Wall clock time and date at job start Fri Apr 10 2020 20:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86796 * 120.00419 * 2 1 4 4 H 1.48505 * 109.47063 * 240.00084 * 3 2 1 5 5 H 1.48499 * 109.47184 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47379 * 120.00005 * 3 2 1 7 7 C 1.39943 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00443 * 197.88331 * 7 2 1 9 9 C 1.41440 * 119.99523 * 17.88261 * 7 2 1 10 10 C 1.40793 * 120.17401 * 204.44279 * 9 7 2 11 11 C 1.37716 * 120.04846 * 180.02562 * 10 9 7 12 12 C 1.38358 * 120.42040 * 359.74901 * 11 10 9 13 13 C 1.39923 * 120.35419 * 0.51145 * 12 11 10 14 14 C 1.47766 * 120.03595 * 179.76794 * 13 12 11 15 15 O 1.21461 * 120.00751 * 179.72135 * 14 13 12 16 16 O 1.34711 * 119.99314 * 359.72261 * 14 13 12 17 17 C 1.45199 * 116.99729 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47397 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47342 * 180.02562 * 18 17 16 20 20 N 1.46506 * 109.47030 * 180.02562 * 19 18 17 21 21 C 1.36876 * 126.39929 * 89.99741 * 20 19 18 22 22 C 1.34668 * 106.81486 * 180.02562 * 21 20 19 23 23 N 1.34125 * 108.02564 * 359.97438 * 22 21 20 24 24 C 1.30508 * 109.24999 * 359.72654 * 23 22 21 25 25 C 1.39092 * 119.93456 * 359.48627 * 13 12 11 26 26 H 0.97001 * 119.99718 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.97139 * 0.02562 * 10 9 7 28 28 H 1.08003 * 119.78865 * 180.02562 * 11 10 9 29 29 H 1.08003 * 119.82332 * 180.27895 * 12 11 10 30 30 H 1.08998 * 109.47100 * 59.99723 * 17 16 14 31 31 H 1.09002 * 109.47325 * 299.99630 * 17 16 14 32 32 H 1.08998 * 109.47205 * 59.99807 * 18 17 16 33 33 H 1.09001 * 109.47091 * 299.99916 * 18 17 16 34 34 H 1.09005 * 109.46876 * 299.99166 * 19 18 17 35 35 H 1.08998 * 109.47263 * 59.99677 * 19 18 17 36 36 H 1.08005 * 126.59143 * 359.95965 * 21 20 19 37 37 H 1.08001 * 125.98658 * 180.02562 * 22 21 20 38 38 H 1.08000 * 125.64452 * 180.29592 * 24 23 22 39 39 H 1.08004 * 120.20254 * 180.22730 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6962 -1.2126 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0488 -1.2345 0.2877 9 6 1.3519 -2.4074 -0.3751 10 6 1.8261 -3.6500 0.0867 11 6 1.1857 -4.8124 -0.2811 12 6 0.0715 -4.7693 -1.1003 13 6 -0.4112 -3.5443 -1.5736 14 6 -1.5986 -3.5069 -2.4523 15 8 -2.0203 -2.4428 -2.8587 16 8 -2.2135 -4.6531 -2.8027 17 6 -3.3735 -4.5408 -3.6687 18 6 -3.9324 -5.9358 -3.9561 19 6 -5.1544 -5.8174 -4.8692 20 7 -5.6899 -7.1532 -5.1439 21 6 -6.6395 -7.8138 -4.4123 22 6 -6.8354 -9.0036 -5.0120 23 7 -6.0279 -9.0674 -6.0810 24 6 -5.3432 -7.9599 -6.1698 25 6 0.2242 -2.3612 -1.2113 26 1 -0.4850 0.8401 -0.0004 27 1 2.6927 -3.6916 0.7298 28 1 1.5528 -5.7633 0.0759 29 1 -0.4260 -5.6865 -1.3791 30 1 -3.0827 -4.0661 -4.6058 31 1 -4.1368 -3.9374 -3.1773 32 1 -4.2231 -6.4109 -3.0192 33 1 -3.1690 -6.5388 -4.4478 34 1 -5.9180 -5.2143 -4.3779 35 1 -4.8633 -5.3425 -5.8061 36 1 -7.1354 -7.4511 -3.5240 37 1 -7.5229 -9.7714 -4.6893 38 1 -4.6174 -7.7284 -6.9353 39 1 -0.1470 -1.4129 -1.5711 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783016708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:22 Heat of formation + Delta-G solvation = -13.343342 kcal Electronic energy + Delta-G solvation = -22388.164960 eV Core-core repulsion = 18875.401294 eV Total energy + Delta-G solvation = -3512.763666 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.24751 -39.89601 -37.53222 -36.34721 -35.21579 -33.82217 -31.77691 -30.33957 -29.64014 -29.56937 -26.49345 -25.39636 -23.37820 -22.10046 -21.56461 -21.09575 -21.05532 -19.89851 -17.99040 -17.66663 -16.49624 -16.44566 -16.04130 -15.43835 -15.06805 -14.98182 -14.72010 -14.24206 -14.11117 -13.68858 -13.45230 -13.31273 -12.91184 -12.84076 -12.71843 -12.54994 -11.79155 -11.62917 -11.52107 -11.24072 -11.16829 -10.83962 -10.59520 -10.35809 -10.30383 -10.21225 -9.92800 -9.80583 -9.56410 -9.29902 -8.75646 -7.82501 -7.63215 -6.89769 -4.50647 1.80100 1.88428 2.41616 2.72252 2.96628 3.01732 3.03186 3.09153 3.12340 3.50335 3.84607 4.21235 4.49616 4.50332 4.53679 4.56644 4.73335 4.85743 4.97797 5.21381 5.22323 5.43221 5.46885 5.54866 5.59906 5.79900 6.01662 6.06303 6.32554 6.49729 6.55071 6.81841 6.86684 6.90112 6.91939 7.09935 7.23347 7.60334 7.67605 7.83481 7.84513 8.02863 8.36834 8.43410 8.69711 8.71703 10.05536 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.030449 B = 0.002445 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.353487 B =11450.690025 C =12104.313484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.201 4.201 11 C -0.103 4.103 12 C -0.195 4.195 13 C -0.116 4.116 14 C 0.513 3.487 15 O -0.517 6.517 16 O -0.355 6.355 17 C 0.069 3.931 18 C -0.135 4.135 19 C 0.108 3.892 20 N -0.457 5.457 21 C -0.055 4.055 22 C -0.033 4.033 23 N -0.498 5.498 24 C 0.182 3.818 25 C -0.090 4.090 26 H 0.286 0.714 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.174 0.826 37 H 0.168 0.832 38 H 0.204 0.796 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 -8.107 -7.153 14.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.093 3.907 10 C -0.220 4.220 11 C -0.122 4.122 12 C -0.214 4.214 13 C -0.117 4.117 14 C 0.361 3.639 15 O -0.407 6.407 16 O -0.273 6.273 17 C -0.006 4.006 18 C -0.173 4.173 19 C -0.015 4.015 20 N -0.140 5.140 21 C -0.188 4.188 22 C -0.180 4.180 23 N -0.216 5.216 24 C -0.101 4.101 25 C -0.109 4.109 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.191 0.809 37 H 0.186 0.814 38 H 0.221 0.779 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.756 -8.154 -7.786 14.910 hybrid contribution 0.118 1.544 0.630 1.672 sum -9.638 -6.610 -7.156 13.704 Atomic orbital electron populations 1.69767 1.07634 1.29968 1.33744 1.25975 0.94792 1.01647 0.92192 0.86295 0.80103 0.79912 0.80070 1.18672 1.20212 1.18872 1.19550 0.98294 0.90923 1.40038 0.89908 1.17545 0.91136 0.92630 0.89424 1.21197 1.03207 0.92685 1.04953 1.20519 0.96067 0.96965 0.98604 1.20552 1.00194 0.95270 1.05427 1.18815 0.94914 0.95947 1.02021 1.21901 0.83017 0.80743 0.78261 1.90764 1.65156 1.31151 1.53605 1.86591 1.41756 1.36375 1.62544 1.22673 0.87161 0.96467 0.94310 1.21871 0.96981 0.97401 1.01066 1.21764 0.96747 0.81350 1.01639 1.45564 1.30953 1.15361 1.22096 1.22790 0.98369 0.96043 1.01579 1.22314 1.02914 0.97507 0.95310 1.70302 1.09485 1.21486 1.20313 1.25053 1.03049 0.87596 0.94359 1.21658 0.96578 0.95980 0.96713 0.90326 0.88279 0.88481 0.87928 0.91181 0.91190 0.89880 0.89826 0.88470 0.88224 0.80898 0.81423 0.77927 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.15 10.96 55.55 0.61 -19.54 16 2 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.68 9.05 -37.73 -0.34 -12.02 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 9 C 0.10 2.44 5.57 -106.87 -0.60 1.85 16 10 C -0.20 -4.63 9.78 -38.81 -0.38 -5.01 16 11 C -0.10 -2.18 10.01 -39.73 -0.40 -2.58 16 12 C -0.19 -4.18 9.62 -38.91 -0.37 -4.55 16 13 C -0.12 -2.71 5.87 -105.05 -0.62 -3.32 16 14 C 0.51 11.01 7.90 34.63 0.27 11.28 16 15 O -0.52 -12.03 16.12 -19.24 -0.31 -12.34 16 16 O -0.36 -6.18 9.46 -40.52 -0.38 -6.56 16 17 C 0.07 0.85 5.47 37.16 0.20 1.06 16 18 C -0.13 -1.22 5.92 -26.73 -0.16 -1.38 16 19 C 0.11 0.72 6.15 -4.04 -0.02 0.70 16 20 N -0.46 -3.95 2.75 -118.57 -0.33 -4.28 16 21 C -0.05 -0.48 11.58 -16.56 -0.19 -0.68 16 22 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 23 N -0.50 -6.01 11.25 -14.66 -0.17 -6.18 16 24 C 0.18 1.75 12.56 -90.37 -1.14 0.62 16 25 C -0.09 -2.32 8.24 -38.42 -0.32 -2.64 16 26 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 27 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 28 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 29 H 0.10 1.97 7.59 -52.48 -0.40 1.57 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.17 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.20 1.31 8.06 -52.49 -0.42 0.88 16 39 H 0.14 3.73 5.74 -52.48 -0.30 3.43 16 LS Contribution 344.85 15.07 5.20 5.20 Total: -1.00 -30.82 344.85 -9.66 -40.49 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.90 Total: 5.59 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -4.36 Total: -15.52 kcal Atomic # 7 Polarization: -30.12 SS G_CDS: 0.12 Total: -30.00 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.69 Total: -18.90 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.82 -9.66 -40.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783016708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.145 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds