Wall clock time and date at job start Fri Apr 10 2020 20:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86800 * 119.99838 * 2 1 4 4 H 1.48509 * 109.46872 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47436 * 299.99759 * 3 2 1 6 6 H 1.48498 * 109.47495 * 60.00372 * 3 2 1 7 7 C 1.39911 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00538 * 193.66465 * 7 2 1 9 9 C 1.41176 * 119.99994 * 13.67039 * 7 2 1 10 10 C 1.40848 * 120.17505 * 208.04902 * 9 7 2 11 11 C 1.36407 * 119.82315 * 180.02562 * 10 9 7 12 12 C 1.39402 * 120.17574 * 359.97359 * 11 10 9 13 13 N 1.39595 * 119.82631 * 180.02562 * 12 11 10 14 14 C 1.33801 * 124.17970 * 353.84091 * 13 12 11 15 15 O 1.21531 * 123.76663 * 0.03644 * 14 13 12 16 16 N 1.34525 * 112.45927 * 180.02562 * 14 13 12 17 17 C 1.47314 * 106.61930 * 359.97438 * 16 14 13 18 18 H 1.09003 * 110.60042 * 241.32347 * 17 16 14 19 19 C 1.53001 * 110.59477 * 118.52867 * 17 16 14 20 20 C 1.53003 * 109.47008 * 66.45837 * 19 17 16 21 21 C 1.53002 * 117.49458 * 243.74212 * 20 19 17 22 22 C 1.52998 * 117.49624 * 175.08633 * 20 19 17 23 23 C 1.34766 * 124.17994 * 173.87872 * 13 12 11 24 24 O 1.21231 * 127.15818 * 0.02562 * 23 13 12 25 25 C 1.39399 * 120.34954 * 0.30098 * 12 11 10 26 26 C 1.36412 * 120.17453 * 359.44123 * 25 12 11 27 27 H 0.96998 * 119.99981 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.08840 * 359.97438 * 10 9 7 29 29 H 1.07999 * 119.91281 * 179.97438 * 11 10 9 30 30 H 0.97000 * 126.68920 * 179.97438 * 16 14 13 31 31 H 1.08996 * 109.47401 * 306.45466 * 19 17 16 32 32 H 1.09001 * 109.46827 * 186.45187 * 19 17 16 33 33 H 1.08995 * 115.55505 * 29.40878 * 20 19 17 34 34 H 1.08999 * 117.49819 * 0.02562 * 21 20 19 35 35 H 1.08998 * 117.49926 * 145.01581 * 21 20 19 36 36 H 1.09004 * 117.49967 * 214.97489 * 22 20 19 37 37 H 1.08999 * 117.50197 * 359.97438 * 22 20 19 38 38 H 1.07995 * 119.91891 * 179.72373 * 25 12 11 39 39 H 1.07999 * 120.09402 * 180.27921 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7026 1.3464 -0.0006 5 1 1.8839 2.3965 -1.2124 6 1 1.8839 2.3965 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0653 -1.2248 0.2215 9 6 1.3323 -2.4171 -0.2879 10 6 1.7937 -3.6338 0.2511 11 6 1.1355 -4.7944 -0.0327 12 6 0.0087 -4.7783 -0.8533 13 7 -0.6596 -5.9702 -1.1385 14 6 -0.2270 -7.1814 -0.7695 15 8 0.7975 -7.3711 -0.1439 16 7 -1.0530 -8.1656 -1.1681 17 6 -2.1641 -7.5180 -1.8866 18 1 -3.1119 -7.7165 -1.3861 19 6 -2.2147 -7.9931 -3.3401 20 6 -2.5785 -9.4788 -3.3786 21 6 -1.5363 -10.4468 -3.9422 22 6 -2.7930 -10.1182 -4.7519 23 6 -1.8198 -6.0432 -1.8202 24 8 -2.4558 -5.1213 -2.2842 25 6 -0.4508 -3.5790 -1.3952 26 6 0.1933 -2.4093 -1.1166 27 1 -0.4850 0.8400 0.0004 28 1 2.6667 -3.6480 0.8867 29 1 1.4883 -5.7283 0.3795 30 1 -0.9391 -9.1162 -1.0127 31 1 -1.2399 -7.8456 -3.8048 32 1 -2.9666 -7.4208 -3.8834 33 1 -3.2006 -9.8320 -2.5562 34 1 -0.5914 -10.0253 -4.2851 35 1 -1.4730 -11.4369 -3.4908 36 1 -3.5561 -10.8923 -4.8330 37 1 -2.6754 -9.4804 -5.6279 38 1 -1.3219 -3.5752 -2.0337 39 1 -0.1665 -1.4803 -1.5335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711323639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:47:42 Heat of formation + Delta-G solvation = 9.536846 kcal Electronic energy + Delta-G solvation = -23710.530500 eV Core-core repulsion = 20198.758994 eV Total energy + Delta-G solvation = -3511.771506 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.34607 -38.38049 -38.16911 -37.38522 -35.82445 -34.67910 -33.10013 -30.42812 -29.64694 -29.14974 -25.94127 -24.75195 -22.90559 -22.68892 -21.79324 -20.96661 -20.34373 -19.74661 -17.86232 -17.34791 -16.82076 -16.44533 -15.95936 -15.52119 -15.21949 -15.16588 -14.73884 -14.16352 -13.87534 -13.77438 -13.40108 -13.13348 -12.72167 -12.51812 -12.18776 -11.94755 -11.83605 -11.72646 -11.65938 -11.26565 -11.14199 -10.79325 -10.72589 -10.43502 -10.30811 -10.12019 -9.89997 -9.48549 -9.41511 -9.15196 -8.90928 -7.58821 -7.11654 -6.78057 -4.37315 1.81817 2.54289 2.59644 3.03695 3.06222 3.08298 3.12265 3.29488 3.44552 3.60822 3.91206 4.06497 4.29433 4.51925 4.60614 4.62613 4.78999 4.84637 5.16503 5.34098 5.44735 5.51123 5.59930 5.62094 5.66176 5.81178 5.93387 6.09970 6.36174 6.46754 6.78632 6.95574 6.98776 7.07683 7.20901 7.53189 7.58718 7.62656 7.90078 8.00966 8.05528 8.24506 8.48827 8.58385 8.83738 8.91852 10.15667 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.031975 B = 0.003299 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.467747 B = 8485.952869 C = 9012.115507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.454 4.454 8 H 0.080 0.920 9 C 0.110 3.890 10 C -0.214 4.214 11 C -0.094 4.094 12 C -0.029 4.029 13 N -0.485 5.485 14 C 0.697 3.303 15 O -0.536 6.536 16 N -0.727 5.727 17 C 0.099 3.901 18 H 0.124 0.876 19 C -0.088 4.088 20 C -0.154 4.154 21 C -0.180 4.180 22 C -0.177 4.177 23 C 0.511 3.489 24 O -0.464 6.464 25 C -0.106 4.106 26 C -0.152 4.152 27 H 0.281 0.719 28 H 0.100 0.900 29 H 0.131 0.869 30 H 0.436 0.564 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.560 -15.531 -6.393 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.107 3.893 10 C -0.234 4.234 11 C -0.113 4.113 12 C -0.118 4.118 13 N -0.221 5.221 14 C 0.399 3.601 15 O -0.410 6.410 16 N -0.392 5.392 17 C -0.011 4.011 18 H 0.142 0.858 19 C -0.127 4.127 20 C -0.172 4.172 21 C -0.217 4.217 22 C -0.214 4.214 23 C 0.298 3.702 24 O -0.335 6.335 25 C -0.125 4.125 26 C -0.172 4.172 27 H 0.092 0.908 28 H 0.118 0.882 29 H 0.149 0.851 30 H 0.279 0.721 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.138 0.862 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.521 -14.857 -6.280 17.398 hybrid contribution 0.251 0.304 0.170 0.429 sum -6.271 -14.553 -6.110 16.984 Atomic orbital electron populations 1.69829 1.07539 1.29284 1.34979 1.25960 0.94832 1.01445 0.92310 0.86206 0.80885 0.80738 0.78584 1.18363 1.19678 1.19932 1.19642 0.96869 0.90729 1.41117 0.90146 1.17793 0.91169 0.92302 0.87997 1.20702 1.03635 0.92655 1.06432 1.20853 0.94037 0.99403 0.96996 1.17270 1.00443 0.81959 1.12125 1.43254 1.22409 1.07425 1.49034 1.15908 0.83419 0.80753 0.80054 1.90861 1.23929 1.83239 1.42980 1.45529 1.24668 1.08953 1.60085 1.22057 0.93117 0.90340 0.95547 0.85821 1.21382 1.03685 0.94392 0.93225 1.22244 1.03561 0.93301 0.98068 1.23096 0.94112 1.00261 1.04205 1.22980 1.00235 1.03445 0.94773 1.20674 0.80551 0.90797 0.78206 1.90707 1.54076 1.43200 1.45473 1.20752 1.00330 0.91114 1.00334 1.20954 0.98927 0.96217 1.01088 0.90760 0.88229 0.85146 0.72054 0.90431 0.88768 0.87351 0.88603 0.88733 0.88707 0.88619 0.86167 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.50 10.95 55.55 0.61 -19.89 16 2 C 0.07 1.82 5.20 -17.34 -0.09 1.73 16 3 Si 0.91 18.61 29.58 -169.99 -5.03 13.58 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.45 -12.04 9.04 -37.84 -0.34 -12.38 16 8 H 0.08 2.04 7.88 -52.49 -0.41 1.63 16 9 C 0.11 2.98 5.55 -106.80 -0.59 2.39 16 10 C -0.21 -5.45 9.74 -39.26 -0.38 -5.83 16 11 C -0.09 -2.28 9.18 -39.81 -0.37 -2.65 16 12 C -0.03 -0.68 6.57 -83.46 -0.55 -1.23 16 13 N -0.49 -9.49 2.81 -64.21 -0.18 -9.67 16 14 C 0.70 12.18 8.53 -88.01 -0.75 11.43 16 15 O -0.54 -10.97 14.62 5.34 0.08 -10.90 16 16 N -0.73 -8.47 6.04 -59.19 -0.36 -8.83 16 17 C 0.10 1.08 3.65 -68.20 -0.25 0.83 16 18 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 19 C -0.09 -0.79 5.26 -26.73 -0.14 -0.93 16 20 C -0.15 -1.05 5.55 -90.62 -0.50 -1.55 16 21 C -0.18 -1.21 10.18 -26.69 -0.27 -1.48 16 22 C -0.18 -1.15 10.25 -26.70 -0.27 -1.42 16 23 C 0.51 8.59 7.51 -10.56 -0.08 8.51 16 24 O -0.46 -8.94 15.02 5.60 0.08 -8.85 16 25 C -0.11 -2.62 9.24 -39.81 -0.37 -2.99 16 26 C -0.15 -4.04 8.61 -39.25 -0.34 -4.38 16 27 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 28 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 29 H 0.13 3.11 5.14 -52.49 -0.27 2.84 16 30 H 0.44 3.79 8.96 -40.82 -0.37 3.42 16 31 H 0.08 0.79 7.88 -51.93 -0.41 0.38 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.11 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.10 0.72 8.03 -51.93 -0.42 0.30 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.12 2.90 5.32 -52.49 -0.28 2.62 16 39 H 0.12 3.36 6.27 -52.49 -0.33 3.03 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -30.79 329.02 -9.71 -40.49 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -4.57 Total: 9.08 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -5.29 Total: -9.97 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.07 Total: -38.39 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.16 Total: -19.75 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.79 -9.71 -40.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711323639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.030 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds