Wall clock time and date at job start Fri Apr 10 2020 20:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48506 * 109.47024 * 269.99895 * 3 2 1 5 5 H 1.48489 * 109.47207 * 29.99846 * 3 2 1 6 6 H 1.48496 * 109.47113 * 150.00310 * 3 2 1 7 7 C 1.40034 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99485 * 180.02562 * 7 2 1 9 9 C 1.41313 * 120.00098 * 359.97438 * 7 2 1 10 10 C 1.40595 * 119.78089 * 180.02562 * 9 7 2 11 11 C 1.38351 * 119.14426 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68021 * 0.27837 * 11 10 9 13 13 C 1.39760 * 119.49120 * 359.45190 * 12 11 10 14 14 N 1.38823 * 119.58258 * 180.28342 * 13 12 11 15 15 C 1.47016 * 110.99802 * 303.90880 * 14 13 12 16 16 C 1.53101 * 109.25733 * 177.60862 * 15 14 13 17 17 O 1.43018 * 109.25686 * 56.84900 * 16 15 14 18 18 C 1.43015 * 113.74002 * 301.32570 * 17 16 15 19 19 H 1.08993 * 109.51078 * 298.74197 * 18 17 16 20 20 C 1.50696 * 109.54409 * 178.62352 * 18 17 16 21 21 C 1.34522 * 125.78889 * 145.19589 * 20 18 17 22 22 C 1.41381 * 106.84214 * 180.02562 * 21 20 18 23 23 C 1.34512 * 106.84106 * 0.02562 * 22 21 20 24 24 O 1.34305 * 108.42188 * 359.73444 * 23 22 21 25 25 C 1.47010 * 111.00039 * 180.27297 * 14 13 12 26 26 N 1.31977 * 120.83137 * 0.55630 * 13 12 11 27 27 H 0.97005 * 119.99873 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.42621 * 359.97438 * 10 9 7 29 29 H 1.08002 * 120.65533 * 179.97438 * 11 10 9 30 30 H 1.08002 * 120.25227 * 179.70432 * 12 11 10 31 31 H 1.09000 * 109.50759 * 297.54419 * 15 14 13 32 32 H 1.08995 * 109.50523 * 57.67674 * 15 14 13 33 33 H 1.09003 * 109.51020 * 296.91795 * 16 15 14 34 34 H 1.09001 * 109.50510 * 176.78156 * 16 15 14 35 35 H 1.07995 * 126.57683 * 0.04411 * 21 20 18 36 36 H 1.07993 * 126.58035 * 180.02562 * 22 21 20 37 37 H 1.07998 * 125.79354 * 179.97438 * 23 22 21 38 38 H 1.08997 * 109.51193 * 302.33058 * 25 14 13 39 39 H 1.09004 * 109.50750 * 62.41382 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6526 0.6999 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3008 -2.4365 -0.0005 10 6 2.0084 -3.6515 -0.0005 11 6 1.3033 -4.8418 -0.0011 12 6 -0.0822 -4.7944 -0.0075 13 6 -0.7283 -3.5551 -0.0016 14 7 -2.1156 -3.5055 -0.0021 15 6 -2.6689 -4.2461 -1.1452 16 6 -4.1979 -4.2162 -1.0739 17 8 -4.6422 -2.8571 -1.0432 18 6 -4.1229 -2.1064 0.0579 19 1 -4.4530 -2.5572 0.9937 20 6 -4.6214 -0.6865 -0.0203 21 6 -4.9287 0.0982 1.0283 22 6 -5.3519 1.3398 0.5006 23 6 -5.2785 1.2394 -0.8387 24 8 -4.8302 0.0118 -1.1484 25 6 -2.5931 -2.1151 -0.0019 26 7 -0.0361 -2.4315 -0.0010 27 1 -0.4850 0.8401 -0.0004 28 1 3.0884 -3.6554 -0.0010 29 1 1.8220 -5.7891 -0.0015 30 1 -0.6579 -5.7082 -0.0129 31 1 -2.3386 -3.7815 -2.0742 32 1 -2.3232 -5.2793 -1.1112 33 1 -4.5304 -4.7282 -0.1709 34 1 -4.6129 -4.7150 -1.9498 35 1 -4.8642 -0.1688 2.0727 36 1 -5.6725 2.2031 1.0647 37 1 -5.5328 2.0156 -1.5452 38 1 -2.1919 -1.5926 0.8665 39 1 -2.2609 -1.6161 -0.9123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:47:50 Heat of formation + Delta-G solvation = 28.211636 kcal Electronic energy + Delta-G solvation = -24562.498212 eV Core-core repulsion = 21051.536505 eV Total energy + Delta-G solvation = -3510.961707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.31886 -39.63859 -37.94922 -35.13350 -33.43127 -32.93637 -31.95421 -30.54038 -29.65347 -28.45383 -26.51632 -25.24683 -23.76567 -21.81979 -21.40134 -21.19116 -20.14494 -19.71873 -17.74357 -17.30687 -16.23455 -15.99435 -15.63377 -15.12717 -14.89191 -14.70726 -14.47115 -14.26866 -14.24212 -13.46487 -13.20335 -12.89927 -12.59025 -12.45540 -12.17973 -12.04701 -11.75195 -11.36330 -11.21563 -11.07610 -10.96008 -10.74431 -10.61940 -10.42272 -10.03757 -9.73114 -9.63170 -9.37249 -8.76507 -8.22456 -8.08324 -7.66265 -7.06454 -6.45591 -4.56319 1.94221 2.68109 2.80891 2.96428 3.06869 3.09404 3.18034 3.21520 3.85041 3.91754 4.34528 4.72534 4.98001 5.14301 5.20258 5.25843 5.36715 5.45155 5.52536 5.59728 5.81610 5.92642 5.98345 6.06293 6.08771 6.10510 6.24554 6.38638 6.48584 6.57246 6.66538 6.74938 6.81671 7.00451 7.09451 7.20388 7.34895 7.47174 7.60101 7.73033 7.74442 8.11959 8.28985 8.65570 8.93072 10.02421 10.26359 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.011237 B = 0.006748 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.144492 B = 4148.138120 C = 6338.667349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.430 4.430 8 H 0.084 0.916 9 C 0.274 3.726 10 C -0.293 4.293 11 C -0.045 4.045 12 C -0.320 4.320 13 C 0.320 3.680 14 N -0.480 5.480 15 C 0.025 3.975 16 C 0.067 3.933 17 O -0.380 6.380 18 C 0.168 3.832 19 H 0.090 0.910 20 C 0.016 3.984 21 C -0.204 4.204 22 C -0.214 4.214 23 C -0.045 4.045 24 O -0.161 6.161 25 C 0.056 3.944 26 N -0.507 5.507 27 H 0.272 0.728 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.199 0.801 38 H 0.105 0.895 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.650 -0.310 -0.475 9.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.154 4.154 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.461 4.461 8 H 0.102 0.898 9 C 0.148 3.852 10 C -0.316 4.316 11 C -0.069 4.069 12 C -0.345 4.345 13 C 0.082 3.918 14 N -0.199 5.199 15 C -0.103 4.103 16 C -0.010 4.010 17 O -0.299 6.299 18 C 0.110 3.890 19 H 0.108 0.892 20 C -0.035 4.035 21 C -0.223 4.223 22 C -0.233 4.233 23 C -0.114 4.114 24 O -0.055 6.055 25 C -0.071 4.071 26 N -0.224 5.224 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.216 0.784 38 H 0.124 0.876 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.520 0.379 -0.477 10.538 hybrid contribution 1.318 0.327 -0.218 1.375 sum -9.202 0.706 -0.695 9.255 Atomic orbital electron populations 1.70086 1.07093 1.27680 1.28550 1.26037 0.94918 1.00955 0.93528 0.86362 0.80515 0.80975 0.79209 1.19477 1.20114 1.18555 1.19594 0.94234 0.89322 1.42944 0.89834 1.18318 0.87282 0.92004 0.87570 1.21653 0.98646 0.93457 1.17836 1.20698 0.93543 0.96611 0.96051 1.20648 0.94302 0.95700 1.23870 1.19720 0.87690 0.90668 0.93737 1.59405 1.06711 1.14283 1.39486 1.22811 0.95114 1.00000 0.92332 1.22703 0.93089 0.82897 1.02314 1.88004 1.70768 1.23024 1.48125 1.20740 0.94189 0.83499 0.90583 0.89237 1.21971 1.03772 0.93931 0.83861 1.21453 1.07025 0.94316 0.99548 1.21727 1.07871 0.99347 0.94339 1.24001 1.03835 0.86596 0.96922 1.84085 1.64494 1.22975 1.33992 1.22435 0.89982 0.88862 1.05826 1.68622 1.07998 1.24751 1.21074 0.91699 0.88419 0.88515 0.88668 0.93469 0.89163 0.92210 0.88247 0.83428 0.83623 0.78419 0.87641 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.39 11.46 55.55 0.64 -17.75 16 2 C 0.07 1.78 5.50 -17.34 -0.10 1.69 16 3 Si 0.91 18.55 29.56 -169.99 -5.02 13.53 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.43 -11.35 9.14 -37.74 -0.34 -11.69 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.27 7.44 6.55 -85.00 -0.56 6.88 16 10 C -0.29 -7.20 9.83 -38.65 -0.38 -7.58 16 11 C -0.04 -1.00 10.15 -39.39 -0.40 -1.40 16 12 C -0.32 -7.21 9.24 -38.87 -0.36 -7.57 16 13 C 0.32 7.70 6.41 -155.32 -1.00 6.70 16 14 N -0.48 -9.90 4.75 -172.86 -0.82 -10.73 16 15 C 0.02 0.43 5.39 -3.71 -0.02 0.41 16 16 C 0.07 0.96 7.01 37.21 0.26 1.22 16 17 O -0.38 -6.56 10.44 -39.78 -0.42 -6.98 16 18 C 0.17 2.93 3.26 -27.83 -0.09 2.84 16 19 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 20 C 0.02 0.28 6.22 -35.62 -0.22 0.05 16 21 C -0.20 -3.14 10.81 -39.70 -0.43 -3.57 16 22 C -0.21 -2.92 10.91 -39.70 -0.43 -3.35 16 23 C -0.05 -0.63 12.09 29.42 0.36 -0.27 16 24 O -0.16 -2.82 10.63 1.15 0.01 -2.81 16 25 C 0.06 1.18 4.08 -3.71 -0.02 1.16 16 26 N -0.51 -13.57 6.18 -10.33 -0.06 -13.63 16 27 H 0.27 6.51 8.29 -40.82 -0.34 6.17 16 28 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 29 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.10 1.91 7.16 -52.49 -0.38 1.53 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.41 6.80 -51.93 -0.35 1.06 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.20 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.11 2.44 7.85 -51.93 -0.41 2.03 16 39 H 0.07 1.60 8.02 -51.93 -0.42 1.18 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -30.08 329.75 -9.34 -39.42 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.90 Total: 8.46 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -3.73 Total: -14.48 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: -0.25 Total: -42.11 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.40 Total: -9.78 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.08 -9.34 -39.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.631 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds