Wall clock time and date at job start Fri Apr 10 2020 20:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00144 * 2 1 4 4 H 1.48496 * 109.47024 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47153 * 300.00163 * 3 2 1 6 6 H 1.48499 * 109.46978 * 60.00139 * 3 2 1 7 7 C 1.37872 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00514 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00099 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47279 * 180.02562 * 9 7 2 11 11 O 1.45193 * 109.46909 * 180.02562 * 10 9 7 12 12 C 1.34733 * 116.99838 * 179.97438 * 11 10 9 13 13 O 1.21492 * 119.99853 * 0.02562 * 12 11 10 14 14 C 1.47588 * 120.00158 * 179.97438 * 12 11 10 15 15 C 1.41540 * 126.52218 * 180.02562 * 14 12 11 16 16 C 1.35351 * 105.50175 * 179.75808 * 15 14 12 17 17 N 1.35052 * 107.23985 * 0.35511 * 16 15 14 18 18 C 1.46500 * 124.88137 * 179.89530 * 17 16 15 19 19 C 1.50706 * 109.46949 * 124.71798 * 18 17 16 20 20 C 1.38231 * 119.99884 * 269.72390 * 19 18 17 21 21 C 1.38232 * 119.99941 * 179.77036 * 20 19 18 22 22 C 1.38241 * 119.99967 * 0.50748 * 21 20 19 23 23 C 1.38238 * 119.99768 * 359.74620 * 22 21 20 24 24 C 1.38234 * 120.00037 * 0.02562 * 23 22 21 25 25 N 1.28470 * 110.24013 * 359.62306 * 17 16 15 26 26 H 0.97000 * 120.00042 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46709 * 60.00149 * 9 7 2 28 28 H 1.08997 * 109.46897 * 300.00537 * 9 7 2 29 29 H 1.08999 * 109.46784 * 59.99709 * 10 9 7 30 30 H 1.09001 * 109.47028 * 300.00011 * 10 9 7 31 31 H 1.07995 * 127.25207 * 0.02562 * 15 14 12 32 32 H 1.08000 * 126.38745 * 180.21034 * 16 15 14 33 33 H 1.09000 * 109.46609 * 4.71977 * 18 17 16 34 34 H 1.09000 * 109.47175 * 244.71772 * 18 17 16 35 35 H 1.07997 * 120.00101 * 0.02562 * 20 19 18 36 36 H 1.08002 * 120.00546 * 180.23234 * 21 20 19 37 37 H 1.08001 * 120.00379 * 179.72801 * 22 21 20 38 38 H 1.08003 * 119.99873 * 179.97438 * 23 22 21 39 39 H 1.07997 * 119.99984 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5192 -4.9195 -0.0011 12 6 2.2530 -6.0494 -0.0018 13 8 3.4663 -5.9859 -0.0013 14 6 1.5830 -7.3645 -0.0018 15 6 2.2141 -8.6314 -0.0019 16 6 1.2079 -9.5367 0.0035 17 7 0.0476 -8.8456 -0.0013 18 6 -1.2872 -9.4494 -0.0001 19 6 -2.0799 -8.9135 1.1642 20 6 -2.0432 -9.5641 2.3833 21 6 -2.7665 -9.0699 3.4526 22 6 -3.5348 -7.9308 3.2999 23 6 -3.5756 -7.2831 2.0793 24 6 -2.8485 -7.7747 1.0113 25 7 0.2826 -7.5826 -0.0014 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5566 -0.8903 28 1 0.6246 -2.5570 0.8896 29 1 2.8719 -3.6043 0.8894 30 1 2.8719 -3.6043 -0.8905 31 1 3.2750 -8.8333 -0.0016 32 1 1.3132 -10.6116 0.0083 33 1 -1.1961 -10.5319 0.0899 34 1 -1.7979 -9.2038 -0.9312 35 1 -1.4462 -10.4563 2.5015 36 1 -2.7350 -9.5761 4.4061 37 1 -4.1034 -7.5471 4.1341 38 1 -4.1761 -6.3934 1.9599 39 1 -2.8807 -7.2690 0.0577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772466607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:14 Heat of formation + Delta-G solvation = 14.466909 kcal Electronic energy + Delta-G solvation = -22727.048179 eV Core-core repulsion = 19215.490457 eV Total energy + Delta-G solvation = -3511.557723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.72359 -39.59235 -39.31982 -35.95049 -34.45892 -33.27006 -31.19096 -31.13527 -30.78489 -30.10594 -27.18173 -25.14090 -23.53368 -22.85400 -21.82235 -21.32346 -20.83060 -19.93074 -17.84421 -17.26078 -16.88427 -16.35501 -16.04325 -15.70403 -15.67160 -15.32830 -14.90292 -14.46258 -14.00732 -13.64902 -13.47602 -13.36822 -13.05681 -12.85284 -12.67793 -12.53582 -12.31000 -11.48314 -11.26758 -11.16960 -10.96630 -10.83813 -10.69926 -10.66155 -10.30475 -9.57411 -9.56108 -9.31747 -9.22711 -9.21552 -9.12763 -9.06852 -8.38886 -6.04778 -4.08672 0.91441 1.19248 1.57819 2.04581 2.38007 3.28102 3.31325 3.38818 3.44739 3.47982 3.61501 4.04847 4.31156 4.43922 4.62438 4.65808 4.73049 4.85599 4.91587 4.98959 5.25962 5.31749 5.36113 5.40172 5.59523 5.67702 5.69306 5.80104 6.16683 6.18135 6.18704 6.25388 6.30799 6.33561 6.62849 6.72754 6.74029 7.03118 7.63364 7.71255 7.82527 7.95203 8.28112 8.38610 8.97230 9.55254 11.06845 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.003326 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.763387 B = 8416.828472 C =10013.433619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.074 3.926 11 O -0.341 6.341 12 C 0.547 3.453 13 O -0.511 6.511 14 C 0.000 4.000 15 C -0.176 4.176 16 C -0.024 4.024 17 N -0.280 5.280 18 C 0.165 3.835 19 C -0.121 4.121 20 C -0.100 4.100 21 C -0.127 4.127 22 C -0.106 4.106 23 C -0.119 4.119 24 C -0.077 4.077 25 N -0.221 5.221 26 H 0.262 0.738 27 H 0.029 0.971 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.164 0.836 32 H 0.183 0.817 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.998 -25.098 2.939 26.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.256 6.256 12 C 0.389 3.611 13 O -0.399 6.399 14 C -0.158 4.158 15 C -0.203 4.203 16 C -0.166 4.166 17 N -0.069 5.069 18 C 0.045 3.955 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.145 4.145 22 C -0.124 4.124 23 C -0.137 4.137 24 C -0.095 4.095 25 N -0.058 5.058 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.181 0.819 32 H 0.200 0.800 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.914 -24.405 2.917 25.822 hybrid contribution 1.318 0.546 0.075 1.429 sum -6.596 -23.859 2.992 24.934 Atomic orbital electron populations 1.69993 1.06082 1.26757 1.50035 1.24982 0.94904 0.99344 0.94960 0.86425 0.80091 0.83214 0.77638 1.19573 1.20875 1.20872 1.21034 0.93227 0.90111 1.51834 0.92175 1.19166 0.94194 0.88931 0.98940 1.23686 0.96433 0.78691 1.01001 1.86671 1.41489 1.15242 1.82182 1.19606 0.84812 0.83764 0.72922 1.90812 1.14362 1.87842 1.46863 1.21013 0.89748 0.92868 1.12177 1.21747 1.00625 0.89818 1.08148 1.22850 0.84877 0.99657 1.09202 1.45745 1.07086 1.03378 1.50702 1.20878 0.78145 0.97628 0.98826 1.19671 0.99823 0.97834 0.94802 1.20994 0.98734 0.99732 0.92387 1.21113 0.97735 0.97025 0.98649 1.21283 0.98327 0.95271 0.97547 1.21258 0.99588 0.99913 0.92981 1.21138 0.94524 0.94120 0.99728 1.73787 1.17876 0.98065 1.16067 0.92845 0.95305 0.95325 0.92215 0.92197 0.81864 0.80019 0.86974 0.87834 0.86142 0.85909 0.85829 0.85396 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 9 C 0.02 0.68 5.35 -27.88 -0.15 0.53 16 10 C 0.07 1.78 5.41 37.16 0.20 1.98 16 11 O -0.34 -7.76 10.23 -40.58 -0.42 -8.18 16 12 C 0.55 11.26 7.97 34.54 0.28 11.54 16 13 O -0.51 -11.16 16.72 -19.26 -0.32 -11.48 16 14 C 0.00 0.00 7.17 -82.78 -0.59 -0.59 16 15 C -0.18 -2.29 10.81 -39.35 -0.43 -2.72 16 16 C -0.02 -0.24 11.40 -17.16 -0.20 -0.43 16 17 N -0.28 -3.18 3.40 -62.51 -0.21 -3.39 16 18 C 0.16 1.23 6.53 -5.19 -0.03 1.20 16 19 C -0.12 -1.14 5.22 -104.62 -0.55 -1.69 16 20 C -0.10 -0.87 9.70 -39.59 -0.38 -1.25 16 21 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 22 C -0.11 -1.00 10.05 -39.58 -0.40 -1.40 16 23 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 24 C -0.08 -0.83 9.70 -39.58 -0.38 -1.21 16 25 N -0.22 -3.55 11.71 33.41 0.39 -3.15 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 32 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.11 0.41 7.98 -51.93 -0.41 -0.01 16 34 H 0.10 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -35.55 351.24 -8.41 -43.97 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -5.03 Total: -2.60 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -3.84 Total: -11.06 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.92 Total: -32.76 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.74 Total: -19.66 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.55 -8.41 -43.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772466607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.436 kcal (2) G-P(sol) polarization free energy of solvation -35.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds