Wall clock time and date at job start Fri Apr 10 2020 20:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48506 * 109.47024 * 269.99895 * 3 2 1 5 5 H 1.48489 * 109.47207 * 29.99846 * 3 2 1 6 6 H 1.48496 * 109.47113 * 150.00310 * 3 2 1 7 7 C 1.40034 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99485 * 180.02562 * 7 2 1 9 9 C 1.41313 * 120.00098 * 359.97438 * 7 2 1 10 10 C 1.40595 * 119.78089 * 180.02562 * 9 7 2 11 11 C 1.38351 * 119.14426 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68021 * 0.27837 * 11 10 9 13 13 C 1.39760 * 119.49120 * 359.45190 * 12 11 10 14 14 N 1.38823 * 119.58258 * 180.28342 * 13 12 11 15 15 C 1.47016 * 110.99802 * 303.90880 * 14 13 12 16 16 C 1.53101 * 109.25733 * 177.60862 * 15 14 13 17 17 O 1.43018 * 109.25686 * 56.84900 * 16 15 14 18 18 C 1.43015 * 113.74002 * 301.32570 * 17 16 15 19 19 H 1.08993 * 109.51078 * 298.74197 * 18 17 16 20 20 C 1.50696 * 109.54409 * 178.62352 * 18 17 16 21 21 C 1.34522 * 125.78889 * 145.19589 * 20 18 17 22 22 C 1.41381 * 106.84214 * 180.02562 * 21 20 18 23 23 C 1.34512 * 106.84106 * 0.02562 * 22 21 20 24 24 O 1.34305 * 108.42188 * 359.73444 * 23 22 21 25 25 C 1.47010 * 111.00039 * 180.27297 * 14 13 12 26 26 N 1.31977 * 120.83137 * 0.55630 * 13 12 11 27 27 H 0.97005 * 119.99873 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.42621 * 359.97438 * 10 9 7 29 29 H 1.08002 * 120.65533 * 179.97438 * 11 10 9 30 30 H 1.08002 * 120.25227 * 179.70432 * 12 11 10 31 31 H 1.09000 * 109.50759 * 297.54419 * 15 14 13 32 32 H 1.08995 * 109.50523 * 57.67674 * 15 14 13 33 33 H 1.09003 * 109.51020 * 296.91795 * 16 15 14 34 34 H 1.09001 * 109.50510 * 176.78156 * 16 15 14 35 35 H 1.07995 * 126.57683 * 0.04411 * 21 20 18 36 36 H 1.07993 * 126.58035 * 180.02562 * 22 21 20 37 37 H 1.07998 * 125.79354 * 179.97438 * 23 22 21 38 38 H 1.08997 * 109.51193 * 302.33058 * 25 14 13 39 39 H 1.09004 * 109.50750 * 62.41382 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6526 0.6999 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3008 -2.4365 -0.0005 10 6 2.0084 -3.6515 -0.0005 11 6 1.3033 -4.8418 -0.0011 12 6 -0.0822 -4.7944 -0.0075 13 6 -0.7283 -3.5551 -0.0016 14 7 -2.1156 -3.5055 -0.0021 15 6 -2.6689 -4.2461 -1.1452 16 6 -4.1979 -4.2162 -1.0739 17 8 -4.6422 -2.8571 -1.0432 18 6 -4.1229 -2.1064 0.0579 19 1 -4.4530 -2.5572 0.9937 20 6 -4.6214 -0.6865 -0.0203 21 6 -4.9287 0.0982 1.0283 22 6 -5.3519 1.3398 0.5006 23 6 -5.2785 1.2394 -0.8387 24 8 -4.8302 0.0118 -1.1484 25 6 -2.5931 -2.1151 -0.0019 26 7 -0.0361 -2.4315 -0.0010 27 1 -0.4850 0.8401 -0.0004 28 1 3.0884 -3.6554 -0.0010 29 1 1.8220 -5.7891 -0.0015 30 1 -0.6579 -5.7082 -0.0129 31 1 -2.3386 -3.7815 -2.0742 32 1 -2.3232 -5.2793 -1.1112 33 1 -4.5304 -4.7282 -0.1709 34 1 -4.6129 -4.7150 -1.9498 35 1 -4.8642 -0.1688 2.0727 36 1 -5.6725 2.2031 1.0647 37 1 -5.5328 2.0156 -1.5452 38 1 -2.1919 -1.5926 0.8665 39 1 -2.2609 -1.6161 -0.9123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:47:49 Heat of formation + Delta-G solvation = 10.173899 kcal Electronic energy + Delta-G solvation = -24563.280387 eV Core-core repulsion = 21051.536505 eV Total energy + Delta-G solvation = -3511.743882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.50561 -41.21569 -39.60803 -36.76115 -35.27165 -34.17309 -33.24397 -32.35133 -31.41216 -29.79627 -28.20831 -26.90510 -25.23419 -23.32268 -22.98603 -22.63907 -21.56824 -21.16991 -19.46901 -18.71973 -17.79072 -17.35022 -16.90689 -16.75498 -16.40516 -16.37082 -16.04386 -15.82055 -15.79763 -15.08858 -14.62979 -14.48594 -13.87739 -13.82030 -13.72248 -13.50565 -13.16121 -12.91595 -12.78578 -12.72277 -12.65686 -12.54897 -12.24270 -11.89307 -11.73347 -11.36394 -10.95968 -10.81905 -10.47022 -9.96578 -9.54959 -9.41351 -8.89221 -8.31600 -6.52962 0.74280 0.84616 1.15643 1.36799 1.48399 1.51321 1.68911 2.07360 2.19302 2.59300 2.71713 2.91707 3.73517 3.79611 3.87555 3.94612 4.05314 4.15281 4.16912 4.27563 4.30270 4.45400 4.51148 4.65516 4.78149 4.83724 4.85562 4.87265 4.90828 4.98882 5.06831 5.15601 5.20500 5.23412 5.57762 5.59539 5.80957 5.88130 5.93245 5.98400 6.23418 6.26743 6.41265 6.75482 7.00767 8.13512 8.40673 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.011237 B = 0.006748 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.144492 B = 4148.138120 C = 6338.667349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.027 3.973 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.465 4.465 8 H 0.087 0.913 9 C 0.239 3.761 10 C -0.316 4.316 11 C -0.041 4.041 12 C -0.317 4.317 13 C 0.298 3.702 14 N -0.476 5.476 15 C 0.024 3.976 16 C 0.068 3.932 17 O -0.393 6.393 18 C 0.180 3.820 19 H 0.108 0.892 20 C -0.024 4.024 21 C -0.203 4.203 22 C -0.220 4.220 23 C -0.045 4.045 24 O -0.189 6.189 25 C 0.078 3.922 26 N -0.535 5.535 27 H 0.274 0.726 28 H 0.107 0.893 29 H 0.137 0.863 30 H 0.126 0.874 31 H 0.021 0.979 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.162 0.838 36 H 0.177 0.823 37 H 0.238 0.762 38 H 0.073 0.927 39 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.748 -0.603 -0.284 10.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.196 4.196 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.497 4.497 8 H 0.105 0.895 9 C 0.113 3.887 10 C -0.338 4.338 11 C -0.065 4.065 12 C -0.342 4.342 13 C 0.061 3.939 14 N -0.195 5.195 15 C -0.103 4.103 16 C -0.008 4.008 17 O -0.312 6.312 18 C 0.122 3.878 19 H 0.126 0.874 20 C -0.074 4.074 21 C -0.222 4.222 22 C -0.238 4.238 23 C -0.112 4.112 24 O -0.085 6.085 25 C -0.050 4.050 26 N -0.254 5.254 27 H 0.084 0.916 28 H 0.126 0.874 29 H 0.155 0.845 30 H 0.144 0.856 31 H 0.040 0.960 32 H 0.130 0.870 33 H 0.101 0.899 34 H 0.152 0.848 35 H 0.180 0.820 36 H 0.194 0.806 37 H 0.254 0.746 38 H 0.091 0.909 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -11.631 0.051 -0.285 11.635 hybrid contribution 1.605 0.318 -0.292 1.662 sum -10.026 0.369 -0.578 10.050 Atomic orbital electron populations 1.70223 1.08538 1.28523 1.29159 1.26911 0.95748 1.04220 0.92680 0.85227 0.79187 0.76160 0.79291 1.19044 1.19372 1.17804 1.19922 0.94653 0.90345 1.44766 0.89451 1.18815 0.88005 0.93431 0.88432 1.21847 0.99345 0.93698 1.18959 1.21130 0.93695 0.97492 0.94222 1.21032 0.94798 0.96172 1.22168 1.20283 0.89243 0.90942 0.93476 1.59510 1.05087 1.14207 1.40706 1.22991 0.97308 1.00127 0.89831 1.22974 0.90684 0.82008 1.05114 1.88003 1.70568 1.24419 1.48197 1.20575 0.91267 0.84509 0.91483 0.87442 1.22083 1.06337 0.94418 0.84571 1.21836 1.05656 0.94781 0.99939 1.22136 1.07551 0.99617 0.94541 1.24896 1.02170 0.85913 0.98225 1.84052 1.65335 1.24503 1.34657 1.22075 0.92601 0.88353 1.01949 1.68601 1.08260 1.26464 1.22045 0.91590 0.87449 0.84548 0.85580 0.96003 0.87037 0.89936 0.84785 0.81992 0.80557 0.74610 0.90865 0.96064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -40.25 11.46 21.84 0.25 -40.00 16 2 C 0.03 1.38 5.50 85.29 0.47 1.85 16 3 Si 0.98 38.96 29.56 68.60 2.03 40.99 16 4 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 5 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 7 C -0.47 -25.62 9.14 23.46 0.21 -25.41 16 8 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 9 C 0.24 13.50 6.55 40.19 0.26 13.76 16 10 C -0.32 -15.73 9.83 22.87 0.22 -15.51 16 11 C -0.04 -1.79 10.15 22.39 0.23 -1.57 16 12 C -0.32 -13.92 9.24 22.73 0.21 -13.71 16 13 C 0.30 14.63 6.41 133.40 0.86 15.49 16 14 N -0.48 -19.90 4.75 -700.81 -3.33 -23.23 16 15 C 0.02 0.81 5.39 86.31 0.47 1.28 16 16 C 0.07 1.82 7.01 72.02 0.50 2.32 16 17 O -0.39 -13.31 10.44 -144.63 -1.51 -14.82 16 18 C 0.18 6.35 3.26 29.88 0.10 6.45 16 19 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 20 C -0.02 -0.83 6.22 24.83 0.15 -0.67 16 21 C -0.20 -6.14 10.81 22.19 0.24 -5.90 16 22 C -0.22 -5.64 10.91 22.19 0.24 -5.40 16 23 C -0.04 -1.19 12.09 66.97 0.81 -0.38 16 24 O -0.19 -6.71 10.63 1.82 0.02 -6.70 16 25 C 0.08 3.42 4.08 86.32 0.35 3.78 16 26 N -0.54 -29.96 6.18 -186.59 -1.15 -31.11 16 27 H 0.27 13.76 8.29 -92.70 -0.77 12.99 16 28 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 29 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.13 4.67 7.16 -2.91 -0.02 4.65 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 3.24 6.80 -2.39 -0.02 3.22 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.13 2.65 8.14 -2.39 -0.02 2.64 16 35 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 36 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 37 H 0.24 3.93 8.06 -2.91 -0.02 3.91 16 38 H 0.07 3.62 7.85 -2.39 -0.02 3.61 16 39 H 0.02 1.09 8.02 -2.39 -0.02 1.08 16 Total: -1.00 -69.57 329.75 2.70 -66.87 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 1.06 Total: 31.61 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: 5.33 Total: -23.61 kcal Atomic # 7 Polarization: -90.11 SS G_CDS: -4.23 Total: -94.34 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -1.49 Total: -21.52 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -69.57 2.70 -66.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.048 kcal (2) G-P(sol) polarization free energy of solvation -69.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds