Wall clock time and date at job start Fri Apr 10 2020 20:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30157 * 125.07620 * 2 1 4 4 C 1.34950 * 109.72590 * 180.17573 * 3 2 1 5 5 C 1.41799 * 126.50649 * 179.81827 * 4 3 2 6 6 O 1.21714 * 119.99836 * 179.69115 * 5 4 3 7 7 O 1.34970 * 119.99996 * 359.68760 * 5 4 3 8 8 C 1.42907 * 116.99648 * 183.04167 * 7 5 4 9 9 C 1.50701 * 112.85063 * 294.86647 * 8 7 5 10 10 H 1.08001 * 119.99445 * 118.54099 * 9 8 7 11 11 C 1.37868 * 120.00436 * 298.54231 * 9 8 7 12 12 N 1.31522 * 120.00105 * 1.82929 * 11 9 8 13 13 Si 1.86799 * 120.00248 * 181.82850 * 11 9 8 14 14 H 1.48506 * 109.47351 * 179.97438 * 13 11 9 15 15 H 1.48499 * 109.46981 * 299.99922 * 13 11 9 16 16 H 1.48497 * 109.46987 * 60.00053 * 13 11 9 17 17 C 1.53780 * 113.61354 * 66.06920 * 8 7 5 18 18 C 1.53952 * 87.01983 * 89.22536 * 17 8 7 19 19 C 1.53780 * 113.61064 * 163.67574 * 8 7 5 20 20 C 1.40253 * 106.98157 * 359.55424 * 4 3 2 21 21 C 1.40131 * 133.56945 * 180.27838 * 20 4 3 22 22 C 1.36368 * 119.20131 * 179.97438 * 21 20 4 23 23 C 1.40367 * 119.54512 * 0.02562 * 22 21 20 24 24 C 1.35052 * 120.43390 * 359.97438 * 23 22 21 25 25 N 1.36285 * 125.07890 * 179.67873 * 2 1 3 26 26 H 1.09003 * 109.47040 * 270.31723 * 1 2 3 27 27 H 1.08997 * 109.47167 * 30.32164 * 1 2 3 28 28 H 1.08994 * 109.46899 * 150.32181 * 1 2 3 29 29 H 0.97000 * 119.99283 * 354.96541 * 12 11 9 30 30 H 1.09003 * 113.61253 * 203.74351 * 17 8 7 31 31 H 1.08997 * 113.61387 * 334.64647 * 17 8 7 32 32 H 1.09000 * 113.54241 * 270.80920 * 18 17 8 33 33 H 1.09006 * 113.74087 * 139.93950 * 18 17 8 34 34 H 1.09001 * 113.61544 * 25.34435 * 19 8 7 35 35 H 1.08999 * 113.61340 * 156.17017 * 19 8 7 36 36 H 1.08000 * 120.40182 * 0.02562 * 21 20 4 37 37 H 1.07997 * 120.22364 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.78202 * 179.97438 * 23 22 21 39 39 H 1.07998 * 119.69999 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2550 1.0652 0.0000 4 6 3.5563 0.7080 -0.0039 5 6 4.6715 1.5837 -0.0088 6 8 5.8011 1.1306 -0.0063 7 8 4.4803 2.9198 -0.0162 8 6 5.6471 3.7417 -0.0884 9 6 6.5269 3.6171 1.1288 10 1 7.5386 3.2527 1.0288 11 6 6.0403 3.9684 2.3701 12 7 4.7970 4.3780 2.4972 13 14 7.1468 3.8624 3.8713 14 1 6.3907 4.2927 5.0749 15 1 7.6066 2.4617 4.0495 16 1 8.3228 4.7493 3.6830 17 6 6.4111 3.6116 -1.4166 18 6 5.5167 4.7458 -1.9495 19 6 5.3518 5.1969 -0.4885 20 6 3.5963 -0.6940 0.0040 21 6 4.6387 -1.6305 0.0095 22 6 4.3381 -2.9606 0.0174 23 6 2.9944 -3.3665 0.0193 24 6 2.0028 -2.4497 0.0139 25 7 2.2902 -1.1153 0.0063 26 1 -0.3633 0.0057 1.0277 27 1 -0.3633 0.8871 -0.5188 28 1 -0.3633 -0.8928 -0.5088 29 1 4.2447 4.5029 1.7096 30 1 7.4640 3.8838 -1.3432 31 1 6.2536 2.6574 -1.9192 32 1 4.5912 4.3931 -2.4047 33 1 6.0465 5.4669 -2.5719 34 1 4.3402 5.5205 -0.2431 35 1 6.1138 5.9034 -0.1597 36 1 5.6678 -1.3028 0.0084 37 1 5.1284 -3.6965 0.0214 38 1 2.7519 -4.4189 0.0251 39 1 0.9730 -2.7752 0.0158 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856400.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:40 Heat of formation + Delta-G solvation = 1.886166 kcal Electronic energy + Delta-G solvation = -24644.648186 eV Core-core repulsion = 21132.544922 eV Total energy + Delta-G solvation = -3512.103265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.03795 -41.41512 -39.00726 -38.51059 -36.06734 -34.72369 -34.48823 -32.63927 -31.16095 -28.65104 -27.82631 -26.59618 -25.59418 -24.91804 -24.18515 -22.22999 -21.85424 -20.32331 -19.61349 -18.60863 -17.90969 -17.46808 -17.23450 -17.05257 -16.54331 -16.48181 -15.70798 -15.62227 -15.55573 -15.20176 -14.65703 -14.42461 -14.07835 -13.92145 -13.47543 -13.26038 -13.13335 -12.83980 -12.72242 -12.66646 -12.38117 -12.29338 -12.05591 -11.94019 -11.85833 -11.74540 -11.60692 -11.35001 -10.90011 -10.56223 -10.47854 -10.10130 -8.64594 -8.57475 -6.37485 -0.49104 -0.01767 1.11971 1.33420 1.43877 1.53017 1.73010 2.20518 2.27340 2.51087 2.55793 3.18767 3.24600 3.37911 3.62573 3.68299 3.79340 3.84630 3.91241 4.04718 4.10403 4.22772 4.47268 4.55463 4.66712 4.68567 4.69070 4.78839 4.85964 4.93726 4.95207 5.04358 5.06829 5.15710 5.22126 5.35195 5.47113 5.55714 5.77323 6.07839 6.10489 6.23316 6.56570 6.62354 7.27739 7.48376 8.77331 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.015570 B = 0.005221 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.901312 B = 5362.144222 C = 5753.164483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.164 3.836 3 N -0.439 5.439 4 C -0.125 4.125 5 C 0.545 3.455 6 O -0.541 6.541 7 O -0.345 6.345 8 C 0.181 3.819 9 C -0.605 4.605 10 H 0.039 0.961 11 C -0.019 4.019 12 N -0.918 5.918 13 Si 1.108 2.892 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.259 1.259 17 C -0.143 4.143 18 C -0.120 4.120 19 C -0.109 4.109 20 C 0.091 3.909 21 C -0.131 4.131 22 C -0.063 4.063 23 C -0.130 4.130 24 C 0.059 3.941 25 N -0.362 5.362 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.267 0.733 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.133 0.867 37 H 0.180 0.820 38 H 0.210 0.790 39 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.767 -18.702 -6.885 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 N -0.155 5.155 4 C -0.253 4.253 5 C 0.393 3.607 6 O -0.433 6.433 7 O -0.261 6.261 8 C 0.146 3.854 9 C -0.643 4.643 10 H 0.057 0.943 11 C -0.221 4.221 12 N -0.554 5.554 13 Si 0.929 3.071 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.184 1.184 17 C -0.181 4.181 18 C -0.157 4.157 19 C -0.146 4.146 20 C -0.023 4.023 21 C -0.151 4.151 22 C -0.085 4.085 23 C -0.150 4.150 24 C -0.062 4.062 25 N -0.033 5.033 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.137 0.863 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.151 0.849 37 H 0.197 0.803 38 H 0.227 0.773 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -9.820 -17.656 -5.268 20.879 hybrid contribution 0.810 -0.314 -1.484 1.720 sum -9.010 -17.970 -6.753 21.206 Atomic orbital electron populations 1.20458 0.79621 1.06194 1.05249 1.24530 0.97665 0.78070 1.09252 1.70051 1.01655 1.29876 1.13893 1.18586 0.91050 0.90368 1.25253 1.18330 0.87283 0.81993 0.73094 1.90698 1.25446 1.78169 1.48940 1.86116 1.40422 1.17158 1.82419 1.20706 0.82205 0.88416 0.94101 1.22231 0.99624 1.47941 0.94500 0.94258 1.27193 0.98276 0.92526 1.04070 1.70768 1.07313 1.43538 1.33779 0.83099 0.74234 0.77105 0.72632 1.20339 1.21213 1.18368 1.23325 0.99699 0.97871 0.97173 1.22817 0.99358 0.97815 0.95696 1.22899 1.00408 0.95376 0.95950 1.19336 0.86449 0.93015 1.03530 1.20820 0.97814 0.93101 1.03330 1.21847 0.99317 0.94018 0.93322 1.21632 0.90471 1.02481 1.00389 1.22909 1.04854 0.77954 1.00529 1.43209 1.06111 1.08361 1.45577 0.88591 0.88999 0.86348 0.92230 0.89735 0.94037 0.90908 0.88695 0.93515 0.89494 0.84884 0.80273 0.77298 0.75955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 10.32 71.24 0.74 -0.26 16 2 C 0.16 5.15 7.94 137.83 1.09 6.24 16 3 N -0.44 -19.82 11.21 -178.90 -2.00 -21.82 16 4 C -0.12 -6.17 6.88 40.03 0.28 -5.89 16 5 C 0.54 31.41 7.07 68.70 0.49 31.90 16 6 O -0.54 -32.16 13.69 19.14 0.26 -31.90 16 7 O -0.35 -20.86 8.92 -58.88 -0.53 -21.39 16 8 C 0.18 10.41 0.10 -11.01 0.00 10.41 16 9 C -0.61 -38.02 7.30 25.60 0.19 -37.83 16 10 H 0.04 2.52 7.81 -2.91 -0.02 2.50 16 11 C -0.02 -1.20 5.40 84.65 0.46 -0.75 16 12 N -0.92 -60.60 13.51 21.45 0.29 -60.31 16 13 Si 1.11 55.31 29.90 68.60 2.05 57.37 16 14 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 15 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 16 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 17 C -0.14 -7.10 6.87 31.18 0.21 -6.88 16 18 C -0.12 -5.08 8.02 31.18 0.25 -4.83 16 19 C -0.11 -5.48 6.66 31.12 0.21 -5.27 16 20 C 0.09 3.50 6.70 39.25 0.26 3.76 16 21 C -0.13 -4.15 9.69 22.29 0.22 -3.93 16 22 C -0.06 -1.13 10.08 22.35 0.23 -0.90 16 23 C -0.13 -1.40 9.98 22.05 0.22 -1.18 16 24 C 0.06 0.82 10.77 83.23 0.90 1.72 16 25 N -0.36 -10.09 2.94 -337.17 -0.99 -11.08 16 26 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.12 0.93 7.98 -2.39 -0.02 0.91 16 29 H 0.27 18.05 5.76 -92.71 -0.53 17.51 16 30 H 0.08 4.04 8.09 -2.39 -0.02 4.02 16 31 H 0.04 2.10 7.29 -2.39 -0.02 2.08 16 32 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 34 H 0.05 2.41 7.77 -2.39 -0.02 2.40 16 35 H 0.09 4.30 8.09 -2.39 -0.02 4.28 16 36 H 0.13 4.86 7.11 -2.91 -0.02 4.84 16 37 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.21 -0.03 8.06 -2.91 -0.02 -0.06 16 39 H 0.22 0.59 7.93 -2.91 -0.02 0.56 16 Total: -1.00 -95.88 331.81 6.11 -89.77 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.30 Total: 13.04 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 5.73 Total: -13.69 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -2.70 Total: -93.21 kcal Atomic # 8 Polarization: -53.02 SS G_CDS: -0.26 Total: -53.29 kcal Atomic # 14 Polarization: 55.31 SS G_CDS: 2.05 Total: 57.37 kcal Total: -95.88 6.11 -89.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856400.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.659 kcal (2) G-P(sol) polarization free energy of solvation -95.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds