Wall clock time and date at job start Fri Apr 10 2020 20:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47462 * 2 1 4 4 O 1.42907 * 109.47498 * 240.00027 * 2 1 3 5 5 C 1.50705 * 109.47190 * 119.99962 * 2 1 3 6 6 C 1.38343 * 119.93530 * 329.98113 * 5 2 1 7 7 C 1.38300 * 120.23757 * 179.97438 * 6 5 2 8 8 C 1.38040 * 120.12504 * 359.76685 * 7 6 5 9 9 C 1.39321 * 119.87306 * 0.50697 * 8 7 6 10 10 C 1.48393 * 120.11754 * 179.74678 * 9 8 7 11 11 C 1.39813 * 119.96399 * 179.74743 * 10 9 8 12 12 C 1.38238 * 120.42425 * 179.97438 * 11 10 9 13 13 C 1.38073 * 120.34491 * 0.02562 * 12 11 10 14 14 F 1.35104 * 120.03846 * 179.97438 * 13 12 11 15 15 C 1.41034 * 119.91638 * 359.68291 * 13 12 11 16 16 C 1.41318 * 120.20566 * 180.29874 * 15 13 12 17 17 H 1.08004 * 120.00169 * 24.89336 * 16 15 13 18 18 C 1.39927 * 119.99891 * 204.89480 * 16 15 13 19 19 N 1.30848 * 119.99889 * 17.81577 * 18 16 15 20 20 Si 1.86796 * 119.99751 * 197.81400 * 18 16 15 21 21 H 1.48501 * 109.47424 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47304 * 120.00272 * 20 18 16 23 23 H 1.48500 * 109.47266 * 240.00004 * 20 18 16 24 24 C 1.38675 * 119.96811 * 359.72205 * 10 9 8 25 25 C 1.38001 * 119.93749 * 150.00086 * 5 2 1 26 26 H 1.08990 * 109.47412 * 300.00182 * 1 2 3 27 27 H 1.09000 * 109.46993 * 60.00002 * 1 2 3 28 28 H 1.08994 * 109.46887 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47534 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47007 * 300.00485 * 3 2 1 31 31 H 1.08999 * 109.46704 * 59.99487 * 3 2 1 32 32 H 0.96695 * 113.99723 * 300.00637 * 4 2 1 33 33 H 1.07998 * 119.87896 * 0.02562 * 6 5 2 34 34 H 1.08008 * 119.93483 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.06257 * 180.27505 * 8 7 6 36 36 H 1.08002 * 119.78918 * 359.95617 * 11 10 9 37 37 H 1.08001 * 119.82996 * 180.02562 * 12 11 10 38 38 H 0.97006 * 119.99847 * 180.02562 * 19 18 16 39 39 H 1.08006 * 120.16766 * 0.03306 * 24 10 9 40 40 H 1.07993 * 120.06022 * 359.95954 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0323 -0.7104 1.2305 6 6 1.2838 -0.6894 2.3937 7 6 1.7386 -1.3397 3.5264 8 6 2.9407 -2.0177 3.5004 9 6 3.7013 -2.0372 2.3333 10 6 4.9971 -2.7596 2.3010 11 6 5.7553 -2.7815 1.1264 12 6 6.9640 -3.4511 1.0859 13 6 7.4362 -4.1067 2.2055 14 9 8.6180 -4.7597 2.1588 15 6 6.6861 -4.0888 3.3998 16 6 7.1667 -4.7524 4.5512 17 1 8.2262 -4.9219 4.6741 18 6 6.2697 -5.1899 5.5320 19 7 4.9977 -5.3088 5.2491 20 14 6.8883 -5.6044 7.2451 21 1 8.3562 -5.3887 7.3071 22 1 6.2164 -4.7294 8.2392 23 1 6.5840 -7.0254 7.5510 24 6 5.4551 -3.4118 3.4359 25 6 3.2383 -1.3803 1.1949 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.7210 -1.5952 -1.2330 33 1 0.3405 -0.1641 2.4171 34 1 1.1500 -1.3205 4.4318 35 1 3.2928 -2.5289 4.3842 36 1 5.3941 -2.2723 0.2451 37 1 7.5420 -3.4615 0.1736 38 1 4.3758 -5.6117 5.9291 39 1 4.8707 -3.3960 4.3440 40 1 3.8216 -1.3962 0.2862 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240407381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:46 Heat of formation + Delta-G solvation = -68.554617 kcal Electronic energy + Delta-G solvation = -23545.372904 eV Core-core repulsion = 20010.295136 eV Total energy + Delta-G solvation = -3535.077768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.127 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.28637 -39.75099 -37.83024 -36.58780 -33.96258 -32.84509 -31.30301 -30.12478 -29.63822 -27.84714 -27.15068 -25.49605 -23.17358 -22.42994 -21.27955 -20.47250 -19.35939 -17.69942 -16.95069 -16.41694 -15.86904 -15.33416 -15.13141 -14.75143 -14.53106 -14.33485 -14.05673 -13.83353 -13.44068 -13.08839 -12.79984 -12.67620 -12.47693 -12.26269 -12.15939 -11.92702 -11.85173 -11.71563 -11.44162 -11.38067 -11.14464 -11.01156 -10.78033 -10.59996 -10.49648 -10.11773 -9.85513 -9.49799 -9.37436 -8.71012 -8.44619 -7.69020 -7.06717 -6.84481 -4.50942 1.43183 1.74426 2.63202 2.80171 3.00986 3.06516 3.09536 3.83650 4.11355 4.19232 4.56259 4.66996 4.85952 5.02922 5.26768 5.30371 5.41883 5.49197 5.54590 5.64898 5.71565 5.75177 5.84059 5.90426 5.94044 6.02911 6.04837 6.16817 6.27655 6.34421 6.51697 6.75857 6.80696 6.83693 6.88826 7.04309 7.19640 7.29501 7.47685 7.49363 7.65590 7.81997 7.85183 7.99082 8.40560 8.62952 8.71375 10.01336 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.018732 B = 0.004140 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.394143 B = 6761.019979 C = 7992.245441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.171 3.829 3 C -0.134 4.134 4 O -0.557 6.557 5 C -0.124 4.124 6 C -0.132 4.132 7 C -0.121 4.121 8 C -0.111 4.111 9 C -0.010 4.010 10 C -0.058 4.058 11 C -0.201 4.201 12 C -0.123 4.123 13 C -0.024 4.024 14 F -0.162 7.162 15 C 0.082 3.918 16 C -0.453 4.453 17 H 0.084 0.916 18 C 0.077 3.923 19 N -0.789 5.789 20 Si 0.911 3.089 21 H -0.258 1.258 22 H -0.270 1.270 23 H -0.273 1.273 24 C -0.123 4.123 25 C -0.104 4.104 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.378 0.622 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.283 0.717 39 H 0.133 0.867 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.580 8.295 -4.104 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.131 3.869 3 C -0.191 4.191 4 O -0.363 6.363 5 C -0.124 4.124 6 C -0.150 4.150 7 C -0.139 4.139 8 C -0.129 4.129 9 C -0.010 4.010 10 C -0.058 4.058 11 C -0.220 4.220 12 C -0.142 4.142 13 C -0.044 4.044 14 F -0.142 7.142 15 C 0.079 3.921 16 C -0.481 4.481 17 H 0.102 0.898 18 C -0.142 4.142 19 N -0.414 5.414 20 Si 0.735 3.265 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.143 4.143 25 C -0.122 4.122 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.225 0.775 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.151 0.849 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.486 8.768 -4.108 13.555 hybrid contribution 0.095 -1.016 0.940 1.387 sum -9.392 7.753 -3.168 12.583 Atomic orbital electron populations 1.22526 0.95579 1.02638 1.02539 1.19931 0.92130 0.92338 0.82528 1.21732 1.02390 0.92930 1.02015 1.86518 1.77407 1.29145 1.43218 1.20296 0.96002 1.00406 0.95739 1.20923 0.99681 1.01440 0.92936 1.21006 0.96533 0.98420 0.97952 1.21451 0.94313 0.98658 0.98486 1.19063 0.93935 0.95163 0.92869 1.18507 0.92819 0.99460 0.95008 1.20251 0.96485 1.07899 0.97411 1.20432 0.97253 1.00106 0.96447 1.17958 0.86114 1.04897 0.95431 1.91276 1.45460 1.80315 1.97108 1.17551 0.91784 0.91885 0.90872 1.19557 0.95349 1.31697 1.01536 0.89753 1.25913 0.94403 0.93041 1.00826 1.69817 1.03725 1.32905 1.34985 0.86193 0.80629 0.78719 0.80924 1.18188 1.19486 1.19777 1.21348 0.97511 0.98005 0.97389 1.21078 0.95278 0.97353 0.98491 0.91298 0.91859 0.92105 0.91621 0.91958 0.91204 0.77456 0.86620 0.86520 0.85261 0.87918 0.87868 0.90573 0.84950 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 8.12 37.16 0.30 -1.37 16 2 C 0.17 2.03 1.23 -91.77 -0.11 1.92 16 3 C -0.13 -1.48 8.83 37.16 0.33 -1.16 16 4 O -0.56 -6.97 11.96 -35.23 -0.42 -7.40 16 5 C -0.12 -1.77 4.80 -104.67 -0.50 -2.27 16 6 C -0.13 -1.79 9.14 -39.52 -0.36 -2.15 16 7 C -0.12 -1.81 10.03 -39.63 -0.40 -2.21 16 8 C -0.11 -2.01 9.42 -39.25 -0.37 -2.38 16 9 C -0.01 -0.20 5.88 -104.90 -0.62 -0.82 16 10 C -0.06 -1.29 5.87 -104.97 -0.62 -1.91 16 11 C -0.20 -4.35 9.43 -38.99 -0.37 -4.72 16 12 C -0.12 -2.79 9.99 -39.64 -0.40 -3.19 16 13 C -0.02 -0.60 7.31 -38.58 -0.28 -0.88 16 14 F -0.16 -4.11 16.70 2.25 0.04 -4.07 16 15 C 0.08 2.17 5.58 -106.80 -0.60 1.58 16 16 C -0.45 -11.93 8.77 -37.78 -0.33 -12.26 16 17 H 0.08 2.21 7.74 -52.48 -0.41 1.81 16 18 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 19 N -0.79 -19.39 10.96 55.55 0.61 -18.79 16 20 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 24 C -0.12 -3.05 8.06 -38.55 -0.31 -3.36 16 25 C -0.10 -1.76 8.72 -39.25 -0.34 -2.10 16 26 H 0.07 0.59 6.50 -51.93 -0.34 0.25 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.38 3.78 9.04 45.56 0.41 4.19 16 33 H 0.12 1.26 6.15 -52.49 -0.32 0.94 16 34 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.13 2.45 6.19 -52.49 -0.33 2.13 16 36 H 0.10 1.96 6.18 -52.49 -0.32 1.63 16 37 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 38 H 0.28 6.26 8.30 -40.82 -0.34 5.93 16 39 H 0.13 3.28 4.29 -52.48 -0.23 3.05 16 40 H 0.13 2.15 5.61 -52.49 -0.29 1.85 16 LS Contribution 333.68 15.07 5.03 5.03 Total: -1.00 -27.81 333.68 -8.76 -36.56 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -3.92 Total: 11.01 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: -5.06 Total: -35.50 kcal Atomic # 7 Polarization: -19.39 SS G_CDS: 0.61 Total: -18.79 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.42 Total: -7.40 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.04 Total: -4.07 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.81 -8.76 -36.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.990 kcal (2) G-P(sol) polarization free energy of solvation -27.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds