Wall clock time and date at job start Fri Apr 10 2020 20:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46858 * 2 1 4 4 C 1.35868 * 116.99978 * 180.02562 * 3 2 1 5 5 C 1.38588 * 120.07557 * 0.23145 * 4 3 2 6 6 C 1.38129 * 120.12981 * 180.28371 * 5 4 3 7 7 C 1.38865 * 120.26746 * 359.73792 * 6 5 4 8 8 O 1.35989 * 119.92481 * 179.97438 * 7 6 5 9 9 C 1.42893 * 117.00073 * 0.02562 * 8 7 6 10 10 C 1.38377 * 120.14495 * 0.02562 * 7 6 5 11 11 C 1.39404 * 119.87125 * 359.97438 * 10 7 6 12 12 C 1.48176 * 120.13016 * 179.97438 * 11 10 7 13 13 C 1.40109 * 119.98749 * 132.07526 * 12 11 10 14 14 N 1.32161 * 120.28489 * 180.02562 * 13 12 11 15 15 C 1.31897 * 120.29193 * 359.69928 * 14 13 12 16 16 C 1.40816 * 119.97802 * 0.57321 * 15 14 13 17 17 C 1.41311 * 120.13930 * 179.70537 * 16 15 14 18 18 H 1.08003 * 120.00515 * 6.23587 * 17 16 15 19 19 C 1.40048 * 119.99631 * 186.23976 * 17 16 15 20 20 N 1.30736 * 119.99816 * 184.68118 * 19 17 16 21 21 Si 1.86794 * 120.00031 * 4.68027 * 19 17 16 22 22 H 1.48505 * 109.46987 * 180.02562 * 21 19 17 23 23 H 1.48506 * 109.46990 * 299.99830 * 21 19 17 24 24 H 1.48499 * 109.47591 * 60.00010 * 21 19 17 25 25 N 1.32561 * 119.99312 * 312.09041 * 12 11 10 26 26 H 1.09000 * 109.47664 * 59.99792 * 1 2 3 27 27 H 1.09005 * 109.47011 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46943 * 299.99693 * 1 2 3 29 29 H 1.08999 * 109.46943 * 240.00307 * 2 1 3 30 30 H 1.09000 * 109.47664 * 120.00207 * 2 1 3 31 31 H 1.08004 * 119.92964 * 359.97438 * 5 4 3 32 32 H 1.07996 * 119.86461 * 179.72435 * 6 5 4 33 33 H 1.09002 * 109.46929 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.47363 * 299.99893 * 9 8 7 35 35 H 1.09003 * 109.47282 * 60.00500 * 9 8 7 36 36 H 1.08001 * 120.06784 * 180.02562 * 10 7 6 37 37 H 1.08000 * 119.86503 * 0.03600 * 13 12 11 38 38 H 1.08002 * 120.00969 * 180.28697 * 15 14 13 39 39 H 0.97002 * 120.00158 * 354.90464 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3532 1.5254 -0.0005 5 6 4.1989 0.4275 -0.0059 6 6 5.5685 0.6072 -0.0005 7 6 6.1064 1.8874 0.0048 8 8 7.4558 2.0563 0.0105 9 6 8.2576 0.8735 0.0102 10 6 5.2724 2.9916 0.0052 11 6 3.8893 2.8171 -0.0002 12 6 2.9909 3.9954 0.0009 13 6 1.9228 4.0625 -0.9033 14 7 1.1182 5.1109 -0.9079 15 6 1.3101 6.1005 -0.0573 16 6 2.3835 6.0480 0.8527 17 6 2.5960 7.1092 1.7613 18 1 1.8791 7.9141 1.8288 19 6 3.7363 7.1171 2.5743 20 7 3.8880 8.0491 3.4785 21 14 5.0406 5.7962 2.3666 22 1 6.1379 6.0266 3.3403 23 1 4.4364 4.4615 2.6092 24 1 5.5842 5.8498 0.9857 25 7 3.1982 4.9860 0.8571 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.7863 -0.5706 -0.0092 32 1 6.2235 -0.2514 -0.0003 33 1 9.3121 1.1494 0.0156 34 1 8.0327 0.2818 0.8976 35 1 8.0397 0.2870 -0.8824 36 1 5.6921 3.9867 0.0089 37 1 1.7560 3.2539 -1.5996 38 1 0.6470 6.9530 -0.0618 39 1 3.2489 8.7764 3.5373 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241237671.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:23 Heat of formation + Delta-G solvation = -24.032611 kcal Electronic energy + Delta-G solvation = -24155.578679 eV Core-core repulsion = 20642.351492 eV Total energy + Delta-G solvation = -3513.227187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.41984 -39.20774 -38.81458 -36.30584 -34.20310 -32.99534 -31.93564 -31.40832 -29.98487 -28.54357 -27.01636 -25.89850 -24.17115 -23.45643 -22.07776 -21.41396 -20.62108 -18.58368 -18.08892 -17.55504 -16.48545 -16.11414 -15.79573 -15.64798 -15.55716 -14.90811 -14.60546 -14.08839 -13.72020 -13.38665 -13.20695 -13.00850 -12.93020 -12.69099 -12.48448 -12.34413 -12.15685 -11.99582 -11.51340 -11.40560 -11.18543 -11.13919 -10.89793 -10.54592 -10.25312 -9.83905 -9.75092 -9.39674 -9.09728 -8.88836 -8.00127 -7.69625 -7.48839 -7.15200 -4.91827 1.20322 1.62410 2.35017 2.61784 3.29359 3.45186 3.55506 3.63430 3.89612 3.95622 4.35820 4.57245 4.72309 4.79523 4.91622 4.98365 5.07830 5.11291 5.16548 5.20476 5.32872 5.41376 5.44389 5.56149 5.62562 5.77620 5.79301 5.96075 5.98503 6.08194 6.18763 6.25174 6.40456 6.47563 6.67081 6.75746 6.89714 7.30109 7.33910 7.44489 7.66140 7.88691 8.06163 8.42751 8.84733 9.32935 9.87595 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.011026 B = 0.007048 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.767203 B = 3971.801765 C = 5903.375425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.299 6.299 4 C 0.115 3.885 5 C -0.175 4.175 6 C -0.169 4.169 7 C 0.087 3.913 8 O -0.316 6.316 9 C 0.029 3.971 10 C -0.089 4.089 11 C -0.013 4.013 12 C 0.172 3.828 13 C -0.078 4.078 14 N -0.421 5.421 15 C -0.042 4.042 16 C 0.201 3.799 17 C -0.455 4.455 18 H 0.089 0.911 19 C 0.044 3.956 20 N -0.794 5.794 21 Si 1.138 2.862 22 H -0.326 1.326 23 H -0.269 1.269 24 H -0.288 1.288 25 N -0.532 5.532 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.176 -16.784 -5.419 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.213 6.213 4 C 0.069 3.931 5 C -0.194 4.194 6 C -0.188 4.188 7 C 0.043 3.957 8 O -0.230 6.230 9 C -0.066 4.066 10 C -0.108 4.108 11 C -0.015 4.015 12 C 0.029 3.971 13 C -0.235 4.235 14 N -0.132 5.132 15 C -0.213 4.213 16 C 0.076 3.924 17 C -0.488 4.488 18 H 0.107 0.893 19 C -0.178 4.178 20 N -0.415 5.415 21 Si 0.972 3.028 22 H -0.259 1.259 23 H -0.196 1.196 24 H -0.217 1.217 25 N -0.255 5.255 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.431 -16.903 -4.764 18.112 hybrid contribution -1.510 0.211 -0.508 1.607 sum 2.921 -16.692 -5.273 17.747 Atomic orbital electron populations 1.21747 0.92890 1.02290 1.03909 1.22740 0.95953 0.82623 1.00828 1.86240 1.18307 1.28150 1.88566 1.18761 0.82758 0.92632 0.98970 1.20827 0.93281 0.97674 1.07583 1.20954 0.95431 0.95759 1.06639 1.18709 0.82760 0.93310 1.00943 1.86109 1.14373 1.33093 1.89472 1.22995 0.95165 0.87487 1.00974 1.20496 0.90499 0.98590 1.01198 1.17686 0.91503 0.89665 1.02682 1.20000 0.93020 0.91641 0.92434 1.22404 0.97192 0.99162 1.04699 1.67725 1.25117 1.00273 1.20118 1.23160 1.01369 0.98944 0.97803 1.19428 0.89722 0.90832 0.92417 1.20768 1.07097 1.04960 1.15951 0.89329 1.27806 1.00135 1.00632 0.89277 1.70640 1.36767 1.08725 1.25319 0.82196 0.71308 0.74554 0.74746 1.25914 1.19631 1.21656 1.67595 1.30807 1.02894 1.24176 0.91345 0.90773 0.91492 0.92334 0.92444 0.85177 0.85361 0.88476 0.92892 0.92974 0.83938 0.84621 0.84329 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 37.16 0.38 -1.19 16 2 C 0.05 0.63 5.46 37.16 0.20 0.83 16 3 O -0.30 -5.05 8.31 -19.33 -0.16 -5.21 16 4 C 0.12 2.01 6.58 -38.85 -0.26 1.75 16 5 C -0.17 -2.44 9.03 -39.49 -0.36 -2.79 16 6 C -0.17 -2.29 9.03 -39.39 -0.36 -2.65 16 7 C 0.09 1.43 6.68 -39.30 -0.26 1.17 16 8 O -0.32 -4.75 10.49 -19.71 -0.21 -4.96 16 9 C 0.03 0.28 9.81 101.05 0.99 1.27 16 10 C -0.09 -1.74 9.16 -39.10 -0.36 -2.10 16 11 C -0.01 -0.27 5.63 -104.78 -0.59 -0.86 16 12 C 0.17 4.10 6.14 -82.77 -0.51 3.59 16 13 C -0.08 -1.79 9.94 -16.71 -0.17 -1.96 16 14 N -0.42 -10.20 10.47 -12.04 -0.13 -10.32 16 15 C -0.04 -1.03 10.97 -16.55 -0.18 -1.21 16 16 C 0.20 5.33 6.38 -84.84 -0.54 4.79 16 17 C -0.46 -12.25 9.59 -37.74 -0.36 -12.61 16 18 H 0.09 2.32 8.05 -52.48 -0.42 1.90 16 19 C 0.04 1.20 5.52 -17.34 -0.10 1.11 16 20 N -0.79 -21.39 13.65 55.55 0.76 -20.63 16 21 Si 1.14 28.73 24.42 -169.99 -4.15 24.58 16 22 H -0.33 -8.13 7.11 56.52 0.40 -7.73 16 23 H -0.27 -6.92 6.58 56.52 0.37 -6.55 16 24 H -0.29 -7.15 6.27 56.52 0.35 -6.80 16 25 N -0.53 -13.92 4.58 -7.52 -0.03 -13.95 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 30 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 31 H 0.13 1.38 6.29 -52.48 -0.33 1.05 16 32 H 0.13 1.29 6.27 -52.49 -0.33 0.97 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.44 7.65 -51.93 -0.40 0.05 16 35 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 36 H 0.14 3.00 6.36 -52.49 -0.33 2.66 16 37 H 0.14 2.84 7.52 -52.49 -0.39 2.44 16 38 H 0.14 3.10 8.06 -52.49 -0.42 2.68 16 39 H 0.29 7.28 8.72 -40.82 -0.36 6.92 16 LS Contribution 326.57 15.07 4.92 4.92 Total: -1.00 -31.15 326.57 -6.20 -37.34 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.74 Total: -0.92 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -2.46 Total: -10.85 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.60 Total: -44.90 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.37 Total: -10.17 kcal Atomic # 14 Polarization: 28.73 SS G_CDS: -4.15 Total: 24.58 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.15 -6.20 -37.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241237671.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.312 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds