Wall clock time and date at job start Fri Apr 10 2020 20:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34231 * 126.28169 * 2 1 4 4 H 0.97005 * 125.73677 * 359.95819 * 3 2 1 5 5 N 1.39930 * 108.52698 * 179.97438 * 3 2 1 6 6 C 1.30532 * 108.88996 * 359.97438 * 5 3 2 7 7 Cl 1.73606 * 126.00251 * 180.02562 * 6 5 3 8 8 C 1.38065 * 126.28229 * 179.68688 * 2 1 3 9 9 C 1.47393 * 126.42205 * 0.03137 * 8 2 1 10 10 O 1.21606 * 119.99704 * 90.00521 * 9 8 2 11 11 N 1.34771 * 119.99960 * 270.00137 * 9 8 2 12 12 C 1.46497 * 119.99973 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47124 * 180.02562 * 12 11 9 14 14 H 1.08996 * 109.47279 * 304.99883 * 13 12 11 15 15 C 1.53001 * 109.46974 * 65.00211 * 13 12 11 16 16 C 1.52999 * 109.46716 * 184.99923 * 13 12 11 17 17 N 1.46502 * 109.46945 * 175.00158 * 16 13 12 18 18 C 1.36936 * 120.00295 * 180.02562 * 17 16 13 19 19 H 1.08004 * 119.99733 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99989 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00391 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99722 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47178 * 59.99992 * 22 20 18 24 24 H 1.48502 * 109.47010 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46997 * 299.99908 * 22 20 18 26 26 H 1.09002 * 109.47152 * 90.02671 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.02772 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.02752 * 1 2 3 29 29 H 0.97003 * 120.00187 * 359.97438 * 11 9 8 30 30 H 1.09004 * 109.47132 * 300.00023 * 12 11 9 31 31 H 1.09004 * 109.47193 * 60.00298 * 12 11 9 32 32 H 1.08994 * 109.46944 * 60.00021 * 15 13 12 33 33 H 1.09003 * 109.46694 * 179.97438 * 15 13 12 34 34 H 1.08999 * 109.46809 * 299.99386 * 15 13 12 35 35 H 1.09000 * 109.47811 * 294.99682 * 16 13 12 36 36 H 1.09004 * 109.47690 * 55.00153 * 16 13 12 37 37 H 0.97003 * 120.00220 * 359.97438 * 17 16 13 38 38 H 0.96992 * 119.99805 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 -0.0006 5 7 3.6340 0.6554 0.0006 6 6 3.6599 -0.6497 0.0015 7 17 5.0843 -1.6422 0.0031 8 6 2.3240 -1.1129 0.0061 9 6 1.8858 -2.5202 0.0131 10 8 1.7057 -3.1061 -1.0371 11 7 1.6850 -3.1576 1.1835 12 6 1.2489 -4.5561 1.1905 13 6 1.0961 -5.0355 2.6355 14 1 2.0287 -4.8684 3.1743 15 6 -0.0320 -4.2564 3.3146 16 6 0.7622 -6.5286 2.6447 17 7 0.7334 -7.0139 4.0267 18 6 0.4542 -8.3294 4.2848 19 1 0.2548 -9.0091 3.4695 20 6 0.4275 -8.7894 5.5943 21 7 0.6710 -7.9612 6.5878 22 14 0.0460 -10.5838 5.9463 23 1 1.0591 -11.4444 5.2844 24 1 0.0795 -10.8186 7.4122 25 1 -1.3034 -10.9150 5.4221 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 0.8902 0.5134 28 1 -0.3633 -0.8898 0.5143 29 1 1.8291 -2.6903 2.0212 30 1 0.2912 -4.6407 0.6768 31 1 1.9905 -5.1705 0.6800 32 1 -0.9646 -4.4236 2.7758 33 1 -0.1411 -4.5982 4.3439 34 1 0.2059 -3.1927 3.3080 35 1 -0.2131 -6.6858 2.1842 36 1 1.5210 -7.0742 2.0838 37 1 0.9129 -6.4036 4.7590 38 1 0.6527 -8.2827 7.5027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753618481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:26 Heat of formation + Delta-G solvation = 29.601340 kcal Electronic energy + Delta-G solvation = -21509.850442 eV Core-core repulsion = 18028.808899 eV Total energy + Delta-G solvation = -3481.041543 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.90481 -39.34318 -37.12454 -36.76435 -34.32064 -33.13391 -32.56255 -31.55180 -29.98196 -28.05065 -26.47352 -25.32109 -23.06196 -22.33857 -21.95125 -20.35879 -19.62449 -18.26919 -17.13945 -16.58206 -16.21177 -15.60943 -15.52819 -15.31669 -14.58636 -14.37267 -13.92933 -13.69804 -13.59126 -13.47427 -13.05572 -12.84934 -12.56785 -12.29017 -12.27288 -12.04376 -12.03315 -11.10552 -11.05588 -10.88914 -10.69902 -10.57378 -10.41952 -10.16237 -9.95058 -9.84335 -9.65843 -9.15640 -9.01973 -8.85982 -6.91067 -5.75901 -3.04155 1.11367 1.12101 1.80657 2.43986 2.50785 3.29036 3.45486 3.49775 3.50840 4.06639 4.38397 4.59185 4.60992 4.83866 4.94934 5.07654 5.23437 5.25967 5.31735 5.40408 5.53623 5.58997 5.82344 5.96813 6.01908 6.12493 6.25246 6.39538 6.48926 6.53167 6.66164 6.79099 6.85535 6.88331 7.48577 7.71227 8.17863 8.43415 9.54576 10.12130 10.46807 11.47096 Molecular weight = 300.11amu Principal moments of inertia in cm(-1) A = 0.024965 B = 0.002750 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.299003 B =10180.512066 C =10579.465767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.145 3.855 3 N -0.448 5.448 4 H 0.448 0.552 5 N -0.277 5.277 6 C 0.160 3.840 7 Cl 0.024 6.976 8 C -0.270 4.270 9 C 0.594 3.406 10 O -0.530 6.530 11 N -0.713 5.713 12 C 0.126 3.874 13 C -0.111 4.111 14 H 0.077 0.923 15 C -0.141 4.141 16 C 0.161 3.839 17 N -0.731 5.731 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.402 0.598 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.022 0.978 36 H 0.021 0.979 37 H 0.384 0.616 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.378 21.600 -12.834 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.013 3.987 3 N -0.157 5.157 4 H 0.295 0.705 5 N -0.102 5.102 6 C -0.033 4.033 7 Cl 0.052 6.948 8 C -0.285 4.285 9 C 0.377 3.623 10 O -0.405 6.405 11 N -0.364 5.364 12 C 0.002 3.998 13 C -0.130 4.130 14 H 0.095 0.905 15 C -0.198 4.198 16 C 0.032 3.968 17 N -0.375 5.375 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.236 0.764 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.218 0.782 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.052 21.909 -13.604 25.870 hybrid contribution -0.398 -0.826 0.932 1.308 sum 1.654 21.082 -12.672 24.653 Atomic orbital electron populations 1.20654 0.85523 1.05051 1.04730 1.21439 0.94891 0.85941 0.96475 1.45848 1.03039 1.08676 1.58154 0.70535 1.77172 0.96489 1.10738 1.25799 1.22595 0.88936 0.90502 1.01227 1.98440 1.35075 1.64618 1.96678 1.19830 0.91137 0.94634 1.22947 1.17078 0.76998 0.84219 0.83956 1.90806 1.50754 1.67319 1.31661 1.46059 1.68328 1.13881 1.08158 1.21471 1.00378 0.80279 0.97634 1.21557 0.99987 0.97604 0.93852 0.90455 1.21789 0.97895 0.97972 1.02188 1.20575 0.97852 0.89485 0.88838 1.42333 1.85304 1.08736 1.01164 1.19198 1.39694 0.86223 0.91899 0.91203 1.24728 1.02764 0.97908 0.95599 1.69642 1.56292 1.33979 0.98469 0.86260 0.78161 0.84877 0.76845 1.21268 1.21722 1.21274 0.88799 0.89846 0.88671 0.76370 0.91140 0.91113 0.92806 0.91176 0.93951 0.95993 0.96091 0.78212 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.49 10.25 36.01 0.37 -0.12 16 2 C 0.14 1.16 7.29 -81.61 -0.60 0.57 16 3 N -0.45 -3.22 7.28 33.86 0.25 -2.98 16 4 H 0.45 1.46 8.96 -182.72 -1.64 -0.18 16 5 N -0.28 -2.98 12.64 33.18 0.42 -2.56 16 6 C 0.16 1.89 7.89 -16.91 -0.13 1.76 16 7 Cl 0.02 0.28 29.19 -51.86 -1.51 -1.23 16 8 C -0.27 -3.05 5.88 -105.04 -0.62 -3.67 16 9 C 0.59 7.82 7.16 -12.54 -0.09 7.73 16 10 O -0.53 -8.91 17.11 5.27 0.09 -8.82 16 11 N -0.71 -8.37 5.28 -61.39 -0.32 -8.69 16 12 C 0.13 1.68 5.06 -4.04 -0.02 1.66 16 13 C -0.11 -1.66 2.46 -90.62 -0.22 -1.88 16 14 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.14 -1.98 8.94 37.16 0.33 -1.65 16 16 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 17 N -0.73 -18.13 5.33 -59.90 -0.32 -18.45 16 18 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.94 -28.05 13.06 55.49 0.72 -27.32 16 22 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.53 7.95 -51.93 -0.41 0.12 16 29 H 0.40 4.02 7.64 -40.82 -0.31 3.70 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 34 H 0.04 0.47 7.18 -51.93 -0.37 0.10 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.38 9.91 6.85 -40.82 -0.28 9.63 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 343.89 15.07 5.18 5.18 Total: -1.00 -34.47 343.89 -8.08 -42.55 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.32 Total: 4.78 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.25 Total: 0.20 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.75 Total: -60.01 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.51 Total: -1.23 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.47 -8.08 -42.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753618481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.149 kcal (2) G-P(sol) polarization free energy of solvation -34.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds