33 -11.64 12.80 -51.33 -0.66 -12.30 16 10 S 2.61 105.43 5.06 -56.49 -0.29 105.15 16 11 O -0.99 -43.90 17.09 -127.65 -2.18 -46.08 16 12 O -0.97 -49.63 16.65 -127.65 -2.12 -51.76 16 13 C -0.57 -20.61 5.65 71.98 0.41 -20.21 16 14 C -0.03 -1.54 0.79 -52.93 -0.04 -1.59 16 15 C -0.51 -29.99 8.77 25.60 0.22 -29.76 16 16 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 17 C 0.02 1.44 5.47 84.65 0.46 1.90 16 18 N -0.94 -60.70 13.96 21.45 0.30 -60.40 16 19 Si 0.93 42.32 24.96 68.60 1.71 44.03 16 20 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.21 -7.97 5.68 99.48 0.57 -7.41 16 23 C -0.18 -7.00 9.96 30.62 0.30 -6.69 16 24 C -0.17 -6.25 7.67 30.62 0.23 -6.02 16 25 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.08 1.58 7.79 -2.39 -0.02 1.56 16 27 H 0.11 1.55 7.94 -2.39 -0.02 1.53 16 28 H 0.10 2.79 7.61 -2.39 -0.02 2.77 16 29 H 0.15 2.62 7.96 -2.39 -0.02 2.60 16 30 H 0.28 0.92 8.06 -2.91 -0.02 0.90 16 31 H 0.13 4.69 6.53 -2.39 -0.02 4.67 16 32 H 0.16 4.02 8.09 -2.39 -0.02 4.00 16 33 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 34 H 0.11 3.77 8.14 -2.38 -0.02 3.75 16 35 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.08 3.23 7.34 -2.39 -0.02 3.21 16 37 H 0.12 3.52 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -93.22 326.65 -1.63 -94.85 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.95 Total: 23.54 kcal Atomic # 6 Polarization: -45.83 SS G_CDS: 6.84 Total: -38.99 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -4.64 Total: -130.73 kcal Atomic # 8 Polarization: -93.53 SS G_CDS: -4.31 Total: -97.84 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.71 Total: 44.03 kcal Atomic # 16 Polarization: 105.43 SS G_CDS: -0.29 Total: 105.15 kcal Total: -93.22 -1.63 -94.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663702579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.803 kcal (2) G-P(sol) polarization free energy of solvation -93.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds