Wall clock time and date at job start Fri Apr 10 2020 20:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.34304 * 125.79222 * 2 1 4 4 C 1.34304 * 109.47794 * 179.78914 * 3 2 1 5 5 C 1.34519 * 108.42154 * 0.37696 * 4 3 2 6 6 C 1.34521 * 125.78709 * 180.02562 * 2 1 3 7 7 C 1.50692 * 126.58092 * 0.02562 * 6 2 1 8 8 N 1.46503 * 109.46807 * 79.98367 * 7 6 2 9 9 C 1.34780 * 119.99900 * 179.97438 * 8 7 6 10 10 O 1.21588 * 120.00202 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00174 * 179.97438 * 9 8 7 12 12 C 1.39953 * 120.00182 * 174.85016 * 11 9 8 13 13 C 1.39286 * 119.94889 * 145.76765 * 12 11 9 14 14 C 1.38491 * 120.43063 * 180.02562 * 13 12 11 15 15 C 1.37680 * 120.31932 * 359.97438 * 14 13 12 16 16 C 1.40734 * 119.88837 * 0.02562 * 15 14 13 17 17 C 1.41405 * 120.21484 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00251 * 205.17700 * 17 16 15 19 19 C 1.39927 * 120.00040 * 25.16591 * 17 16 15 20 20 N 1.30838 * 120.00000 * 16.80160 * 19 17 16 21 21 Si 1.86800 * 120.00213 * 196.80060 * 19 17 16 22 22 H 1.48492 * 109.47106 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47123 * 120.00463 * 21 19 17 24 24 H 1.48500 * 109.46996 * 239.99940 * 21 19 17 25 25 C 1.38241 * 119.94674 * 325.49842 * 12 11 9 26 26 H 1.08992 * 109.47537 * 269.97744 * 1 2 3 27 27 H 1.09004 * 109.46762 * 29.97873 * 1 2 3 28 28 H 1.09004 * 109.47531 * 149.97704 * 1 2 3 29 29 H 1.08002 * 125.79014 * 180.23962 * 4 3 2 30 30 H 1.07993 * 126.57995 * 179.89737 * 5 4 3 31 31 H 1.08995 * 109.47441 * 199.98577 * 7 6 2 32 32 H 1.09004 * 109.47177 * 319.98605 * 7 6 2 33 33 H 0.97001 * 120.00280 * 0.02562 * 8 7 6 34 34 H 0.97005 * 119.99666 * 354.85857 * 11 9 8 35 35 H 1.08006 * 119.78305 * 0.02562 * 13 12 11 36 36 H 1.07996 * 119.83471 * 180.02562 * 14 13 12 37 37 H 1.07997 * 120.05088 * 179.97438 * 15 14 13 38 38 H 0.96991 * 120.00061 * 180.02562 * 20 19 17 39 39 H 1.08002 * 120.15665 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5814 0.7121 0.0047 5 6 3.6308 -0.6321 -0.0007 6 6 2.2936 -1.0912 -0.0005 7 6 1.8371 -2.5274 -0.0017 8 7 1.4608 -2.9190 -1.3623 9 6 1.0191 -4.1688 -1.6060 10 8 0.9326 -4.9712 -0.6966 11 7 0.6724 -4.5290 -2.8576 12 6 0.3171 -5.8547 -3.1313 13 6 -0.6583 -6.1301 -4.0867 14 6 -1.0180 -7.4382 -4.3650 15 6 -0.4143 -8.4816 -3.6998 16 6 0.5729 -8.2187 -2.7319 17 6 1.1971 -9.2850 -2.0442 18 1 1.6243 -9.1203 -1.0661 19 6 1.2611 -10.5537 -2.6309 20 7 1.0530 -10.6918 -3.9152 21 14 1.6435 -12.0503 -1.5805 22 1 1.8358 -11.6288 -0.1697 23 1 0.5148 -13.0122 -1.6599 24 1 2.8831 -12.6999 -2.0770 25 6 0.9387 -6.8890 -2.4568 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 4.4336 1.3755 0.0094 30 1 4.5211 -1.2434 -0.0005 31 1 2.6473 -3.1664 0.3494 32 1 0.9767 -2.6357 0.6587 33 1 1.5301 -2.2790 -2.0879 34 1 0.6693 -3.8693 -3.5688 35 1 -1.1372 -5.3182 -4.6139 36 1 -1.7752 -7.6408 -5.1079 37 1 -0.6984 -9.5000 -3.9200 38 1 1.0970 -11.5713 -4.3218 39 1 1.6979 -6.6766 -1.7187 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466577708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:09 Heat of formation + Delta-G solvation = 5.630663 kcal Electronic energy + Delta-G solvation = -22880.230610 eV Core-core repulsion = 19368.289718 eV Total energy + Delta-G solvation = -3511.940891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.88270 -39.83655 -37.37355 -35.49070 -34.30934 -33.12774 -32.61103 -32.11436 -29.75381 -28.52543 -27.21810 -25.46399 -25.16816 -21.79799 -21.62098 -20.80123 -20.16543 -19.85706 -18.06173 -17.69159 -16.96674 -16.45274 -15.71250 -15.42795 -15.08303 -14.65061 -14.58582 -14.28089 -13.86794 -13.83371 -13.26269 -13.07471 -12.99708 -12.86282 -12.69308 -12.32941 -12.07223 -11.81228 -11.59103 -11.13696 -11.07398 -10.86230 -10.40496 -10.22307 -10.04813 -9.64159 -9.43950 -9.07733 -8.96465 -8.85687 -8.63568 -7.38074 -6.82891 -6.64722 -4.27430 1.41261 2.17597 2.72594 2.79160 2.96278 3.13559 3.20641 3.24781 3.28426 3.77582 4.01513 4.44226 4.56345 4.66628 4.69118 4.71658 5.01109 5.18892 5.35073 5.42706 5.53500 5.65789 5.78817 5.83864 5.98822 6.24333 6.29539 6.45768 6.59630 6.84188 6.86046 6.87581 7.10627 7.15595 7.30769 7.41849 7.75364 7.89849 8.06083 8.17642 8.31342 8.50264 8.73130 8.96508 9.03987 9.11154 10.27518 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.002865 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.443941 B = 9770.124410 C =10514.080295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.009 3.991 3 O -0.176 6.176 4 C -0.048 4.048 5 C -0.193 4.193 6 C -0.198 4.198 7 C 0.212 3.788 8 N -0.748 5.748 9 C 0.698 3.302 10 O -0.566 6.566 11 N -0.682 5.682 12 C 0.169 3.831 13 C -0.263 4.263 14 C -0.092 4.092 15 C -0.174 4.174 16 C 0.120 3.880 17 C -0.458 4.458 18 H 0.078 0.922 19 C 0.075 3.925 20 N -0.797 5.797 21 Si 0.907 3.093 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.209 4.209 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.203 0.797 30 H 0.150 0.850 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.392 0.608 34 H 0.393 0.607 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.278 0.722 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.052 19.517 3.956 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.042 4.042 3 O -0.073 6.073 4 C -0.115 4.115 5 C -0.213 4.213 6 C -0.200 4.200 7 C 0.089 3.911 8 N -0.405 5.405 9 C 0.398 3.602 10 O -0.442 6.442 11 N -0.328 5.328 12 C 0.077 3.923 13 C -0.285 4.285 14 C -0.111 4.111 15 C -0.194 4.194 16 C 0.117 3.883 17 C -0.487 4.487 18 H 0.096 0.904 19 C -0.142 4.142 20 N -0.422 5.422 21 Si 0.732 3.268 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.201 1.201 25 C -0.231 4.231 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.220 0.780 30 H 0.168 0.832 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.226 0.774 34 H 0.227 0.773 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.901 18.889 4.663 19.549 hybrid contribution 0.572 -0.120 -0.392 0.703 sum 2.473 18.770 4.271 19.408 Atomic orbital electron populations 1.20392 0.84857 1.04366 1.03921 1.22404 0.94038 0.83791 1.03978 1.84029 1.16972 1.34809 1.71453 1.23966 0.84189 0.95982 1.07404 1.21786 0.97739 0.94751 1.06984 1.20259 0.93200 0.95533 1.11023 1.19264 1.00122 0.88562 0.83198 1.45207 1.72283 1.12564 1.10496 1.15966 0.78619 0.81997 0.83581 1.90983 1.59164 1.50560 1.43457 1.42588 1.70981 1.10724 1.08495 1.17224 0.95947 0.80671 0.98439 1.20007 1.04896 0.96084 1.07503 1.20439 0.99094 0.92498 0.99084 1.21331 0.98858 0.98116 1.01059 1.17491 0.89416 0.91085 0.90304 1.19611 1.32673 0.92911 1.03552 0.90359 1.25897 0.92944 1.00559 0.94759 1.69841 1.36589 1.25265 1.10546 0.86281 0.78527 0.80678 0.81358 1.18364 1.19761 1.20092 1.21006 1.04242 0.91620 1.06204 0.89751 0.90411 0.88934 0.78032 0.83185 0.90710 0.90880 0.77435 0.77325 0.89409 0.89103 0.86365 0.91085 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.20 36.00 0.37 -0.21 16 2 C 0.01 0.09 7.32 -35.63 -0.26 -0.17 16 3 O -0.18 -1.73 10.65 5.70 0.06 -1.67 16 4 C -0.05 -0.40 12.09 29.42 0.36 -0.04 16 5 C -0.19 -1.83 10.87 -39.70 -0.43 -2.26 16 6 C -0.20 -2.09 5.53 -104.74 -0.58 -2.67 16 7 C 0.21 2.64 5.69 -5.20 -0.03 2.61 16 8 N -0.75 -9.94 5.55 -66.42 -0.37 -10.31 16 9 C 0.70 12.90 8.29 -86.92 -0.72 12.18 16 10 O -0.57 -13.20 14.10 5.29 0.07 -13.13 16 11 N -0.68 -12.47 5.34 -14.27 -0.08 -12.55 16 12 C 0.17 3.93 6.25 -83.76 -0.52 3.41 16 13 C -0.26 -5.90 9.97 -39.10 -0.39 -6.29 16 14 C -0.09 -2.19 10.02 -39.69 -0.40 -2.59 16 15 C -0.17 -4.65 8.69 -38.84 -0.34 -4.99 16 16 C 0.12 3.37 5.57 -106.85 -0.59 2.78 16 17 C -0.46 -12.82 9.05 -37.75 -0.34 -13.16 16 18 H 0.08 2.17 7.90 -52.49 -0.41 1.76 16 19 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 20 N -0.80 -21.07 10.94 55.55 0.61 -20.46 16 21 Si 0.91 19.41 29.59 -169.99 -5.03 14.38 16 22 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 C -0.21 -5.56 8.39 -38.68 -0.32 -5.89 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.72 7.87 -51.93 -0.41 0.31 16 29 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 33 H 0.39 4.17 8.48 -40.82 -0.35 3.82 16 34 H 0.39 5.57 8.84 -40.82 -0.36 5.21 16 35 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 36 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.12 3.24 6.17 -52.49 -0.32 2.91 16 38 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 39 H 0.11 2.94 6.48 -52.49 -0.34 2.60 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -32.99 339.40 -8.63 -41.62 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -4.71 Total: 12.42 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -4.30 Total: -15.42 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.16 Total: -43.32 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.14 Total: -14.80 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.99 -8.63 -41.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466577708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.247 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds