Wall clock time and date at job start Fri Apr 10 2020 20:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47462 * 2 1 4 4 O 1.42907 * 109.47498 * 240.00027 * 2 1 3 5 5 C 1.50705 * 109.47190 * 119.99962 * 2 1 3 6 6 C 1.38343 * 119.93530 * 329.98113 * 5 2 1 7 7 C 1.38300 * 120.23757 * 179.97438 * 6 5 2 8 8 C 1.38040 * 120.12504 * 359.76685 * 7 6 5 9 9 C 1.39321 * 119.87306 * 0.50697 * 8 7 6 10 10 C 1.48393 * 120.11754 * 179.74678 * 9 8 7 11 11 C 1.39813 * 119.96399 * 179.74743 * 10 9 8 12 12 C 1.38238 * 120.42425 * 179.97438 * 11 10 9 13 13 C 1.38073 * 120.34491 * 0.02562 * 12 11 10 14 14 F 1.35104 * 120.03846 * 179.97438 * 13 12 11 15 15 C 1.41034 * 119.91638 * 359.68291 * 13 12 11 16 16 C 1.41318 * 120.20566 * 180.29874 * 15 13 12 17 17 H 1.08004 * 120.00169 * 24.89336 * 16 15 13 18 18 C 1.39927 * 119.99891 * 204.89480 * 16 15 13 19 19 N 1.30848 * 119.99889 * 17.81577 * 18 16 15 20 20 Si 1.86796 * 119.99751 * 197.81400 * 18 16 15 21 21 H 1.48501 * 109.47424 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47304 * 120.00272 * 20 18 16 23 23 H 1.48500 * 109.47266 * 240.00004 * 20 18 16 24 24 C 1.38675 * 119.96811 * 359.72205 * 10 9 8 25 25 C 1.38001 * 119.93749 * 150.00086 * 5 2 1 26 26 H 1.08990 * 109.47412 * 300.00182 * 1 2 3 27 27 H 1.09000 * 109.46993 * 60.00002 * 1 2 3 28 28 H 1.08994 * 109.46887 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47534 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47007 * 300.00485 * 3 2 1 31 31 H 1.08999 * 109.46704 * 59.99487 * 3 2 1 32 32 H 0.96695 * 113.99723 * 300.00637 * 4 2 1 33 33 H 1.07998 * 119.87896 * 0.02562 * 6 5 2 34 34 H 1.08008 * 119.93483 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.06257 * 180.27505 * 8 7 6 36 36 H 1.08002 * 119.78918 * 359.95617 * 11 10 9 37 37 H 1.08001 * 119.82996 * 180.02562 * 12 11 10 38 38 H 0.97006 * 119.99847 * 180.02562 * 19 18 16 39 39 H 1.08006 * 120.16766 * 0.03306 * 24 10 9 40 40 H 1.07993 * 120.06022 * 359.95954 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0323 -0.7104 1.2305 6 6 1.2838 -0.6894 2.3937 7 6 1.7386 -1.3397 3.5264 8 6 2.9407 -2.0177 3.5004 9 6 3.7013 -2.0372 2.3333 10 6 4.9971 -2.7596 2.3010 11 6 5.7553 -2.7815 1.1264 12 6 6.9640 -3.4511 1.0859 13 6 7.4362 -4.1067 2.2055 14 9 8.6180 -4.7597 2.1588 15 6 6.6861 -4.0888 3.3998 16 6 7.1667 -4.7524 4.5512 17 1 8.2262 -4.9219 4.6741 18 6 6.2697 -5.1899 5.5320 19 7 4.9977 -5.3088 5.2491 20 14 6.8883 -5.6044 7.2451 21 1 8.3562 -5.3887 7.3071 22 1 6.2164 -4.7294 8.2392 23 1 6.5840 -7.0254 7.5510 24 6 5.4551 -3.4118 3.4359 25 6 3.2383 -1.3803 1.1949 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.7210 -1.5952 -1.2330 33 1 0.3405 -0.1641 2.4171 34 1 1.1500 -1.3205 4.4318 35 1 3.2928 -2.5289 4.3842 36 1 5.3941 -2.2723 0.2451 37 1 7.5420 -3.4615 0.1736 38 1 4.3758 -5.6117 5.9291 39 1 4.8707 -3.3960 4.3440 40 1 3.8216 -1.3962 0.2862 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240407381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:45 Heat of formation + Delta-G solvation = -82.795814 kcal Electronic energy + Delta-G solvation = -23545.990449 eV Core-core repulsion = 20010.295136 eV Total energy + Delta-G solvation = -3535.695313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.24578 -40.95761 -39.33809 -37.88851 -35.77133 -33.96867 -32.70178 -31.76481 -31.04395 -29.19552 -28.11482 -27.34179 -24.51203 -23.88979 -22.81028 -21.97787 -20.65740 -19.32181 -18.38391 -18.02618 -17.30654 -16.95765 -16.63230 -16.03800 -15.94560 -15.82426 -15.61205 -15.12259 -14.78078 -14.67940 -14.37799 -13.99538 -13.78422 -13.46608 -13.37979 -13.22744 -13.14568 -13.03683 -12.84190 -12.72609 -12.56681 -12.48578 -12.19902 -12.13779 -11.76481 -11.63902 -11.27129 -11.14898 -10.91287 -10.21574 -9.68138 -9.57307 -8.83532 -8.58474 -6.47124 -0.03061 0.48917 0.85090 1.12282 1.35134 1.46898 1.50690 2.16542 2.53835 2.96868 3.33406 3.55101 3.64993 3.86183 3.95230 4.01789 4.17765 4.20341 4.30247 4.35565 4.51216 4.58195 4.67051 4.79138 4.84044 4.90843 4.93945 4.99613 5.08294 5.10305 5.17986 5.25947 5.27510 5.35939 5.46489 5.56830 5.65459 5.68147 5.69018 5.95569 6.03615 6.13852 6.15846 6.50005 6.72227 6.81391 6.83438 8.21379 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.018732 B = 0.004140 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.394143 B = 6761.019979 C = 7992.245441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.170 3.830 3 C -0.136 4.136 4 O -0.571 6.571 5 C -0.118 4.118 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.129 4.129 9 C -0.045 4.045 10 C -0.054 4.054 11 C -0.199 4.199 12 C -0.120 4.120 13 C -0.063 4.063 14 F -0.170 7.170 15 C 0.055 3.945 16 C -0.495 4.495 17 H 0.070 0.930 18 C 0.042 3.958 19 N -0.813 5.813 20 Si 0.983 3.017 21 H -0.264 1.264 22 H -0.256 1.256 23 H -0.262 1.262 24 C -0.147 4.147 25 C -0.106 4.106 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.387 0.613 33 H 0.156 0.844 34 H 0.145 0.855 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.294 0.706 39 H 0.125 0.875 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.460 10.013 -4.414 16.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.129 3.871 3 C -0.193 4.193 4 O -0.379 6.379 5 C -0.118 4.118 6 C -0.132 4.132 7 C -0.136 4.136 8 C -0.147 4.147 9 C -0.045 4.045 10 C -0.054 4.054 11 C -0.218 4.218 12 C -0.139 4.139 13 C -0.083 4.083 14 F -0.149 7.149 15 C 0.052 3.948 16 C -0.523 4.523 17 H 0.088 0.912 18 C -0.175 4.175 19 N -0.438 5.438 20 Si 0.803 3.197 21 H -0.187 1.187 22 H -0.180 1.180 23 H -0.186 1.186 24 C -0.166 4.166 25 C -0.124 4.124 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.236 0.764 33 H 0.173 0.827 34 H 0.163 0.837 35 H 0.126 0.874 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.105 0.895 39 H 0.143 0.857 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.376 10.486 -4.441 16.818 hybrid contribution 0.831 -1.434 0.906 1.889 sum -11.546 9.051 -3.536 15.091 Atomic orbital electron populations 1.22494 0.93176 1.03264 1.03903 1.20087 0.93838 0.92124 0.81016 1.21789 1.01297 0.92777 1.03459 1.86505 1.77910 1.30052 1.43384 1.20648 0.94733 0.99142 0.97268 1.21376 1.00482 0.99655 0.91645 1.21313 0.95271 0.97285 0.99747 1.21430 0.95899 0.99850 0.97493 1.19012 0.93422 0.97398 0.94712 1.18898 0.94102 0.98095 0.94312 1.20629 0.95860 1.07158 0.98160 1.20757 0.97654 0.98943 0.96520 1.18291 0.86587 1.06908 0.96475 1.91233 1.45813 1.80701 1.97189 1.17929 0.92856 0.92487 0.91531 1.19701 0.95171 1.34065 1.03382 0.91175 1.26702 0.94353 0.92268 1.04146 1.69841 1.04661 1.32809 1.36521 0.85142 0.79628 0.79047 0.75863 1.18735 1.17961 1.18642 1.21341 0.97472 0.99525 0.98302 1.21085 0.96419 0.97480 0.97378 0.89730 0.90787 0.91855 0.93449 0.90669 0.89700 0.76380 0.82667 0.83747 0.87383 0.84970 0.85106 0.89523 0.85736 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 8.12 71.98 0.58 -1.86 16 2 C 0.17 3.43 1.23 -11.54 -0.01 3.41 16 3 C -0.14 -2.58 8.83 71.98 0.64 -1.94 16 4 O -0.57 -12.77 11.96 -148.98 -1.78 -14.55 16 5 C -0.12 -2.99 4.80 -19.89 -0.10 -3.09 16 6 C -0.11 -2.63 9.14 22.31 0.20 -2.43 16 7 C -0.12 -3.24 10.03 22.24 0.22 -3.02 16 8 C -0.13 -4.67 9.42 22.48 0.21 -4.46 16 9 C -0.05 -1.77 5.88 -20.04 -0.12 -1.89 16 10 C -0.05 -2.48 5.87 -20.09 -0.12 -2.60 16 11 C -0.20 -8.66 9.43 22.65 0.21 -8.44 16 12 C -0.12 -5.52 9.99 22.23 0.22 -5.29 16 13 C -0.06 -3.33 7.31 22.92 0.17 -3.17 16 14 F -0.17 -9.06 16.70 44.97 0.75 -8.31 16 15 C 0.05 3.08 5.58 -21.28 -0.12 2.96 16 16 C -0.49 -27.70 8.77 23.44 0.21 -27.49 16 17 H 0.07 3.96 7.74 -2.91 -0.02 3.93 16 18 C 0.04 2.10 5.14 85.25 0.44 2.54 16 19 N -0.81 -41.42 10.96 21.82 0.24 -41.18 16 20 Si 0.98 38.15 29.59 68.60 2.03 40.18 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 23 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 24 C -0.15 -7.69 8.06 22.93 0.18 -7.51 16 25 C -0.11 -3.43 8.72 22.48 0.20 -3.23 16 26 H 0.08 0.95 6.50 -2.39 -0.02 0.93 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.39 6.80 9.04 -74.06 -0.67 6.13 16 33 H 0.16 2.42 6.15 -2.91 -0.02 2.40 16 34 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.11 4.31 6.19 -2.91 -0.02 4.29 16 36 H 0.13 4.88 6.18 -2.91 -0.02 4.86 16 37 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 38 H 0.29 13.27 8.30 -92.70 -0.77 12.50 16 39 H 0.13 6.58 4.29 -2.91 -0.01 6.56 16 40 H 0.13 4.07 5.61 -2.91 -0.02 4.05 16 Total: -1.00 -63.90 333.68 4.68 -59.22 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.42 Total: 32.14 kcal Atomic # 6 Polarization: -70.53 SS G_CDS: 3.02 Total: -67.51 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.24 Total: -41.18 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -1.78 Total: -14.55 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 0.75 Total: -8.31 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -63.90 4.68 -59.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.577 kcal (2) G-P(sol) polarization free energy of solvation -63.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds