Wall clock time and date at job start Fri Apr 10 2020 20:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 119.99753 * 2 1 4 4 H 1.48494 * 109.47080 * 239.99633 * 3 2 1 5 5 H 1.48506 * 109.47360 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47098 * 119.99959 * 3 2 1 7 7 C 1.38945 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99822 * 199.30042 * 7 2 1 9 9 N 1.37099 * 120.00267 * 19.30042 * 7 2 1 10 10 C 1.34776 * 119.99707 * 42.41337 * 9 7 2 11 11 O 1.21291 * 120.00288 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99793 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47158 * 179.97438 * 12 10 9 14 14 H 1.09001 * 110.57075 * 307.67889 * 13 12 10 15 15 C 1.51394 * 110.51128 * 70.35412 * 13 12 10 16 16 O 1.21288 * 126.44218 * 298.60786 * 15 13 12 17 17 N 1.34368 * 107.11898 * 118.64626 * 15 13 12 18 18 C 1.39533 * 112.24171 * 0.02562 * 17 15 13 19 19 C 1.39374 * 130.82304 * 179.97438 * 18 17 15 20 20 C 1.37940 * 120.13132 * 180.02562 * 19 18 17 21 21 C 1.38311 * 120.37372 * 0.03104 * 20 19 18 22 22 C 1.38393 * 119.82301 * 359.96528 * 21 20 19 23 23 C 1.37678 * 119.91992 * 0.02562 * 22 21 20 24 24 C 1.46498 * 120.00047 * 222.41074 * 9 7 2 25 25 C 1.53004 * 117.49803 * 3.35610 * 24 9 7 26 26 C 1.52999 * 117.50005 * 294.73138 * 24 9 7 27 27 H 0.96995 * 119.99941 * 354.74897 * 1 2 3 28 28 H 1.08998 * 109.47287 * 60.00440 * 12 10 9 29 29 H 1.08996 * 109.47037 * 299.99915 * 12 10 9 30 30 H 0.96994 * 123.88414 * 180.02562 * 17 15 13 31 31 H 1.07996 * 119.93584 * 0.04960 * 19 18 17 32 32 H 1.07997 * 119.81486 * 179.97438 * 20 19 18 33 33 H 1.08001 * 120.08369 * 179.69862 * 21 20 19 34 34 H 1.08000 * 120.03871 * 179.97438 * 22 21 20 35 35 H 1.09002 * 115.54661 * 149.06307 * 24 9 7 36 36 H 1.08998 * 117.50005 * 359.97438 * 25 24 9 37 37 H 1.09004 * 117.49367 * 145.01608 * 25 24 9 38 38 H 1.08997 * 117.49454 * 214.97618 * 26 24 9 39 39 H 1.09002 * 117.50036 * 0.02562 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0434 -1.2294 0.3097 9 7 1.3812 -2.3574 -0.3914 10 6 0.5727 -2.3520 -1.4697 11 8 0.4008 -1.3262 -2.0937 12 6 -0.1168 -3.6208 -1.9008 13 6 -0.9687 -3.3422 -3.1407 14 1 -1.6313 -2.4942 -2.9675 15 6 -0.0865 -3.0888 -4.3446 16 8 0.7214 -2.1928 -4.4700 17 7 -0.3672 -4.0425 -5.2485 18 6 -1.3486 -4.9257 -4.7970 19 6 -1.9244 -6.0379 -5.4085 20 6 -2.8939 -6.7655 -4.7502 21 6 -3.3026 -6.3984 -3.4808 22 6 -2.7353 -5.2952 -2.8673 23 6 -1.7673 -4.5674 -3.5221 24 6 1.5894 -3.5966 0.3619 25 6 2.4553 -3.5208 1.6211 26 6 2.9967 -4.1967 0.3597 27 1 -0.4850 0.8365 0.0769 28 1 -0.7563 -3.9790 -1.0941 29 1 0.6306 -4.3786 -2.1358 30 1 0.0629 -4.1095 -6.1153 31 1 -1.6107 -6.3308 -6.3994 32 1 -3.3370 -7.6262 -5.2289 33 1 -4.0655 -6.9686 -2.9717 34 1 -3.0521 -5.0052 -1.8764 35 1 0.7472 -4.2885 0.3707 36 1 2.8704 -2.5492 1.8888 37 1 2.1826 -4.1630 2.4587 38 1 3.0804 -5.2835 0.3675 39 1 3.7679 -3.6694 -0.2018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604528607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:47:44 Heat of formation + Delta-G solvation = 14.580179 kcal Electronic energy + Delta-G solvation = -24491.161012 eV Core-core repulsion = 20979.608201 eV Total energy + Delta-G solvation = -3511.552811 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36437 -38.50074 -38.02141 -36.00065 -35.37177 -33.31106 -32.45084 -30.86170 -29.95803 -28.88175 -26.25226 -24.23597 -22.53169 -21.68473 -21.32793 -21.16778 -20.49824 -18.92987 -17.71263 -16.83243 -16.16560 -15.95677 -15.66565 -15.45035 -14.73765 -14.42173 -14.18819 -14.03878 -13.82139 -13.67866 -12.98741 -12.96624 -12.77454 -12.52256 -12.00118 -11.83302 -11.63418 -11.17024 -11.03355 -10.84248 -10.77637 -10.73425 -10.67042 -10.40382 -10.12087 -9.89640 -9.68777 -9.47714 -8.90165 -8.60916 -7.96598 -7.81375 -6.89920 -6.01355 -3.73514 1.23899 1.30889 2.86924 3.18743 3.37199 3.44651 3.50360 3.80292 4.23004 4.33956 4.38272 4.61349 4.83872 4.86234 4.96006 4.99271 5.27169 5.35430 5.40978 5.43408 5.56166 5.62981 5.73651 5.82472 5.85472 5.90937 6.09666 6.14893 6.25569 6.26460 6.36447 6.40648 6.48557 6.51981 6.73208 6.80341 6.97476 6.99401 7.12904 7.70859 8.36350 8.39547 9.16837 9.28884 9.78866 10.43163 11.08114 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.018433 B = 0.004850 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.669534 B = 5772.133178 C = 6430.420796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.280 1.280 7 C -0.346 4.346 8 H 0.075 0.925 9 N -0.431 5.431 10 C 0.476 3.524 11 O -0.504 6.504 12 C -0.109 4.109 13 C -0.061 4.061 14 H 0.130 0.870 15 C 0.528 3.472 16 O -0.454 6.454 17 N -0.673 5.673 18 C 0.151 3.849 19 C -0.149 4.149 20 C -0.090 4.090 21 C -0.148 4.148 22 C -0.063 4.063 23 C -0.132 4.132 24 C 0.077 3.923 25 C -0.174 4.174 26 C -0.210 4.210 27 H 0.263 0.737 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.406 0.594 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 -15.431 -5.701 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.135 4.135 3 Si 0.739 3.261 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.206 1.206 7 C -0.473 4.473 8 H 0.092 0.908 9 N -0.153 5.153 10 C 0.263 3.737 11 O -0.379 6.379 12 C -0.150 4.150 13 C -0.083 4.083 14 H 0.148 0.852 15 C 0.314 3.686 16 O -0.322 6.322 17 N -0.317 5.317 18 C 0.053 3.947 19 C -0.170 4.170 20 C -0.108 4.108 21 C -0.167 4.167 22 C -0.081 4.081 23 C -0.135 4.135 24 C -0.030 4.030 25 C -0.211 4.211 26 C -0.250 4.250 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.244 0.756 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.584 -14.084 -6.077 16.324 hybrid contribution 0.553 0.551 -0.351 0.856 sum -5.031 -13.533 -6.428 15.804 Atomic orbital electron populations 1.69812 1.06508 1.27314 1.43143 1.25144 0.94770 0.99149 0.94414 0.86301 0.79341 0.82156 0.78340 1.20016 1.21284 1.20553 1.18753 0.94854 0.84144 1.49513 0.90783 1.42716 1.44215 1.05937 1.22479 1.19564 0.83624 0.88850 0.81690 1.90610 1.61389 1.32915 1.53000 1.21424 0.98678 0.99597 0.95280 1.20442 0.96394 0.96793 0.94672 0.85246 1.20605 0.83006 0.80392 0.84566 1.90907 1.32865 1.30092 1.78382 1.43990 1.39013 1.28672 1.20058 1.18217 0.90585 0.91794 0.94081 1.20310 1.00271 0.95557 1.00860 1.20803 0.96214 0.98939 0.94892 1.21013 1.01782 0.98076 0.95821 1.20343 0.94205 0.93883 0.99707 1.20012 0.99907 0.98783 0.94811 1.21668 0.92254 0.91352 0.97708 1.23053 1.04612 1.02545 0.90936 1.23321 1.00089 0.98594 1.02948 0.92730 0.89459 0.90654 0.75612 0.86023 0.85646 0.85617 0.85310 0.88135 0.87527 0.89874 0.89922 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.03 11.64 55.50 0.65 -24.38 16 2 C 0.08 2.18 4.35 -17.47 -0.08 2.10 16 3 Si 0.91 22.83 29.60 -169.99 -5.03 17.80 16 4 H -0.27 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.35 -9.70 8.00 -14.93 -0.12 -9.82 16 8 H 0.07 2.02 7.18 -52.48 -0.38 1.65 16 9 N -0.43 -11.01 2.85 -107.73 -0.31 -11.32 16 10 C 0.48 12.23 6.67 -10.99 -0.07 12.15 16 11 O -0.50 -15.06 11.58 -15.56 -0.18 -15.24 16 12 C -0.11 -2.10 3.83 -27.88 -0.11 -2.20 16 13 C -0.06 -1.11 2.59 -92.37 -0.24 -1.35 16 14 H 0.13 2.58 7.90 -51.93 -0.41 2.17 16 15 C 0.53 10.21 7.83 -10.83 -0.08 10.12 16 16 O -0.45 -11.02 15.97 -15.56 -0.25 -11.27 16 17 N -0.67 -9.73 5.88 -9.70 -0.06 -9.79 16 18 C 0.15 2.00 7.11 -83.69 -0.60 1.40 16 19 C -0.15 -1.53 10.07 -39.27 -0.40 -1.93 16 20 C -0.09 -0.82 10.02 -39.66 -0.40 -1.21 16 21 C -0.15 -1.42 10.07 -39.50 -0.40 -1.82 16 22 C -0.06 -0.74 10.03 -39.73 -0.40 -1.14 16 23 C -0.13 -1.88 5.67 -104.37 -0.59 -2.47 16 24 C 0.08 1.55 5.88 -67.93 -0.40 1.16 16 25 C -0.17 -3.18 9.79 -26.73 -0.26 -3.45 16 26 C -0.21 -3.71 10.36 -26.73 -0.28 -3.99 16 27 H 0.26 7.60 8.32 -40.82 -0.34 7.26 16 28 H 0.09 1.50 7.56 -51.93 -0.39 1.10 16 29 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 30 H 0.41 4.77 8.96 -40.82 -0.37 4.41 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.10 1.78 6.95 -51.93 -0.36 1.42 16 36 H 0.11 2.18 6.68 -51.93 -0.35 1.83 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 329.42 15.07 4.96 4.96 Total: -1.00 -35.86 329.42 -9.40 -45.26 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.77 Total: 6.41 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -4.41 Total: -2.44 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.28 Total: -45.49 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.43 Total: -26.50 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.86 -9.40 -45.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604528607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.839 kcal (2) G-P(sol) polarization free energy of solvation -35.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds