Wall clock time and date at job start Fri Apr 10 2020 20:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34239 * 126.28127 * 2 1 4 4 H 0.96998 * 125.73678 * 0.03459 * 3 2 1 5 5 N 1.39934 * 108.52300 * 180.02562 * 3 2 1 6 6 C 1.30529 * 108.89458 * 359.74688 * 5 3 2 7 7 Cl 1.73602 * 126.00530 * 180.26491 * 6 5 3 8 8 C 1.38072 * 126.28459 * 179.97438 * 2 1 3 9 9 C 1.47386 * 126.41976 * 359.96127 * 8 2 1 10 10 O 1.21617 * 119.99689 * 89.99583 * 9 8 2 11 11 N 1.34773 * 120.00527 * 270.00440 * 9 8 2 12 12 C 1.46490 * 120.00384 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47559 * 179.97438 * 12 11 9 14 14 H 1.09008 * 109.46613 * 54.99525 * 13 12 11 15 15 C 1.53001 * 109.47108 * 295.00069 * 13 12 11 16 16 C 1.52996 * 109.47530 * 174.99686 * 13 12 11 17 17 N 1.46498 * 109.47059 * 184.99929 * 16 13 12 18 18 C 1.36943 * 119.99752 * 179.72430 * 17 16 13 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47213 * 60.00246 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47081 * 299.99875 * 22 20 18 26 26 H 1.09003 * 109.46996 * 270.00493 * 1 2 3 27 27 H 1.08998 * 109.47247 * 30.00021 * 1 2 3 28 28 H 1.08994 * 109.47119 * 150.00377 * 1 2 3 29 29 H 0.97002 * 119.99300 * 359.97438 * 11 9 8 30 30 H 1.08998 * 109.47374 * 59.99359 * 12 11 9 31 31 H 1.09002 * 109.47263 * 299.99603 * 12 11 9 32 32 H 1.09001 * 109.47309 * 179.97438 * 15 13 12 33 33 H 1.08995 * 109.46988 * 299.99895 * 15 13 12 34 34 H 1.09001 * 109.46786 * 59.99727 * 15 13 12 35 35 H 1.09004 * 109.47066 * 65.00196 * 16 13 12 36 36 H 1.08994 * 109.46974 * 305.00344 * 16 13 12 37 37 H 0.97001 * 120.00384 * 0.02562 * 17 16 13 38 38 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 0.0005 5 7 3.6340 0.6553 -0.0006 6 6 3.6599 -0.6497 0.0045 7 17 5.0842 -1.6422 0.0125 8 6 2.3241 -1.1130 0.0005 9 6 1.8859 -2.5202 0.0019 10 8 1.7045 -3.1016 -1.0507 11 7 1.6861 -3.1627 1.1697 12 6 1.2511 -4.5615 1.1711 13 6 1.1006 -5.0475 2.6140 14 1 0.4262 -4.3820 3.1530 15 6 2.4696 -5.0487 3.2972 16 6 0.5277 -6.4662 2.6174 17 7 0.2720 -6.8863 3.9973 18 6 -0.2506 -8.1266 4.2497 19 1 -0.4701 -8.7968 3.4316 20 6 -0.4984 -8.5226 5.5569 21 7 -0.2314 -7.7056 6.5537 22 14 -1.2106 -10.2147 5.9012 23 1 -0.2884 -11.2554 5.3798 24 1 -1.3802 -10.3918 7.3658 25 1 -2.5299 -10.3421 5.2316 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5137 29 1 1.8310 -2.6990 2.0093 30 1 1.9928 -5.1732 0.6575 31 1 0.2932 -4.6447 0.6576 32 1 2.3624 -5.3945 4.3253 33 1 3.1440 -5.7140 2.7582 34 1 2.8777 -4.0379 3.2948 35 1 1.2428 -7.1478 2.1566 36 1 -0.4050 -6.4826 2.0537 37 1 0.4687 -6.2843 4.7320 38 1 -0.4042 -7.9824 7.4672 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753618480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:24 Heat of formation + Delta-G solvation = 29.436460 kcal Electronic energy + Delta-G solvation = -21509.528911 eV Core-core repulsion = 18028.480218 eV Total energy + Delta-G solvation = -3481.048693 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.90288 -39.34044 -37.13322 -36.76025 -34.31999 -33.12815 -32.55975 -31.55103 -29.97801 -28.05068 -26.44758 -25.31918 -23.06261 -22.34090 -21.95321 -20.35060 -19.62989 -18.24691 -17.14401 -16.59316 -16.24222 -15.61482 -15.51054 -15.23229 -14.66532 -14.36837 -13.89419 -13.68388 -13.59260 -13.48507 -13.01019 -12.88747 -12.54266 -12.29463 -12.24722 -12.06277 -12.01126 -11.10839 -11.04680 -10.88863 -10.69851 -10.56212 -10.41177 -10.16272 -9.94935 -9.84672 -9.65976 -9.15555 -9.01693 -8.86192 -6.91256 -5.76193 -3.04438 1.11378 1.11605 1.80537 2.44052 2.50673 3.29141 3.45231 3.49523 3.50577 4.07270 4.38781 4.59667 4.61605 4.83438 4.95625 5.08726 5.23246 5.27541 5.33798 5.41615 5.54180 5.58808 5.84818 5.99922 6.00696 6.12962 6.27776 6.41987 6.49436 6.53301 6.67784 6.79240 6.85516 6.88934 7.48753 7.70978 8.17871 8.43172 9.54300 10.11905 10.46589 11.46798 Molecular weight = 300.11amu Principal moments of inertia in cm(-1) A = 0.025835 B = 0.002733 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.526260 B =10243.542363 C =10606.049114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.145 3.855 3 N -0.448 5.448 4 H 0.448 0.552 5 N -0.277 5.277 6 C 0.160 3.840 7 Cl 0.024 6.976 8 C -0.270 4.270 9 C 0.594 3.406 10 O -0.530 6.530 11 N -0.713 5.713 12 C 0.126 3.874 13 C -0.110 4.110 14 H 0.076 0.924 15 C -0.142 4.142 16 C 0.161 3.839 17 N -0.731 5.731 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.401 0.599 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.023 0.977 36 H 0.021 0.979 37 H 0.384 0.616 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.829 20.574 -12.674 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.013 3.987 3 N -0.157 5.157 4 H 0.295 0.705 5 N -0.102 5.102 6 C -0.033 4.033 7 Cl 0.051 6.949 8 C -0.286 4.286 9 C 0.378 3.622 10 O -0.406 6.406 11 N -0.364 5.364 12 C 0.002 3.998 13 C -0.129 4.129 14 H 0.095 0.905 15 C -0.200 4.200 16 C 0.032 3.968 17 N -0.375 5.375 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.236 0.764 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.218 0.782 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.481 20.894 -13.451 25.446 hybrid contribution -0.613 -0.758 0.932 1.348 sum 4.867 20.136 -12.520 24.205 Atomic orbital electron populations 1.20669 0.85497 1.05231 1.04701 1.21453 0.94913 0.85928 0.96402 1.45853 1.03030 1.08686 1.58144 0.70529 1.77167 0.96514 1.10739 1.25800 1.22585 0.88904 0.90500 1.01271 1.98437 1.35107 1.64641 1.96684 1.19831 0.91125 0.94635 1.22970 1.17080 0.76994 0.84183 0.83977 1.90810 1.50824 1.67570 1.31411 1.46052 1.68349 1.13774 1.08180 1.21470 1.00366 0.80276 0.97666 1.21550 0.98280 0.99235 0.93832 0.90543 1.21795 0.95766 1.00289 1.02101 1.20574 0.96618 0.90703 0.88858 1.42333 1.77086 1.16905 1.01211 1.19199 1.33858 0.91994 0.91955 0.91203 1.24729 1.02315 0.98371 0.95596 1.69648 1.54445 1.35867 0.98427 0.86258 0.78978 0.84067 0.76826 1.21263 1.21724 1.21283 0.88687 0.89881 0.88568 0.76383 0.91123 0.91141 0.91197 0.92754 0.93851 0.95963 0.96132 0.78210 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.51 10.25 36.00 0.37 -0.14 16 2 C 0.15 1.18 7.29 -81.60 -0.60 0.58 16 3 N -0.45 -3.24 7.28 33.86 0.25 -2.99 16 4 H 0.45 1.48 8.96 -182.73 -1.64 -0.16 16 5 N -0.28 -2.97 12.64 33.18 0.42 -2.55 16 6 C 0.16 1.88 7.89 -16.91 -0.13 1.74 16 7 Cl 0.02 0.27 29.19 -51.86 -1.51 -1.25 16 8 C -0.27 -3.05 5.88 -105.04 -0.62 -3.66 16 9 C 0.59 7.82 7.17 -12.54 -0.09 7.73 16 10 O -0.53 -8.91 17.11 5.26 0.09 -8.82 16 11 N -0.71 -8.37 5.28 -61.40 -0.32 -8.69 16 12 C 0.13 1.68 5.06 -4.05 -0.02 1.66 16 13 C -0.11 -1.64 2.46 -90.62 -0.22 -1.87 16 14 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 15 C -0.14 -2.09 8.94 37.16 0.33 -1.76 16 16 C 0.16 3.13 5.65 -4.04 -0.02 3.10 16 17 N -0.73 -18.10 5.33 -59.91 -0.32 -18.42 16 18 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.94 -28.00 13.06 55.49 0.72 -27.28 16 22 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.10 0.62 7.96 -51.93 -0.41 0.20 16 29 H 0.40 4.02 7.64 -40.82 -0.31 3.70 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.04 0.53 7.18 -51.93 -0.37 0.15 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.38 9.89 6.85 -40.82 -0.28 9.61 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 343.90 15.07 5.18 5.18 Total: -1.00 -34.37 343.90 -8.08 -42.45 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.32 Total: 4.96 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -1.25 Total: 0.08 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 0.75 Total: -59.93 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.51 Total: -1.25 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.37 -8.08 -42.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753618480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.886 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds