Wall clock time and date at job start Fri Apr 10 2020 20:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35753 * 116.99600 * 2 1 4 4 C 1.38761 * 119.57569 * 179.97438 * 3 2 1 5 5 C 1.38821 * 119.12940 * 180.02562 * 4 3 2 6 6 O 1.35813 * 120.84073 * 179.97438 * 5 4 3 7 7 C 1.42910 * 117.00160 * 0.02562 * 6 5 4 8 8 C 1.40033 * 118.32005 * 0.27375 * 5 4 3 9 9 N 1.40011 * 120.46042 * 179.72387 * 8 5 4 10 10 C 1.38693 * 119.99800 * 75.27509 * 9 8 5 11 11 C 1.39647 * 119.84995 * 7.93235 * 10 9 8 12 12 C 1.36288 * 120.15558 * 179.76238 * 11 10 9 13 13 C 1.40912 * 119.84033 * 0.53242 * 12 11 10 14 14 C 1.41091 * 120.14693 * 179.69976 * 13 12 11 15 15 H 1.07993 * 120.00254 * 157.74548 * 14 13 12 16 16 C 1.39831 * 120.00052 * 337.74318 * 14 13 12 17 17 N 1.30920 * 119.99965 * 327.09001 * 16 14 13 18 18 Si 1.86799 * 119.99720 * 147.08758 * 16 14 13 19 19 H 1.48496 * 109.46996 * 94.99229 * 18 16 14 20 20 H 1.48507 * 109.46832 * 214.99120 * 18 16 14 21 21 H 1.48492 * 109.47547 * 334.98906 * 18 16 14 22 22 C 1.40911 * 119.70396 * 359.72236 * 13 12 11 23 23 C 1.36287 * 119.83890 * 359.97438 * 22 13 12 24 24 C 1.38473 * 119.07954 * 359.45673 * 8 5 4 25 25 N 1.32074 * 120.77660 * 0.55850 * 24 8 5 26 26 H 1.08999 * 109.47511 * 300.00079 * 1 2 3 27 27 H 1.08999 * 109.47288 * 60.00584 * 1 2 3 28 28 H 1.09003 * 109.46615 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.44095 * 359.97438 * 4 3 2 30 30 H 1.09000 * 109.46977 * 179.97438 * 7 6 5 31 31 H 1.08996 * 109.46924 * 59.99674 * 7 6 5 32 32 H 1.08999 * 109.46888 * 300.00079 * 7 6 5 33 33 H 0.96998 * 119.99991 * 255.27558 * 9 8 5 34 34 H 1.08002 * 119.91762 * 0.02562 * 11 10 9 35 35 H 1.08002 * 120.07435 * 180.28117 * 12 11 10 36 36 H 0.97003 * 120.00083 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.08044 * 179.97438 * 22 13 12 38 38 H 1.08007 * 119.92304 * 179.97438 * 23 22 13 39 39 H 1.08004 * 119.61189 * 180.26756 * 24 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 3.4314 1.2721 0.0005 5 6 4.0519 2.5139 0.0011 6 8 5.4062 2.6155 0.0021 7 6 6.1485 1.3943 0.0021 8 6 3.2461 3.6591 0.0069 9 7 3.8247 4.9341 0.0135 10 6 4.3894 5.4453 -1.1455 11 6 4.2346 4.7625 -2.3538 12 6 4.7827 5.2618 -3.4974 13 6 5.5165 6.4641 -3.4564 14 6 6.0920 6.9834 -4.6353 15 1 6.3321 8.0343 -4.7014 16 6 6.3517 6.1375 -5.7180 17 7 6.6892 4.8901 -5.5079 18 14 6.2169 6.7873 -7.4641 19 1 7.5568 7.2194 -7.9363 20 1 5.7009 5.7151 -8.3528 21 1 5.2857 7.9436 -7.4916 22 6 5.6732 7.1451 -2.2328 23 6 5.1145 6.6378 -1.0980 24 6 1.8691 3.5132 0.0005 25 7 1.3166 2.3136 0.0000 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.0200 0.3665 0.0014 30 1 7.2154 1.6176 0.0025 31 1 5.8988 0.8174 -0.8883 32 1 5.8975 0.8165 0.8916 33 1 3.8307 5.4598 0.8287 34 1 3.6757 3.8388 -2.3828 35 1 4.6584 4.7349 -4.4320 36 1 6.8690 4.3032 -6.2590 37 1 6.2347 8.0669 -2.1944 38 1 5.2341 7.1584 -0.1593 39 1 1.2395 4.3907 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249908021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:54 Heat of formation + Delta-G solvation = -4.831125 kcal Electronic energy + Delta-G solvation = -23688.747525 eV Core-core repulsion = 20176.352976 eV Total energy + Delta-G solvation = -3512.394548 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81558 -38.95511 -37.95732 -37.12185 -34.94232 -33.07055 -31.28800 -29.96675 -29.43798 -28.24620 -27.36472 -26.94594 -24.48421 -22.89311 -22.35464 -21.11471 -20.15300 -18.83932 -17.43430 -17.25981 -16.63951 -16.43880 -16.03218 -15.87903 -15.40779 -14.99010 -14.90075 -14.29358 -13.87475 -13.64152 -13.23925 -13.11594 -12.60395 -12.57067 -12.01542 -11.98963 -11.93453 -11.66471 -11.52674 -11.38538 -11.05548 -10.98854 -10.89999 -10.51749 -9.96470 -9.75930 -9.36897 -9.18257 -8.85663 -8.66591 -8.11670 -7.49427 -6.86432 -6.47593 -4.01631 1.22459 1.47681 2.88711 3.01367 3.10594 3.13572 3.17734 3.32347 3.38021 3.84529 4.01791 4.19380 4.44602 4.64560 5.00129 5.06493 5.16826 5.21342 5.26054 5.30901 5.42808 5.54675 5.59422 5.74665 5.78257 5.98590 6.27489 6.31127 6.36576 6.90925 6.94086 7.16209 7.20227 7.29654 7.32699 7.59032 7.65138 7.79189 7.96584 8.13763 8.28177 8.50125 8.66184 8.74710 9.00968 9.13358 10.21668 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.003865 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.330068 B = 7242.351050 C = 7550.436043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.311 6.311 3 C 0.339 3.661 4 C -0.280 4.280 5 C 0.193 3.807 6 O -0.281 6.281 7 C 0.023 3.977 8 C 0.067 3.933 9 N -0.695 5.695 10 C 0.075 3.925 11 C -0.136 4.136 12 C -0.145 4.145 13 C 0.090 3.910 14 C -0.477 4.477 15 H 0.077 0.923 16 C 0.090 3.910 17 N -0.781 5.781 18 Si 0.888 3.112 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.259 1.259 22 C -0.198 4.198 23 C -0.138 4.138 24 C 0.154 3.846 25 N -0.555 5.555 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.142 0.858 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.394 0.606 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.279 0.721 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 -8.686 10.038 14.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.218 6.218 3 C 0.160 3.840 4 C -0.302 4.302 5 C 0.136 3.864 6 O -0.190 6.190 7 C -0.073 4.073 8 C -0.032 4.032 9 N -0.327 5.327 10 C -0.019 4.019 11 C -0.157 4.157 12 C -0.165 4.165 13 C 0.087 3.913 14 C -0.506 4.506 15 H 0.095 0.905 16 C -0.130 4.130 17 N -0.405 5.405 18 Si 0.712 3.288 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.183 1.183 22 C -0.218 4.218 23 C -0.159 4.159 24 C -0.001 4.001 25 N -0.283 5.283 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.160 0.840 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.230 0.770 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.295 -9.191 9.822 15.302 hybrid contribution 0.753 0.100 -0.649 0.999 sum -6.542 -9.091 9.173 14.477 Atomic orbital electron populations 1.22814 0.77422 1.02537 1.02554 1.86208 1.22758 1.24779 1.88089 1.19373 0.88395 0.84664 0.91578 1.20919 0.93144 0.97989 1.18130 1.19794 0.83774 0.92749 0.90071 1.86311 1.13774 1.32347 1.86555 1.23159 0.96835 0.86022 1.01234 1.17715 0.90719 0.85390 1.09348 1.40871 1.67039 1.13768 1.11060 1.17179 1.03215 0.96190 0.85319 1.19945 1.04265 0.99145 0.92342 1.20606 1.00815 0.98823 0.96275 1.17436 0.90717 0.91380 0.91801 1.19294 1.37849 0.95987 0.97487 0.90525 1.25806 0.91683 0.94261 1.01240 1.69994 1.29611 1.06941 1.33972 0.86642 0.79474 0.80206 0.82457 1.19728 1.20143 1.18307 1.20459 1.06590 1.02352 0.92399 1.19805 1.02192 0.96561 0.97377 1.22639 0.91427 0.93634 0.92420 1.67315 1.40150 0.98291 1.22542 0.92375 0.92242 0.88967 0.84011 0.87860 0.92316 0.92738 0.77041 0.90183 0.87975 0.91075 0.88963 0.89426 0.81735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.31 -4.20 10.48 -18.97 -0.20 -4.40 16 3 C 0.34 5.13 7.49 -17.17 -0.13 5.00 16 4 C -0.28 -4.17 9.03 -39.17 -0.35 -4.53 16 5 C 0.19 3.22 6.37 -38.69 -0.25 2.97 16 6 O -0.28 -4.81 10.30 -19.16 -0.20 -5.01 16 7 C 0.02 0.28 9.84 101.05 0.99 1.27 16 8 C 0.07 1.13 4.51 -83.36 -0.38 0.75 16 9 N -0.69 -12.40 5.20 -8.08 -0.04 -12.44 16 10 C 0.08 1.65 6.61 -83.71 -0.55 1.10 16 11 C -0.14 -3.26 9.13 -39.76 -0.36 -3.63 16 12 C -0.15 -3.85 8.74 -39.27 -0.34 -4.19 16 13 C 0.09 2.42 5.57 -106.79 -0.59 1.83 16 14 C -0.48 -12.92 8.93 -37.90 -0.34 -13.26 16 15 H 0.08 2.01 8.02 -52.49 -0.42 1.59 16 16 C 0.09 2.30 4.75 -17.34 -0.08 2.22 16 17 N -0.78 -20.64 11.83 55.54 0.66 -19.99 16 18 Si 0.89 18.91 29.66 -169.99 -5.04 13.87 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 22 C -0.20 -4.89 9.74 -39.27 -0.38 -5.27 16 23 C -0.14 -3.07 9.83 -39.76 -0.39 -3.46 16 24 C 0.15 2.36 11.11 -17.36 -0.19 2.17 16 25 N -0.56 -8.49 9.20 -13.21 -0.12 -8.62 16 26 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 27 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.14 1.80 6.45 -52.49 -0.34 1.47 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.69 7.71 -51.93 -0.40 0.29 16 32 H 0.05 0.54 7.71 -51.93 -0.40 0.14 16 33 H 0.39 6.07 8.83 -40.82 -0.36 5.71 16 34 H 0.08 1.88 6.81 -52.49 -0.36 1.52 16 35 H 0.10 2.80 6.56 -52.49 -0.34 2.46 16 36 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 37 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 38 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 39 H 0.17 2.19 8.06 -52.48 -0.42 1.76 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -30.36 337.06 -6.88 -37.24 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.71 Total: 9.83 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -2.30 Total: -15.56 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.49 Total: -41.04 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.40 Total: -9.41 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.04 Total: 13.87 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.36 -6.88 -37.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249908021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.405 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds