Wall clock time and date at job start Fri Apr 10 2020 20:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 120.00088 * 2 1 4 4 H 1.48503 * 109.46708 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46845 * 299.99816 * 3 2 1 6 6 H 1.48497 * 109.46842 * 60.00005 * 3 2 1 7 7 C 1.38816 * 119.99610 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99576 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.50239 * 130.84023 * 359.95008 * 9 7 2 11 11 H 1.08998 * 116.45679 * 0.03628 * 10 9 7 12 12 C 1.55839 * 101.05246 * 234.00277 * 10 9 7 13 13 C 1.54854 * 103.44574 * 327.06446 * 12 10 9 14 14 C 1.50243 * 130.83668 * 179.97438 * 9 7 2 15 15 H 1.08998 * 116.45408 * 359.96968 * 14 9 7 16 16 C 1.55843 * 101.05272 * 233.93214 * 14 9 7 17 17 H 1.08994 * 110.63067 * 208.41459 * 16 14 9 18 18 N 1.46504 * 110.62445 * 85.54942 * 16 14 9 19 19 C 1.34778 * 119.99725 * 155.00300 * 18 16 14 20 20 O 1.21279 * 119.99686 * 359.97438 * 19 18 16 21 21 C 1.50692 * 119.99862 * 180.02562 * 19 18 16 22 22 H 1.09004 * 112.90785 * 311.24673 * 21 19 18 23 23 C 1.53784 * 113.61665 * 82.50065 * 21 19 18 24 24 C 1.53778 * 87.08081 * 139.98095 * 23 21 19 25 25 C 1.53778 * 87.08449 * 334.56700 * 24 23 21 26 26 F 1.39902 * 113.61622 * 270.88935 * 25 24 23 27 27 F 1.39898 * 113.61568 * 139.98171 * 25 24 23 28 28 C 1.54854 * 103.44467 * 327.06271 * 16 14 9 29 29 H 0.96997 * 119.99881 * 0.02562 * 1 2 3 30 30 H 1.08993 * 110.63167 * 208.57433 * 12 10 9 31 31 H 1.09007 * 110.76130 * 85.61336 * 12 10 9 32 32 H 1.09000 * 110.62566 * 241.50213 * 13 12 10 33 33 H 1.09005 * 110.62736 * 118.49166 * 13 12 10 34 34 H 0.96995 * 119.99939 * 335.00518 * 18 16 14 35 35 H 1.08993 * 113.61313 * 254.52692 * 23 21 19 36 36 H 1.09000 * 113.61578 * 25.43424 * 23 21 19 37 37 H 1.08999 * 113.61526 * 220.02035 * 24 23 21 38 38 H 1.08999 * 113.69218 * 89.12660 * 24 23 21 39 39 H 1.09000 * 110.62385 * 118.48407 * 28 16 14 40 40 H 1.08996 * 110.62868 * 241.51031 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1501 -2.6705 0.0010 11 1 -0.8105 -1.8034 0.0008 12 6 -0.2740 -3.6099 1.2383 13 6 1.0670 -4.3842 1.2383 14 6 1.8186 -3.8073 0.0005 15 1 2.8998 -3.9456 0.0000 16 6 1.0661 -4.3850 -1.2358 17 1 0.8946 -5.4547 -1.1157 18 7 1.8150 -4.1190 -2.4665 19 6 1.6502 -4.9155 -3.5412 20 8 0.8822 -5.8527 -3.4891 21 6 2.4210 -4.6422 -4.8069 22 1 2.3682 -3.5992 -5.1189 23 6 3.8503 -5.2094 -4.7924 24 6 3.6241 -5.6047 -6.2611 25 6 2.1210 -5.6396 -5.9383 26 9 1.6742 -6.8850 -5.4837 27 9 1.3173 -5.1102 -6.9537 28 6 -0.2750 -3.6107 -1.2352 29 1 -0.4850 0.8400 -0.0004 30 1 -1.1130 -4.2951 1.1177 31 1 -0.3823 -3.0296 2.1547 32 1 0.8930 -5.4534 1.1178 33 1 1.6250 -4.1858 2.1535 34 1 2.4295 -3.3696 -2.5079 35 1 4.6202 -4.4495 -4.6584 36 1 3.9750 -6.0621 -4.1249 37 1 4.0379 -6.5794 -6.5197 38 1 3.9001 -4.8257 -6.9719 39 1 -0.3828 -3.0288 -2.1505 40 1 -1.1139 -4.2958 -1.1135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097304821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:59 Heat of formation + Delta-G solvation = -68.037682 kcal Electronic energy + Delta-G solvation = -25558.634700 eV Core-core repulsion = 21625.102874 eV Total energy + Delta-G solvation = -3933.531826 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.74079 -47.06277 -40.00144 -38.78983 -36.93983 -33.79923 -32.55633 -29.16375 -29.07521 -28.25033 -26.61758 -25.13826 -24.22851 -21.92814 -20.51692 -19.90139 -19.72826 -18.71032 -17.93449 -17.22169 -16.99786 -16.44195 -15.97413 -15.47501 -14.88676 -14.56295 -14.46649 -13.97163 -13.91488 -13.61688 -13.54610 -13.29445 -13.15127 -12.72039 -12.12133 -12.00550 -11.88631 -11.61751 -11.38743 -11.22910 -11.15262 -10.97085 -10.95364 -10.80455 -10.53929 -10.37989 -10.11455 -9.95167 -9.66284 -9.25677 -9.15979 -9.00505 -8.49250 -6.99036 -5.78869 -3.18112 2.75548 3.29272 3.32475 3.37417 3.40768 3.49485 3.63234 4.16645 4.22714 4.32510 4.36590 5.02017 5.09271 5.11199 5.24463 5.29050 5.32499 5.38065 5.46153 5.61414 5.67483 5.84931 5.89073 6.02906 6.08709 6.12194 6.28308 6.39743 6.46846 6.57755 6.71978 6.80574 6.92714 7.08449 7.29424 7.43312 7.75624 7.92401 8.11708 8.54224 9.02836 9.66065 10.47393 11.30340 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.017182 B = 0.004606 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.250355 B = 6077.943048 C = 6946.252820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.216 4.216 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.156 3.844 11 H 0.151 0.849 12 C -0.139 4.139 13 C -0.128 4.128 14 C 0.126 3.874 15 H 0.088 0.912 16 C 0.128 3.872 17 H 0.080 0.920 18 N -0.700 5.700 19 C 0.516 3.484 20 O -0.535 6.535 21 C -0.170 4.170 22 H 0.138 0.862 23 C -0.118 4.118 24 C -0.164 4.164 25 C 0.280 3.720 26 F -0.159 7.159 27 F -0.191 7.191 28 C -0.144 4.144 29 H 0.254 0.746 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.403 0.597 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.059 0.941 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.220 -9.260 -8.285 14.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.344 4.344 8 H 0.097 0.903 9 N -0.311 5.311 10 C 0.050 3.950 11 H 0.168 0.832 12 C -0.179 4.179 13 C -0.168 4.168 14 C 0.017 3.983 15 H 0.106 0.894 16 C 0.022 3.978 17 H 0.098 0.902 18 N -0.349 5.349 19 C 0.301 3.699 20 O -0.412 6.412 21 C -0.193 4.193 22 H 0.156 0.844 23 C -0.156 4.156 24 C -0.202 4.202 25 C 0.243 3.757 26 F -0.140 7.140 27 F -0.172 7.172 28 C -0.184 4.184 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.238 0.762 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.132 0.868 39 H 0.078 0.922 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.658 -9.605 -8.235 14.297 hybrid contribution 0.488 1.188 -0.074 1.286 sum 7.145 -8.417 -8.309 13.818 Atomic orbital electron populations 1.69504 1.05022 1.24926 1.57154 1.24713 0.95584 0.97497 1.02757 0.86007 0.78543 0.83660 0.77279 1.20607 1.21833 1.21792 1.19042 0.90208 0.81892 1.43219 0.90344 1.46517 1.01601 0.98569 1.84402 1.23681 0.87349 0.95169 0.88847 0.83181 1.23070 0.95271 0.98292 1.01242 1.22896 0.97745 0.97652 0.98555 1.23153 0.96000 0.86912 0.92197 0.89426 1.22667 0.92861 0.98652 0.83665 0.90185 1.45976 1.45038 1.31141 1.12714 1.19904 0.82642 0.82963 0.84427 1.90748 1.37151 1.30067 1.83205 1.24058 0.97932 1.02565 0.94705 0.84369 1.22747 0.94456 1.02274 0.96094 1.24068 0.91871 1.05288 0.99002 1.21754 0.88417 0.80609 0.84960 1.93095 1.90678 1.41462 1.88716 1.93011 1.76929 1.85839 1.61401 1.23459 0.94992 0.98401 1.01555 0.93563 0.93322 0.92618 0.92990 0.92426 0.76194 0.88281 0.88348 0.88464 0.86757 0.92231 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.38 10.48 55.49 0.58 -24.80 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 20.94 29.55 -169.99 -5.02 15.91 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.22 -5.48 10.59 -15.06 -0.16 -5.64 16 8 H 0.08 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.59 -13.61 2.99 -145.81 -0.44 -14.04 16 10 C 0.16 3.51 4.68 -62.82 -0.29 3.22 16 11 H 0.15 3.89 5.57 -51.93 -0.29 3.60 16 12 C -0.14 -2.73 6.44 -24.24 -0.16 -2.89 16 13 C -0.13 -2.30 6.44 -24.22 -0.16 -2.45 16 14 C 0.13 2.38 5.06 -62.78 -0.32 2.07 16 15 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 16 C 0.13 2.35 2.80 -65.43 -0.18 2.16 16 17 H 0.08 1.50 7.23 -51.93 -0.38 1.12 16 18 N -0.70 -11.58 5.07 -51.40 -0.26 -11.84 16 19 C 0.52 8.49 7.31 -10.99 -0.08 8.41 16 20 O -0.53 -10.79 14.39 5.56 0.08 -10.71 16 21 C -0.17 -2.08 4.03 -90.96 -0.37 -2.44 16 22 H 0.14 1.45 8.14 -51.93 -0.42 1.02 16 23 C -0.12 -1.03 7.61 -25.92 -0.20 -1.23 16 24 C -0.16 -1.35 7.87 -25.92 -0.20 -1.56 16 25 C 0.28 3.61 3.02 -25.92 -0.08 3.53 16 26 F -0.16 -2.54 15.20 2.25 0.03 -2.51 16 27 F -0.19 -2.71 17.41 2.25 0.04 -2.67 16 28 C -0.14 -2.93 6.23 -24.25 -0.15 -3.08 16 29 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.05 0.86 7.81 -51.93 -0.41 0.45 16 31 H 0.05 1.15 8.14 -51.92 -0.42 0.72 16 32 H 0.05 0.82 7.82 -51.93 -0.41 0.42 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.40 6.32 8.66 -40.82 -0.35 5.96 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.32 7.98 -51.93 -0.41 0.90 16 40 H 0.05 1.04 7.81 -51.93 -0.41 0.64 16 LS Contribution 328.11 15.07 4.94 4.94 Total: -1.00 -30.65 328.11 -8.06 -38.71 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.58 Total: 7.27 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.44 Total: -0.26 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.11 Total: -50.69 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.07 Total: -5.18 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.65 -8.06 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097304821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.331 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds