Wall clock time and date at job start Fri Apr 10 2020 20:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48502 * 109.47229 * 270.00379 * 3 2 1 5 5 H 1.48505 * 109.46921 * 29.99876 * 3 2 1 6 6 H 1.48500 * 109.47099 * 150.00330 * 3 2 1 7 7 C 1.40023 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00677 * 179.97438 * 7 2 1 9 9 C 1.41326 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.40580 * 119.78657 * 180.02562 * 9 7 2 11 11 C 1.38345 * 119.15067 * 180.02562 * 10 9 7 12 12 C 1.38646 * 118.67628 * 359.74592 * 11 10 9 13 13 C 1.39748 * 119.49186 * 0.47546 * 12 11 10 14 14 N 1.38824 * 119.58187 * 179.78948 * 13 12 11 15 15 C 1.47010 * 111.00349 * 303.68246 * 14 13 12 16 16 C 1.53100 * 109.26429 * 182.39628 * 15 14 13 17 17 O 1.43022 * 109.25287 * 303.15345 * 16 15 14 18 18 C 1.43008 * 113.74151 * 58.66592 * 17 16 15 19 19 H 1.09005 * 109.50750 * 61.30553 * 18 17 16 20 20 C 1.50700 * 109.51096 * 181.39404 * 18 17 16 21 21 C 1.34507 * 125.79177 * 220.00030 * 20 18 17 22 22 C 1.41385 * 106.84104 * 179.97438 * 21 20 18 23 23 C 1.34515 * 106.84000 * 0.02562 * 22 21 20 24 24 O 1.34300 * 125.78413 * 39.97552 * 20 18 17 25 25 C 1.47012 * 110.99977 * 67.32122 * 14 13 12 26 26 N 1.31976 * 120.83386 * 359.51835 * 13 12 11 27 27 H 0.97001 * 120.00076 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.42672 * 0.02562 * 10 9 7 29 29 H 1.08005 * 120.66551 * 180.02562 * 11 10 9 30 30 H 1.08002 * 120.24951 * 180.27432 * 12 11 10 31 31 H 1.08999 * 109.51159 * 62.45426 * 15 14 13 32 32 H 1.09004 * 109.50926 * 302.32663 * 15 14 13 33 33 H 1.08992 * 109.50971 * 183.21914 * 16 15 14 34 34 H 1.08998 * 109.54488 * 63.10069 * 16 15 14 35 35 H 1.08003 * 126.58477 * 359.94862 * 21 20 18 36 36 H 1.08001 * 126.58267 * 179.73335 * 22 21 20 37 37 H 1.07996 * 125.79027 * 180.02562 * 23 22 21 38 38 H 1.08993 * 109.50716 * 57.67168 * 25 14 13 39 39 H 1.09000 * 109.50339 * 297.53525 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5391 1.4401 0.7000 7 6 2.0076 -1.2126 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3010 -2.4366 -0.0005 10 6 2.0084 -3.6514 -0.0005 11 6 1.3034 -4.8417 -0.0011 12 6 -0.0822 -4.7943 0.0038 13 6 -0.7282 -3.5552 -0.0010 14 7 -2.1156 -3.5056 -0.0006 15 6 -2.6699 -4.2521 -1.1393 16 6 -4.1953 -4.1216 -1.1344 17 8 -4.7044 -4.5879 0.1182 18 6 -4.1860 -3.8824 1.2490 19 1 -4.4627 -2.8304 1.1798 20 6 -4.7562 -4.4706 2.5139 21 6 -5.1580 -3.7757 3.5931 22 6 -5.6206 -4.7192 4.5390 23 6 -5.4733 -5.9344 3.9813 24 8 -4.9497 -5.7777 2.7545 25 6 -2.6604 -4.0104 1.2681 26 7 -0.0361 -2.4315 -0.0006 27 1 -0.4850 0.8400 -0.0004 28 1 3.0884 -3.6554 -0.0001 29 1 1.8221 -5.7891 -0.0007 30 1 -0.6578 -5.7082 0.0080 31 1 -2.3942 -5.3032 -1.0544 32 1 -2.2729 -3.8450 -2.0693 33 1 -4.6144 -4.7202 -1.9431 34 1 -4.4724 -3.0767 -1.2735 35 1 -5.1319 -2.7028 3.7142 36 1 -6.0123 -4.5057 5.5226 37 1 -5.7330 -6.8762 4.4416 38 1 -2.2566 -3.4269 2.0954 39 1 -2.3846 -5.0576 1.3915 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636488.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:47:57 Heat of formation + Delta-G solvation = 31.399756 kcal Electronic energy + Delta-G solvation = -24056.646221 eV Core-core repulsion = 20545.822761 eV Total energy + Delta-G solvation = -3510.823459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.52237 -39.70091 -37.99329 -35.24785 -33.38443 -33.11227 -32.07432 -30.58825 -29.67090 -28.65585 -26.42860 -25.22903 -23.91694 -21.97168 -21.57757 -21.42195 -20.30666 -19.75568 -17.76646 -17.41031 -16.33301 -16.14639 -15.72897 -15.25122 -14.87165 -14.78648 -14.68644 -14.49231 -14.20406 -13.55420 -13.20538 -12.92517 -12.77404 -12.64159 -12.23646 -12.19524 -11.88003 -11.46146 -11.24919 -11.11691 -11.03188 -10.81931 -10.73833 -10.44990 -10.04979 -9.89965 -9.58748 -9.39572 -8.47694 -8.35273 -8.22321 -7.60396 -7.32819 -6.38321 -4.56930 1.72415 2.57411 2.62647 2.93896 3.02970 3.07562 3.10129 3.15845 3.77753 3.92231 4.19023 4.64672 4.83522 5.00010 5.06430 5.16071 5.24845 5.35957 5.50142 5.56792 5.77825 5.80875 5.83874 5.89980 6.00747 6.02896 6.08482 6.14095 6.17138 6.40646 6.48290 6.66235 6.72593 6.82985 7.08523 7.16189 7.27956 7.43921 7.48821 7.59139 7.68422 8.14575 8.20875 8.65112 8.88314 10.06940 10.28014 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.016920 B = 0.004094 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.444990 B = 6837.414729 C = 7299.085928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.427 4.427 8 H 0.085 0.915 9 C 0.261 3.739 10 C -0.282 4.282 11 C -0.049 4.049 12 C -0.344 4.344 13 C 0.317 3.683 14 N -0.482 5.482 15 C 0.030 3.970 16 C 0.067 3.933 17 O -0.379 6.379 18 C 0.177 3.823 19 H 0.100 0.900 20 C 0.006 3.994 21 C -0.201 4.201 22 C -0.215 4.215 23 C -0.044 4.044 24 O -0.163 6.163 25 C 0.046 3.954 26 N -0.456 5.456 27 H 0.274 0.726 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.201 0.799 38 H 0.089 0.911 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.752 -5.774 3.584 11.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.159 4.159 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.458 4.458 8 H 0.103 0.897 9 C 0.136 3.864 10 C -0.305 4.305 11 C -0.073 4.073 12 C -0.370 4.370 13 C 0.079 3.921 14 N -0.204 5.204 15 C -0.098 4.098 16 C -0.010 4.010 17 O -0.299 6.299 18 C 0.119 3.881 19 H 0.117 0.883 20 C -0.045 4.045 21 C -0.220 4.220 22 C -0.234 4.234 23 C -0.112 4.112 24 O -0.058 6.058 25 C -0.082 4.082 26 N -0.169 5.169 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.169 0.831 36 H 0.166 0.834 37 H 0.218 0.782 38 H 0.107 0.893 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.534 -4.660 3.338 11.993 hybrid contribution 1.265 -0.720 0.300 1.486 sum -9.269 -5.380 3.638 11.318 Atomic orbital electron populations 1.70165 1.06983 1.27857 1.27271 1.26093 0.94953 1.01046 0.93849 0.86349 0.80476 0.80906 0.79251 1.19392 1.20068 1.18560 1.19627 0.94295 0.89298 1.42576 0.89659 1.18464 0.87325 0.92056 0.88568 1.21741 0.98763 0.93502 1.16455 1.20706 0.93588 0.96625 0.96410 1.21537 0.95317 0.97253 1.22924 1.19398 0.87527 0.89226 0.95904 1.58654 1.05819 1.54560 1.01406 1.22729 0.94971 0.96967 0.95162 1.22738 0.92695 1.00323 0.85248 1.87993 1.67595 1.60181 1.14089 1.20537 0.92078 0.94985 0.80517 0.88256 1.22085 1.04187 0.80965 0.97276 1.21563 1.05526 1.01010 0.93901 1.21793 1.07487 0.92436 1.01687 1.24062 1.02580 1.00308 0.84271 1.84083 1.62976 1.26848 1.31882 1.22617 0.92807 0.99553 0.93203 1.68387 1.06918 1.25430 1.16154 0.91489 0.88238 0.88731 0.89225 0.93699 0.89496 0.88232 0.91805 0.83108 0.83415 0.78228 0.89282 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.52 11.46 55.55 0.64 -17.88 16 2 C 0.07 1.68 5.50 -17.35 -0.10 1.59 16 3 Si 0.91 18.31 29.56 -169.99 -5.02 13.29 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 7 C -0.43 -11.30 9.14 -37.74 -0.34 -11.64 16 8 H 0.09 2.10 7.85 -52.49 -0.41 1.69 16 9 C 0.26 7.12 6.55 -84.99 -0.56 6.56 16 10 C -0.28 -6.93 9.83 -38.66 -0.38 -7.31 16 11 C -0.05 -1.11 10.15 -39.39 -0.40 -1.51 16 12 C -0.34 -7.89 8.66 -38.87 -0.34 -8.23 16 13 C 0.32 7.72 5.72 -155.32 -0.89 6.83 16 14 N -0.48 -10.07 4.78 -172.87 -0.83 -10.90 16 15 C 0.03 0.52 5.30 -3.71 -0.02 0.51 16 16 C 0.07 0.97 7.01 37.21 0.26 1.23 16 17 O -0.38 -6.19 10.45 -37.27 -0.39 -6.58 16 18 C 0.18 2.86 3.27 -27.83 -0.09 2.77 16 19 H 0.10 1.53 8.13 -51.93 -0.42 1.11 16 20 C 0.01 0.09 6.21 -35.63 -0.22 -0.13 16 21 C -0.20 -2.71 10.80 -39.70 -0.43 -3.14 16 22 C -0.21 -2.51 10.91 -39.70 -0.43 -2.94 16 23 C -0.04 -0.51 12.09 29.42 0.36 -0.16 16 24 O -0.16 -2.48 10.65 3.67 0.04 -2.44 16 25 C 0.05 0.87 4.69 -3.71 -0.02 0.85 16 26 N -0.46 -12.50 7.89 -10.33 -0.08 -12.58 16 27 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 28 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 29 H 0.09 1.85 8.06 -52.48 -0.42 1.42 16 30 H 0.09 1.90 6.99 -52.49 -0.37 1.54 16 31 H 0.04 0.79 6.99 -51.93 -0.36 0.43 16 32 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.15 1.79 8.06 -52.48 -0.42 1.36 16 36 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.20 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.05 0.89 7.58 -51.93 -0.39 0.49 16 LS Contribution 330.61 15.07 4.98 4.98 Total: -1.00 -30.79 330.61 -9.16 -39.95 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.90 Total: 6.89 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -3.60 Total: -14.72 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: -0.27 Total: -41.37 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.35 Total: -9.02 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.79 -9.16 -39.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636488.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.347 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds