Wall clock time and date at job start Fri Apr 10 2020 20:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35567 * 116.99838 * 2 1 4 4 C 1.39127 * 119.47724 * 180.02562 * 3 2 1 5 5 C 1.38058 * 119.40533 * 179.76360 * 4 3 2 6 6 C 1.40111 * 118.41948 * 0.45173 * 5 4 3 7 7 C 1.47667 * 120.53578 * 179.79929 * 6 5 4 8 8 C 1.40059 * 119.46175 * 359.72563 * 7 6 5 9 9 C 1.36500 * 119.46121 * 180.02562 * 8 7 6 10 10 C 1.41364 * 118.43289 * 359.97438 * 9 8 7 11 11 C 1.41000 * 120.54159 * 179.72746 * 10 9 8 12 12 H 1.08001 * 119.99525 * 154.70777 * 11 10 9 13 13 C 1.39962 * 120.00322 * 334.70360 * 11 10 9 14 14 N 1.30831 * 119.99939 * 343.71319 * 13 11 10 15 15 Si 1.86802 * 120.00052 * 163.70989 * 13 11 10 16 16 H 1.48494 * 109.46940 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46644 * 120.00431 * 15 13 11 18 18 H 1.48505 * 109.46890 * 240.00318 * 15 13 11 19 19 C 1.40949 * 118.91197 * 359.97438 * 10 9 8 20 20 C 1.50704 * 119.79313 * 179.97438 * 19 10 9 21 21 N 1.31258 * 120.41422 * 0.02562 * 19 10 9 22 22 C 1.40294 * 118.93359 * 359.52619 * 6 5 4 23 23 O 1.35513 * 119.76134 * 180.23150 * 22 6 5 24 24 C 1.42902 * 116.99953 * 180.02562 * 23 22 6 25 25 N 1.32174 * 120.47617 * 0.25236 * 22 6 5 26 26 H 1.09004 * 109.47405 * 300.00681 * 1 2 3 27 27 H 1.09003 * 109.46850 * 60.00539 * 1 2 3 28 28 H 1.08998 * 109.47016 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.29677 * 359.97149 * 4 3 2 30 30 H 1.07996 * 120.79434 * 180.22708 * 5 4 3 31 31 H 1.07998 * 120.26930 * 359.97438 * 8 7 6 32 32 H 1.08001 * 120.78690 * 180.02562 * 9 8 7 33 33 H 0.96999 * 120.00228 * 179.97438 * 14 13 11 34 34 H 1.08990 * 109.47318 * 89.99994 * 20 19 10 35 35 H 1.09001 * 109.46734 * 210.00667 * 20 19 10 36 36 H 1.09000 * 109.46886 * 329.99889 * 20 19 10 37 37 H 1.08999 * 109.47540 * 179.97438 * 24 23 22 38 38 H 1.09005 * 109.47151 * 300.00303 * 24 23 22 39 39 H 1.09005 * 109.47020 * 59.99476 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2079 0.0000 4 6 3.4344 1.2681 -0.0005 5 6 4.0596 2.4990 -0.0055 6 6 3.2630 3.6516 -0.0001 7 6 3.8826 4.9919 -0.0006 8 6 5.2786 5.1055 -0.0007 9 6 5.8514 6.3445 -0.0006 10 6 5.0054 7.4771 -0.0011 11 6 5.5496 8.7778 0.0048 12 1 4.9795 9.6034 -0.3950 13 6 6.8285 8.9991 0.5286 14 7 7.3889 8.0949 1.2902 15 14 7.7352 10.5855 0.1403 16 1 6.8904 11.4369 -0.7352 17 1 8.0269 11.3106 1.4030 18 1 9.0089 10.2701 -0.5551 19 6 3.6091 7.2847 -0.0021 20 6 2.6888 8.4781 -0.0019 21 7 3.1054 6.0727 -0.0021 22 6 1.8670 3.5118 -0.0001 23 8 1.0805 4.6153 0.0003 24 6 -0.3329 4.4045 0.0008 25 7 1.3135 2.3115 -0.0001 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 4.0191 0.3600 -0.0005 30 1 5.1371 2.5718 -0.0097 31 1 5.8968 4.2200 0.0000 32 1 6.9255 6.4569 -0.0011 33 1 8.2754 8.2481 1.6530 34 1 2.4676 8.7665 -1.0295 35 1 1.7619 8.2220 0.5112 36 1 3.1714 9.3090 0.5127 37 1 -0.8439 5.3673 0.0016 38 1 -0.6169 3.8427 -0.8891 39 1 -0.6161 3.8426 0.8909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241574439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:47:47 Heat of formation + Delta-G solvation = -10.618960 kcal Electronic energy + Delta-G solvation = -23766.890976 eV Core-core repulsion = 20254.245448 eV Total energy + Delta-G solvation = -3512.645528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.44048 -38.69268 -38.18922 -36.60830 -34.31536 -32.67444 -31.25856 -30.89154 -29.50847 -27.60424 -26.91147 -26.50651 -24.87083 -22.84581 -22.57150 -20.95824 -20.05384 -18.47931 -17.45933 -17.38596 -16.02974 -16.00248 -15.59167 -15.22947 -15.13627 -14.76538 -14.36169 -13.91090 -13.23995 -13.20290 -13.18284 -12.84477 -12.79768 -12.36273 -11.84861 -11.67672 -11.60586 -11.56768 -11.47260 -11.30799 -11.12946 -11.05916 -10.87073 -10.65526 -10.28435 -9.80386 -9.62447 -9.49324 -9.31560 -8.29992 -8.05885 -7.94245 -7.10805 -6.88346 -4.50454 1.40742 1.69805 2.64034 2.93952 2.96460 3.00689 3.17958 3.27955 3.63512 3.74808 4.14596 4.60717 4.63763 5.22647 5.26716 5.33560 5.37034 5.50898 5.57953 5.60106 5.60989 5.67093 5.79075 5.87755 6.05029 6.20208 6.34066 6.42362 6.61827 6.67868 6.75004 6.82000 6.88739 6.90307 7.11713 7.23062 7.32044 7.65342 7.79323 7.88310 7.88602 8.20165 8.33569 8.54045 8.64902 9.66404 9.90388 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.028338 B = 0.003709 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.833521 B = 7546.383914 C = 8440.569708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.312 6.312 3 C 0.322 3.678 4 C -0.219 4.219 5 C -0.035 4.035 6 C -0.078 4.078 7 C 0.011 3.989 8 C -0.129 4.129 9 C -0.141 4.141 10 C 0.073 3.927 11 C -0.431 4.431 12 H 0.089 0.911 13 C 0.072 3.928 14 N -0.778 5.778 15 Si 0.913 3.087 16 H -0.257 1.257 17 H -0.272 1.272 18 H -0.270 1.270 19 C 0.008 3.992 20 C -0.069 4.069 21 N -0.423 5.423 22 C 0.356 3.644 23 O -0.252 6.252 24 C 0.036 3.964 25 N -0.595 5.595 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.136 0.864 30 H 0.146 0.854 31 H 0.099 0.901 32 H 0.126 0.874 33 H 0.285 0.715 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.662 -7.657 -1.618 10.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.220 6.220 3 C 0.145 3.855 4 C -0.240 4.240 5 C -0.060 4.060 6 C -0.082 4.082 7 C -0.124 4.124 8 C -0.149 4.149 9 C -0.166 4.166 10 C 0.068 3.932 11 C -0.459 4.459 12 H 0.107 0.893 13 C -0.149 4.149 14 N -0.402 5.402 15 Si 0.737 3.263 16 H -0.180 1.180 17 H -0.197 1.197 18 H -0.195 1.195 19 C -0.138 4.138 20 C -0.127 4.127 21 N -0.131 5.131 22 C 0.176 3.824 23 O -0.155 6.155 24 C -0.060 4.060 25 N -0.334 5.334 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.154 0.846 30 H 0.163 0.837 31 H 0.117 0.883 32 H 0.143 0.857 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.082 -7.858 -1.465 11.367 hybrid contribution 1.848 0.644 -0.023 1.957 sum -6.234 -7.214 -1.488 9.650 Atomic orbital electron populations 1.22729 0.78101 1.02196 1.02136 1.86174 1.22223 1.25037 1.88527 1.19298 0.88961 0.83149 0.94113 1.20642 0.91273 0.99059 1.13033 1.21215 1.00210 0.89592 0.95001 1.18630 0.89274 0.93829 1.06486 1.18358 0.89283 0.89467 1.15285 1.21236 0.94269 0.97513 1.01914 1.21254 1.00178 0.91048 1.04084 1.18448 0.91659 0.94115 0.88997 1.19700 0.99117 0.94629 1.32503 0.89324 1.26079 0.97374 0.98863 0.92556 1.69809 1.15025 1.34444 1.20892 0.86163 0.79635 0.81069 0.79450 1.18035 1.19710 1.19478 1.21025 0.91725 0.91385 1.09699 1.20230 0.97216 0.95013 1.00233 1.66921 1.39755 0.98009 1.08462 1.19557 0.88467 0.83262 0.91080 1.86731 1.17018 1.25528 1.86243 1.22776 0.80085 1.02056 1.01065 1.66686 1.41557 0.98560 1.26570 0.92712 0.92716 0.89190 0.84603 0.83683 0.88264 0.85661 0.90357 0.93475 0.93145 0.91659 0.89100 0.93337 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.37 101.05 1.05 1.54 16 2 O -0.31 -4.58 10.47 -18.40 -0.19 -4.77 16 3 C 0.32 5.39 7.49 -16.99 -0.13 5.26 16 4 C -0.22 -3.45 10.02 -39.32 -0.39 -3.84 16 5 C -0.03 -0.60 9.51 -38.95 -0.37 -0.97 16 6 C -0.08 -1.62 5.91 -104.57 -0.62 -2.24 16 7 C 0.01 0.26 6.74 -82.78 -0.56 -0.30 16 8 C -0.13 -2.96 9.39 -39.53 -0.37 -3.33 16 9 C -0.14 -3.50 8.72 -39.02 -0.34 -3.84 16 10 C 0.07 1.85 5.58 -106.64 -0.59 1.26 16 11 C -0.43 -10.52 8.13 -37.89 -0.31 -10.83 16 12 H 0.09 2.05 6.86 -52.49 -0.36 1.69 16 13 C 0.07 1.65 5.18 -17.33 -0.09 1.56 16 14 N -0.78 -18.65 10.95 55.55 0.61 -18.05 16 15 Si 0.91 17.19 29.59 -169.99 -5.03 12.16 16 16 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 17 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 18 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 19 C 0.01 0.19 6.86 -81.81 -0.56 -0.37 16 20 C -0.07 -1.44 9.58 36.01 0.34 -1.10 16 21 N -0.42 -10.45 8.04 -5.42 -0.04 -10.49 16 22 C 0.36 7.15 7.51 -16.63 -0.12 7.03 16 23 O -0.25 -5.04 8.30 -18.23 -0.15 -5.19 16 24 C 0.04 0.54 10.38 101.05 1.05 1.59 16 25 N -0.59 -10.67 8.03 -13.02 -0.10 -10.77 16 26 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 27 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.15 2.19 6.26 -52.49 -0.33 1.86 16 31 H 0.10 1.95 6.21 -52.49 -0.33 1.62 16 32 H 0.13 3.13 6.27 -52.49 -0.33 2.80 16 33 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.31 6.76 -51.93 -0.35 0.96 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 0.68 8.10 -51.93 -0.42 0.25 16 39 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 331.74 15.07 5.00 5.00 Total: -1.00 -28.72 331.74 -6.55 -35.27 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.63 Total: 5.43 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.02 Total: -8.58 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.46 Total: -39.32 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.34 Total: -9.96 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.72 -6.55 -35.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241574439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.654 kcal (2) G-P(sol) polarization free energy of solvation -28.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds