Wall clock time and date at job start Fri Apr 10 2020 20:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00144 * 2 1 4 4 H 1.48496 * 109.47024 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47153 * 300.00163 * 3 2 1 6 6 H 1.48499 * 109.46978 * 60.00139 * 3 2 1 7 7 C 1.37872 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00514 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00099 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47279 * 180.02562 * 9 7 2 11 11 O 1.45193 * 109.46909 * 180.02562 * 10 9 7 12 12 C 1.34733 * 116.99838 * 179.97438 * 11 10 9 13 13 O 1.21492 * 119.99853 * 0.02562 * 12 11 10 14 14 C 1.47588 * 120.00158 * 179.97438 * 12 11 10 15 15 C 1.41540 * 126.52218 * 180.02562 * 14 12 11 16 16 C 1.35351 * 105.50175 * 179.75808 * 15 14 12 17 17 N 1.35052 * 107.23985 * 0.35511 * 16 15 14 18 18 C 1.46500 * 124.88137 * 179.89530 * 17 16 15 19 19 C 1.50706 * 109.46949 * 124.71798 * 18 17 16 20 20 C 1.38231 * 119.99884 * 269.72390 * 19 18 17 21 21 C 1.38232 * 119.99941 * 179.77036 * 20 19 18 22 22 C 1.38241 * 119.99967 * 0.50748 * 21 20 19 23 23 C 1.38238 * 119.99768 * 359.74620 * 22 21 20 24 24 C 1.38234 * 120.00037 * 0.02562 * 23 22 21 25 25 N 1.28470 * 110.24013 * 359.62306 * 17 16 15 26 26 H 0.97000 * 120.00042 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46709 * 60.00149 * 9 7 2 28 28 H 1.08997 * 109.46897 * 300.00537 * 9 7 2 29 29 H 1.08999 * 109.46784 * 59.99709 * 10 9 7 30 30 H 1.09001 * 109.47028 * 300.00011 * 10 9 7 31 31 H 1.07995 * 127.25207 * 0.02562 * 15 14 12 32 32 H 1.08000 * 126.38745 * 180.21034 * 16 15 14 33 33 H 1.09000 * 109.46609 * 4.71977 * 18 17 16 34 34 H 1.09000 * 109.47175 * 244.71772 * 18 17 16 35 35 H 1.07997 * 120.00101 * 0.02562 * 20 19 18 36 36 H 1.08002 * 120.00546 * 180.23234 * 21 20 19 37 37 H 1.08001 * 120.00379 * 179.72801 * 22 21 20 38 38 H 1.08003 * 119.99873 * 179.97438 * 23 22 21 39 39 H 1.07997 * 119.99984 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5192 -4.9195 -0.0011 12 6 2.2530 -6.0494 -0.0018 13 8 3.4663 -5.9859 -0.0013 14 6 1.5830 -7.3645 -0.0018 15 6 2.2141 -8.6314 -0.0019 16 6 1.2079 -9.5367 0.0035 17 7 0.0476 -8.8456 -0.0013 18 6 -1.2872 -9.4494 -0.0001 19 6 -2.0799 -8.9135 1.1642 20 6 -2.0432 -9.5641 2.3833 21 6 -2.7665 -9.0699 3.4526 22 6 -3.5348 -7.9308 3.2999 23 6 -3.5756 -7.2831 2.0793 24 6 -2.8485 -7.7747 1.0113 25 7 0.2826 -7.5826 -0.0014 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5566 -0.8903 28 1 0.6246 -2.5570 0.8896 29 1 2.8719 -3.6043 0.8894 30 1 2.8719 -3.6043 -0.8905 31 1 3.2750 -8.8333 -0.0016 32 1 1.3132 -10.6116 0.0083 33 1 -1.1961 -10.5319 0.0899 34 1 -1.7979 -9.2038 -0.9312 35 1 -1.4462 -10.4563 2.5015 36 1 -2.7350 -9.5761 4.4061 37 1 -4.1034 -7.5471 4.1341 38 1 -4.1761 -6.3934 1.9599 39 1 -2.8807 -7.2690 0.0577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772466607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:14 Heat of formation + Delta-G solvation = -6.351703 kcal Electronic energy + Delta-G solvation = -22727.950942 eV Core-core repulsion = 19215.490457 eV Total energy + Delta-G solvation = -3512.460486 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.70330 -41.20062 -40.09119 -37.70801 -35.48352 -35.24947 -32.53276 -31.89061 -31.80440 -31.66984 -28.22611 -26.99109 -24.90755 -23.57778 -22.98853 -22.59657 -22.18928 -21.25423 -19.03138 -18.61099 -18.07436 -17.86017 -17.61490 -17.14754 -16.83569 -16.48748 -16.06467 -15.77417 -15.02887 -14.83898 -14.64671 -14.43669 -14.33108 -14.12635 -13.95433 -13.54079 -13.29528 -13.16031 -13.04437 -12.63733 -12.61099 -12.18506 -12.04708 -11.95051 -11.84983 -11.60574 -11.52343 -11.40868 -10.63874 -10.33305 -10.12389 -9.85591 -9.83303 -8.28163 -6.42233 0.17703 0.27385 0.47009 1.16846 1.38011 1.41530 1.43845 1.56033 1.93018 2.08158 2.39801 2.87691 3.05863 3.28038 3.63992 3.79655 3.95578 4.04835 4.09852 4.18206 4.21123 4.24429 4.33650 4.41995 4.57941 4.64124 4.68194 4.70700 4.72486 5.01047 5.10343 5.16414 5.28911 5.41935 5.45570 5.48598 5.54740 5.59080 5.70560 5.87036 6.03763 6.05100 6.56049 6.71244 6.95209 7.27635 8.85086 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.003326 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.763387 B = 8416.828472 C =10013.433619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.550 4.550 8 H 0.067 0.933 9 C 0.033 3.967 10 C 0.089 3.911 11 O -0.358 6.358 12 C 0.543 3.457 13 O -0.532 6.532 14 C -0.041 4.041 15 C -0.191 4.191 16 C 0.012 3.988 17 N -0.268 5.268 18 C 0.156 3.844 19 C -0.128 4.128 20 C -0.100 4.100 21 C -0.135 4.135 22 C -0.118 4.118 23 C -0.144 4.144 24 C -0.102 4.102 25 N -0.258 5.258 26 H 0.268 0.732 27 H 0.004 0.996 28 H 0.002 0.998 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.175 0.825 32 H 0.245 0.755 33 H 0.167 0.833 34 H 0.112 0.888 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.125 0.875 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.166 -27.765 3.326 28.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.587 4.587 8 H 0.085 0.915 9 C -0.004 4.004 10 C 0.016 3.984 11 O -0.273 6.273 12 C 0.387 3.613 13 O -0.421 6.421 14 C -0.196 4.196 15 C -0.218 4.218 16 C -0.130 4.130 17 N -0.058 5.058 18 C 0.039 3.961 19 C -0.129 4.129 20 C -0.118 4.118 21 C -0.152 4.152 22 C -0.136 4.136 23 C -0.162 4.162 24 C -0.121 4.121 25 N -0.097 5.097 26 H 0.077 0.923 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.192 0.808 32 H 0.261 0.739 33 H 0.184 0.816 34 H 0.130 0.870 35 H 0.171 0.829 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.143 0.857 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.086 -27.087 3.301 28.193 hybrid contribution 0.924 1.214 -0.025 1.526 sum -6.162 -25.873 3.276 26.797 Atomic orbital electron populations 1.70122 1.07946 1.28254 1.50382 1.26020 0.95871 1.03571 0.93935 0.85210 0.78889 0.77719 0.78072 1.18475 1.19927 1.19938 1.21394 0.93763 0.90999 1.52566 0.91462 1.18968 0.94287 0.90742 0.96429 1.23257 0.95174 0.78723 1.01243 1.86661 1.42070 1.15658 1.82908 1.20262 0.84876 0.84206 0.71941 1.90770 1.15081 1.88141 1.48059 1.20840 0.90982 0.92091 1.15725 1.22042 1.02149 0.88552 1.09065 1.23684 0.82726 1.01622 1.04928 1.46172 1.09077 1.02187 1.48323 1.21393 0.76213 1.00100 0.98402 1.19902 0.99589 0.97273 0.96110 1.21404 0.98373 1.00443 0.91620 1.21504 0.97112 0.96658 0.99957 1.21546 0.98852 0.95793 0.97449 1.21427 1.00414 1.00512 0.93886 1.21266 0.95919 0.95418 0.99473 1.73719 1.17517 1.01011 1.17459 0.92310 0.97770 0.97913 0.91933 0.91803 0.80802 0.73935 0.81565 0.87022 0.82873 0.83555 0.84466 0.85703 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.98 44.97 29.54 68.60 2.03 47.00 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.55 -32.66 9.11 25.60 0.23 -32.43 16 8 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 9 C 0.03 1.91 5.35 29.85 0.16 2.07 16 10 C 0.09 4.46 5.41 71.98 0.39 4.84 16 11 O -0.36 -17.19 10.23 -56.43 -0.58 -17.77 16 12 C 0.54 23.24 7.97 70.29 0.56 23.80 16 13 O -0.53 -23.90 16.72 19.86 0.33 -23.57 16 14 C -0.04 -1.41 7.17 42.42 0.30 -1.11 16 15 C -0.19 -4.56 10.81 22.42 0.24 -4.32 16 16 C 0.01 0.18 11.40 83.53 0.95 1.13 16 17 N -0.27 -5.30 3.40 -351.67 -1.20 -6.50 16 18 C 0.16 1.78 6.53 85.63 0.56 2.34 16 19 C -0.13 -2.19 5.22 -19.86 -0.10 -2.30 16 20 C -0.10 -1.43 9.70 22.27 0.22 -1.22 16 21 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 22 C -0.12 -2.22 10.05 22.27 0.22 -1.99 16 23 C -0.14 -3.21 10.05 22.27 0.22 -2.99 16 24 C -0.10 -2.28 9.70 22.27 0.22 -2.07 16 25 N -0.26 -8.21 11.71 -48.22 -0.56 -8.77 16 26 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 27 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 30 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.24 0.46 8.06 -2.91 -0.02 0.44 16 33 H 0.17 0.12 7.98 -2.39 -0.02 0.10 16 34 H 0.11 1.14 8.09 -2.39 -0.02 1.13 16 35 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.12 2.63 8.06 -2.91 -0.02 2.61 16 39 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -82.05 351.24 6.22 -75.83 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 1.05 Total: 6.41 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 4.86 Total: -15.37 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -1.47 Total: -72.53 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -0.25 Total: -41.34 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -82.05 6.22 -75.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772466607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.483 kcal (2) G-P(sol) polarization free energy of solvation -82.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds