Wall clock time and date at job start Fri Apr 10 2020 20:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86796 * 120.00419 * 2 1 4 4 H 1.48505 * 109.47063 * 240.00084 * 3 2 1 5 5 H 1.48499 * 109.47184 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47379 * 120.00005 * 3 2 1 7 7 C 1.39943 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00443 * 197.88331 * 7 2 1 9 9 C 1.41440 * 119.99523 * 17.88261 * 7 2 1 10 10 C 1.40793 * 120.17401 * 204.44279 * 9 7 2 11 11 C 1.37716 * 120.04846 * 180.02562 * 10 9 7 12 12 C 1.38358 * 120.42040 * 359.74901 * 11 10 9 13 13 C 1.39923 * 120.35419 * 0.51145 * 12 11 10 14 14 C 1.47766 * 120.03595 * 179.76794 * 13 12 11 15 15 O 1.21461 * 120.00751 * 179.72135 * 14 13 12 16 16 O 1.34711 * 119.99314 * 359.72261 * 14 13 12 17 17 C 1.45199 * 116.99729 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47397 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47342 * 180.02562 * 18 17 16 20 20 N 1.46506 * 109.47030 * 180.02562 * 19 18 17 21 21 C 1.36876 * 126.39929 * 89.99741 * 20 19 18 22 22 C 1.34668 * 106.81486 * 180.02562 * 21 20 19 23 23 N 1.34125 * 108.02564 * 359.97438 * 22 21 20 24 24 C 1.30508 * 109.24999 * 359.72654 * 23 22 21 25 25 C 1.39092 * 119.93456 * 359.48627 * 13 12 11 26 26 H 0.97001 * 119.99718 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.97139 * 0.02562 * 10 9 7 28 28 H 1.08003 * 119.78865 * 180.02562 * 11 10 9 29 29 H 1.08003 * 119.82332 * 180.27895 * 12 11 10 30 30 H 1.08998 * 109.47100 * 59.99723 * 17 16 14 31 31 H 1.09002 * 109.47325 * 299.99630 * 17 16 14 32 32 H 1.08998 * 109.47205 * 59.99807 * 18 17 16 33 33 H 1.09001 * 109.47091 * 299.99916 * 18 17 16 34 34 H 1.09005 * 109.46876 * 299.99166 * 19 18 17 35 35 H 1.08998 * 109.47263 * 59.99677 * 19 18 17 36 36 H 1.08005 * 126.59143 * 359.95965 * 21 20 19 37 37 H 1.08001 * 125.98658 * 180.02562 * 22 21 20 38 38 H 1.08000 * 125.64452 * 180.29592 * 24 23 22 39 39 H 1.08004 * 120.20254 * 180.22730 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6962 -1.2126 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0488 -1.2345 0.2877 9 6 1.3519 -2.4074 -0.3751 10 6 1.8261 -3.6500 0.0867 11 6 1.1857 -4.8124 -0.2811 12 6 0.0715 -4.7693 -1.1003 13 6 -0.4112 -3.5443 -1.5736 14 6 -1.5986 -3.5069 -2.4523 15 8 -2.0203 -2.4428 -2.8587 16 8 -2.2135 -4.6531 -2.8027 17 6 -3.3735 -4.5408 -3.6687 18 6 -3.9324 -5.9358 -3.9561 19 6 -5.1544 -5.8174 -4.8692 20 7 -5.6899 -7.1532 -5.1439 21 6 -6.6395 -7.8138 -4.4123 22 6 -6.8354 -9.0036 -5.0120 23 7 -6.0279 -9.0674 -6.0810 24 6 -5.3432 -7.9599 -6.1698 25 6 0.2242 -2.3612 -1.2113 26 1 -0.4850 0.8401 -0.0004 27 1 2.6927 -3.6916 0.7298 28 1 1.5528 -5.7633 0.0759 29 1 -0.4260 -5.6865 -1.3791 30 1 -3.0827 -4.0661 -4.6058 31 1 -4.1368 -3.9374 -3.1773 32 1 -4.2231 -6.4109 -3.0192 33 1 -3.1690 -6.5388 -4.4478 34 1 -5.9180 -5.2143 -4.3779 35 1 -4.8633 -5.3425 -5.8061 36 1 -7.1354 -7.4511 -3.5240 37 1 -7.5229 -9.7714 -4.6893 38 1 -4.6174 -7.7284 -6.9353 39 1 -0.1470 -1.4129 -1.5711 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783016708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:22 Heat of formation + Delta-G solvation = -27.582269 kcal Electronic energy + Delta-G solvation = -22388.782406 eV Core-core repulsion = 18875.401294 eV Total energy + Delta-G solvation = -3513.381112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.92453 -41.46577 -39.24009 -37.72336 -36.16534 -35.62080 -32.77225 -31.98376 -31.36663 -30.32236 -27.58091 -27.06141 -24.84184 -23.09296 -22.83840 -22.25671 -21.82629 -21.45567 -19.66218 -18.57064 -17.92545 -17.71155 -17.65356 -16.70343 -16.47609 -16.13220 -15.94862 -15.30559 -15.13731 -14.98298 -14.79296 -14.41467 -14.27019 -13.95888 -13.87470 -13.65898 -13.49779 -13.00019 -12.83680 -12.63985 -12.57922 -12.35566 -12.23321 -12.05569 -11.57106 -11.56025 -11.32941 -11.09073 -10.94704 -10.61366 -9.63311 -9.46072 -9.44256 -8.70087 -6.40957 0.11451 0.95829 1.10641 1.37583 1.46510 1.50756 1.55468 1.78739 2.01273 2.18492 2.23959 2.70877 3.61156 3.64191 3.67941 3.80071 3.90497 4.04252 4.10884 4.14097 4.29920 4.40541 4.44195 4.59553 4.61497 4.70429 4.81152 4.85534 4.96292 5.04085 5.11922 5.26707 5.30160 5.35339 5.43654 5.79973 5.83486 5.88131 5.99749 6.21713 6.28001 6.51566 6.79428 6.85293 6.87497 7.15076 8.27287 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.030449 B = 0.002445 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.353487 B =11450.690025 C =12104.313484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.031 3.969 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.494 4.494 8 H 0.087 0.913 9 C 0.065 3.935 10 C -0.204 4.204 11 C -0.100 4.100 12 C -0.182 4.182 13 C -0.129 4.129 14 C 0.518 3.482 15 O -0.544 6.544 16 O -0.352 6.352 17 C 0.061 3.939 18 C -0.120 4.120 19 C 0.112 3.888 20 N -0.457 5.457 21 C -0.053 4.053 22 C -0.059 4.059 23 N -0.540 5.540 24 C 0.175 3.825 25 C -0.124 4.124 26 H 0.288 0.712 27 H 0.114 0.886 28 H 0.140 0.860 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.199 0.801 37 H 0.179 0.821 38 H 0.229 0.771 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 -8.990 -7.278 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.804 3.196 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.523 4.523 8 H 0.105 0.895 9 C 0.062 3.938 10 C -0.224 4.224 11 C -0.118 4.118 12 C -0.201 4.201 13 C -0.131 4.131 14 C 0.366 3.634 15 O -0.436 6.436 16 O -0.268 6.268 17 C -0.013 4.013 18 C -0.158 4.158 19 C -0.010 4.010 20 N -0.139 5.139 21 C -0.186 4.186 22 C -0.206 4.206 23 N -0.259 5.259 24 C -0.107 4.107 25 C -0.144 4.144 26 H 0.099 0.901 27 H 0.133 0.867 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.216 0.784 37 H 0.196 0.804 38 H 0.245 0.755 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.802 -9.076 -7.907 15.524 hybrid contribution 0.050 1.604 0.631 1.724 sum -9.752 -7.473 -7.277 14.279 Atomic orbital electron populations 1.69856 1.09227 1.30872 1.35119 1.26854 0.95433 1.04962 0.91213 0.85223 0.78711 0.75372 0.80307 1.18443 1.19650 1.17713 1.19841 0.98735 0.91966 1.41734 0.89465 1.17914 0.91728 0.94049 0.90062 1.21501 1.03614 0.92556 1.04709 1.20965 0.95280 0.98030 0.97507 1.20944 0.99805 0.95425 1.03935 1.19090 0.95629 0.96020 1.02314 1.21586 0.82714 0.81293 0.77798 1.90743 1.65876 1.32386 1.54571 1.86536 1.43143 1.34091 1.63068 1.23090 0.85491 0.98952 0.93778 1.21758 0.97762 0.94930 1.01400 1.21846 0.96067 0.80719 1.02351 1.45669 1.30716 1.15796 1.21737 1.23211 0.97958 0.95512 1.01878 1.22675 1.03577 0.98793 0.95565 1.70263 1.10867 1.23118 1.21639 1.25571 1.03004 0.87191 0.94979 1.21476 0.98213 0.95925 0.98768 0.90089 0.86750 0.84257 0.85031 0.90285 0.90715 0.90353 0.89974 0.86784 0.86106 0.78440 0.80363 0.75521 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.06 10.96 21.83 0.24 -43.82 16 2 C 0.03 1.53 5.14 85.26 0.44 1.97 16 3 Si 0.98 37.88 29.59 68.60 2.03 39.91 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 7 C -0.49 -25.83 9.05 23.47 0.21 -25.62 16 8 H 0.09 4.28 7.91 -2.91 -0.02 4.26 16 9 C 0.06 3.40 5.57 -21.32 -0.12 3.28 16 10 C -0.20 -9.26 9.78 22.77 0.22 -9.04 16 11 C -0.10 -3.95 10.01 22.17 0.22 -3.73 16 12 C -0.18 -7.41 9.62 22.71 0.22 -7.19 16 13 C -0.13 -6.06 5.87 -20.14 -0.12 -6.18 16 14 C 0.52 22.15 7.90 70.34 0.56 22.70 16 15 O -0.54 -25.73 16.12 19.96 0.32 -25.41 16 16 O -0.35 -11.66 9.46 -56.21 -0.53 -12.19 16 17 C 0.06 1.38 5.47 71.98 0.39 1.78 16 18 C -0.12 -1.84 5.92 30.59 0.18 -1.66 16 19 C 0.11 1.15 6.15 86.38 0.53 1.68 16 20 N -0.46 -6.76 2.75 -529.05 -1.46 -8.22 16 21 C -0.05 -0.82 11.58 83.09 0.96 0.15 16 22 C -0.06 -1.16 11.87 83.52 0.99 -0.17 16 23 N -0.54 -12.61 11.25 -200.31 -2.25 -14.87 16 24 C 0.17 3.06 12.56 180.26 2.26 5.33 16 25 C -0.12 -6.64 8.24 23.02 0.19 -6.45 16 26 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 27 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 28 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 29 H 0.13 4.57 7.59 -2.91 -0.02 4.55 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.18 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.23 2.43 8.06 -2.91 -0.02 2.40 16 39 H 0.11 6.26 5.74 -2.91 -0.02 6.25 16 Total: -1.00 -69.41 344.85 6.55 -62.86 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 1.06 Total: 24.90 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 7.15 Total: -23.16 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: -3.47 Total: -66.91 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -0.21 Total: -37.60 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Total: -69.41 6.55 -62.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783016708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.277 kcal (2) G-P(sol) polarization free energy of solvation -69.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds