Wall clock time and date at job start Fri Apr 10 2020 20:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34514 * 125.79121 * 2 1 4 4 C 1.41380 * 106.84332 * 179.75107 * 3 2 1 5 5 C 1.34513 * 106.84189 * 0.37132 * 4 3 2 6 6 C 1.50692 * 125.79306 * 179.88801 * 5 4 3 7 7 H 1.09003 * 109.47375 * 359.72063 * 6 5 4 8 8 C 1.53005 * 109.47181 * 119.71526 * 6 5 4 9 9 C 1.50699 * 109.47362 * 239.71825 * 6 5 4 10 10 O 1.21264 * 120.00011 * 337.31187 * 9 6 5 11 11 N 1.34783 * 120.00173 * 157.31967 * 9 6 5 12 12 C 1.37213 * 119.99888 * 4.72064 * 11 9 6 13 13 H 1.08003 * 119.99846 * 302.47875 * 12 11 9 14 14 C 1.38898 * 120.00048 * 122.46983 * 12 11 9 15 15 N 1.31410 * 120.00018 * 161.17800 * 14 12 11 16 16 Si 1.86803 * 119.99673 * 341.17973 * 14 12 11 17 17 H 1.48500 * 109.46994 * 90.65356 * 16 14 12 18 18 H 1.48500 * 109.46892 * 210.65154 * 16 14 12 19 19 H 1.48496 * 109.47158 * 330.65416 * 16 14 12 20 20 C 1.39421 * 120.00019 * 184.72671 * 11 9 6 21 21 C 1.39067 * 119.69531 * 185.02182 * 20 11 9 22 22 C 1.38384 * 119.09833 * 179.97438 * 21 20 11 23 23 C 1.38827 * 118.48919 * 359.97438 * 22 21 20 24 24 C 1.38147 * 119.31382 * 0.02562 * 23 22 21 25 25 N 1.31879 * 120.85296 * 359.97438 * 24 23 22 26 26 O 1.34299 * 125.79249 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.46987 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46936 * 300.00411 * 1 2 3 29 29 H 1.09003 * 109.47012 * 60.00206 * 1 2 3 30 30 H 1.07999 * 126.57532 * 359.97438 * 3 2 1 31 31 H 1.08002 * 126.57855 * 180.23901 * 4 3 2 32 32 H 1.09002 * 109.47151 * 174.81650 * 8 6 5 33 33 H 1.08998 * 109.46967 * 294.81784 * 8 6 5 34 34 H 1.09004 * 109.46770 * 54.81999 * 8 6 5 35 35 H 0.96999 * 119.99840 * 180.02562 * 15 14 12 36 36 H 1.07995 * 120.45117 * 359.95145 * 21 20 11 37 37 H 1.07993 * 120.75054 * 180.02562 * 22 21 20 38 38 H 1.08001 * 120.34223 * 180.02562 * 23 22 21 39 39 H 1.07998 * 119.57154 * 180.27246 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6321 0.0059 5 6 3.5815 -0.7122 0.0008 6 6 4.7706 -1.6378 0.0018 7 1 5.6886 -1.0501 0.0023 8 6 4.7292 -2.5199 1.2512 9 6 4.7315 -2.5072 -1.2285 10 8 3.6802 -2.7002 -1.8014 11 7 5.8648 -3.0705 -1.6920 12 6 7.0361 -2.9326 -0.9907 13 1 7.4200 -1.9477 -0.7691 14 6 7.7279 -4.0595 -0.5656 15 7 8.9960 -3.9657 -0.2339 16 14 6.8556 -5.7083 -0.4654 17 1 7.0043 -6.4262 -1.7568 18 1 7.4551 -6.5200 0.6241 19 1 5.4141 -5.4894 -0.1839 20 6 5.8471 -3.7933 -2.8842 21 6 6.9938 -4.4593 -3.3031 22 6 6.9623 -5.1733 -4.4881 23 6 5.7801 -5.1971 -5.2156 24 6 4.6789 -4.5123 -4.7394 25 7 4.7386 -3.8400 -3.6064 26 8 2.2924 -1.0894 0.0005 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.9665 2.1204 -0.0004 31 1 4.5212 1.2434 0.0111 32 1 5.5364 -3.2511 1.2067 33 1 4.8502 -1.8987 2.1387 34 1 3.7716 -3.0384 1.2983 35 1 9.4792 -4.7528 0.0626 36 1 7.8967 -4.4194 -2.7120 37 1 7.8371 -5.7007 -4.8384 38 1 5.7220 -5.7454 -6.1443 39 1 3.7559 -4.5316 -5.2998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892468607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:08 Heat of formation + Delta-G solvation = 38.786892 kcal Electronic energy + Delta-G solvation = -24684.928734 eV Core-core repulsion = 21174.425605 eV Total energy + Delta-G solvation = -3510.503129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.20780 -40.12142 -38.25880 -35.21217 -33.67544 -32.77140 -32.43994 -31.49963 -30.84994 -29.33586 -26.13501 -25.42059 -24.04546 -22.61049 -21.91217 -21.33929 -20.05906 -19.19732 -18.26909 -16.58289 -16.03029 -15.89524 -15.65204 -15.38977 -14.83002 -14.39000 -14.28527 -14.06707 -13.58804 -13.22065 -13.05715 -12.92551 -12.80022 -12.73621 -12.46584 -12.38904 -12.34894 -11.81350 -11.62930 -11.55618 -11.19914 -10.98072 -10.93034 -10.61693 -10.28576 -9.63241 -9.49698 -9.26443 -9.17903 -8.76966 -8.23360 -7.85547 -7.23972 -6.71422 -4.60644 1.85234 2.05719 2.10579 2.94067 3.01573 3.12192 3.22906 3.28317 3.62619 3.91019 4.01869 4.52880 4.78443 4.91738 5.16840 5.25189 5.37273 5.44779 5.45612 5.52232 5.58404 5.71739 5.75419 5.76775 5.84513 5.95438 6.05555 6.15016 6.19567 6.32018 6.41673 6.49130 6.53857 6.70670 6.75282 6.89952 6.91644 7.15137 7.46132 7.63062 7.91653 8.01699 8.56799 8.75896 9.05760 9.48876 10.32709 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.016608 B = 0.005826 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.565459 B = 4804.527722 C = 5820.722539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.026 4.026 3 C -0.215 4.215 4 C -0.217 4.217 5 C 0.026 3.974 6 C -0.014 4.014 7 H 0.127 0.873 8 C -0.135 4.135 9 C 0.502 3.498 10 O -0.500 6.500 11 N -0.408 5.408 12 C -0.372 4.372 13 H 0.111 0.889 14 C 0.093 3.907 15 N -0.843 5.843 16 Si 0.849 3.151 17 H -0.257 1.257 18 H -0.278 1.278 19 H -0.260 1.260 20 C 0.360 3.640 21 C -0.195 4.195 22 C -0.064 4.064 23 C -0.233 4.233 24 C 0.116 3.884 25 N -0.491 5.491 26 O -0.152 6.152 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.281 0.719 36 H 0.152 0.848 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 3.141 -0.256 7.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 C -0.234 4.234 4 C -0.237 4.237 5 C -0.025 4.025 6 C -0.035 4.035 7 H 0.145 0.855 8 C -0.193 4.193 9 C 0.291 3.709 10 O -0.373 6.373 11 N -0.123 5.123 12 C -0.498 4.498 13 H 0.129 0.871 14 C -0.119 4.119 15 N -0.474 5.474 16 Si 0.673 3.327 17 H -0.181 1.181 18 H -0.203 1.203 19 H -0.184 1.184 20 C 0.130 3.870 21 C -0.218 4.218 22 C -0.090 4.090 23 C -0.255 4.255 24 C -0.043 4.043 25 N -0.206 5.206 26 O -0.048 6.048 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.170 0.830 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.349 3.173 -0.051 8.932 hybrid contribution 0.800 -1.147 -0.265 1.424 sum -7.549 2.025 -0.316 7.822 Atomic orbital electron populations 1.20218 0.85741 1.03749 1.02880 1.22356 0.93949 0.84624 1.06745 1.21403 0.92744 0.98925 1.10353 1.21480 0.98097 0.93602 1.10481 1.22031 0.82825 0.93752 1.03924 1.19739 0.93047 0.95125 0.95589 0.85482 1.21671 1.03100 0.99829 0.94684 1.20777 0.83553 0.81461 0.85155 1.90704 1.29528 1.59275 1.57813 1.41470 1.09376 1.45494 1.15916 1.18920 0.98972 0.95923 1.35996 0.87131 1.25442 0.94589 0.98571 0.93260 1.69745 1.06895 1.31750 1.39041 0.87291 0.81740 0.84112 0.79528 1.18138 1.20331 1.18357 1.19297 0.89183 0.91330 0.87196 1.21928 1.00456 1.00649 0.98814 1.21278 0.97593 0.96451 0.93704 1.21796 0.95157 1.06118 1.02424 1.22470 0.97578 0.92438 0.91806 1.67707 1.26263 1.20278 1.06386 1.84046 1.16167 1.34315 1.70226 0.90777 0.90209 0.90105 0.84026 0.83657 0.89898 0.91730 0.92689 0.90867 0.83018 0.85728 0.86080 0.83767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.42 36.01 0.38 -0.41 16 2 C -0.03 -0.42 7.32 -35.62 -0.26 -0.68 16 3 C -0.22 -3.32 10.81 -39.70 -0.43 -3.75 16 4 C -0.22 -3.71 10.78 -39.70 -0.43 -4.13 16 5 C 0.03 0.51 5.43 -35.63 -0.19 0.31 16 6 C -0.01 -0.28 2.43 -92.93 -0.23 -0.50 16 7 H 0.13 2.39 6.94 -51.93 -0.36 2.03 16 8 C -0.14 -2.51 9.09 37.16 0.34 -2.17 16 9 C 0.50 12.11 6.72 -10.98 -0.07 12.04 16 10 O -0.50 -13.27 14.07 -6.94 -0.10 -13.36 16 11 N -0.41 -10.05 2.01 -60.71 -0.12 -10.17 16 12 C -0.37 -9.07 7.06 -14.90 -0.11 -9.18 16 13 H 0.11 2.76 7.41 -52.48 -0.39 2.37 16 14 C 0.09 2.27 3.72 -17.49 -0.07 2.20 16 15 N -0.84 -21.12 13.96 55.49 0.77 -20.34 16 16 Si 0.85 19.79 25.19 -169.99 -4.28 15.50 16 17 H -0.26 -5.93 6.33 56.52 0.36 -5.57 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 20 C 0.36 8.79 6.13 -154.64 -0.95 7.84 16 21 C -0.20 -4.38 6.56 -39.22 -0.26 -4.63 16 22 C -0.06 -1.21 10.17 -39.31 -0.40 -1.61 16 23 C -0.23 -4.05 10.11 -39.40 -0.40 -4.44 16 24 C 0.12 2.26 11.18 -17.56 -0.20 2.07 16 25 N -0.49 -11.78 7.92 -12.34 -0.10 -11.88 16 26 O -0.15 -3.03 10.06 -6.80 -0.07 -3.10 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.15 2.15 8.06 -52.49 -0.42 1.73 16 32 H 0.08 1.65 7.08 -51.93 -0.37 1.28 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 36 H 0.15 3.56 5.12 -52.49 -0.27 3.29 16 37 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 38 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.15 2.33 8.06 -52.49 -0.42 1.90 16 LS Contribution 327.52 15.07 4.94 4.94 Total: -1.00 -30.77 327.52 -7.02 -37.79 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.79 Total: 7.68 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -3.27 Total: -7.06 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.55 Total: -42.39 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.17 Total: -16.47 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.28 Total: 15.50 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.77 -7.02 -37.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892468607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.578 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds