Wall clock time and date at job start Fri Apr 10 2020 20:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39724 * 125.77952 * 2 1 4 4 C 1.36159 * 107.86065 * 180.10754 * 3 2 1 5 5 N 1.39359 * 126.26341 * 179.90173 * 4 3 2 6 6 C 1.34780 * 119.99984 * 359.68524 * 5 4 3 7 7 O 1.21538 * 119.99909 * 0.02562 * 6 5 4 8 8 C 1.48120 * 119.99746 * 179.97438 * 6 5 4 9 9 C 1.39333 * 119.72440 * 180.27730 * 8 6 5 10 10 C 1.38572 * 119.05946 * 180.23401 * 9 8 6 11 11 C 1.38636 * 118.48669 * 359.50514 * 10 9 8 12 12 C 1.38552 * 119.36135 * 0.25164 * 11 10 9 13 13 C 1.50697 * 119.54985 * 179.97438 * 12 11 10 14 14 N 1.31529 * 120.90303 * 0.02562 * 12 11 10 15 15 N 1.35815 * 107.46986 * 359.64102 * 4 3 2 16 16 C 1.46500 * 126.09090 * 180.20375 * 15 4 3 17 17 C 1.50698 * 109.46780 * 90.00325 * 16 15 4 18 18 H 1.07997 * 120.00244 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99967 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99641 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00090 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47122 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47096 * 119.99415 * 21 19 17 24 24 H 1.48498 * 109.46938 * 239.99230 * 21 19 17 25 25 N 1.30835 * 125.77782 * 179.69867 * 2 1 3 26 26 H 1.09003 * 109.47076 * 270.28026 * 1 2 3 27 27 H 1.08999 * 109.47178 * 30.27865 * 1 2 3 28 28 H 1.08992 * 109.47117 * 150.27670 * 1 2 3 29 29 H 1.08003 * 126.06958 * 359.97438 * 3 2 1 30 30 H 0.96996 * 120.00072 * 179.68955 * 5 4 3 31 31 H 1.08001 * 120.47225 * 359.97438 * 9 8 6 32 32 H 1.08002 * 120.75982 * 179.78599 * 10 9 8 33 33 H 1.08005 * 120.32262 * 180.27479 * 11 10 9 34 34 H 1.08999 * 109.47211 * 90.00660 * 13 12 11 35 35 H 1.09008 * 109.46961 * 210.00542 * 13 12 11 36 36 H 1.09000 * 109.47346 * 330.00094 * 13 12 11 37 37 H 1.08995 * 109.46871 * 209.99534 * 16 15 4 38 38 H 1.08991 * 109.47314 * 329.99971 * 16 15 4 39 39 H 0.97009 * 119.99889 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1335 0.0000 4 6 3.6194 0.7146 -0.0024 5 7 4.7495 1.5302 -0.0052 6 6 4.6129 2.8710 -0.0120 7 8 3.5041 3.3688 -0.0153 8 6 5.8140 3.7378 -0.0144 9 6 5.6661 5.1232 -0.0156 10 6 6.7991 5.9210 -0.0228 11 6 8.0413 5.3055 -0.0179 12 6 8.1138 3.9219 -0.0115 13 6 9.4619 3.2483 -0.0067 14 7 7.0222 3.1882 -0.0104 15 7 3.6088 -0.6435 0.0042 16 6 4.7859 -1.5157 0.0086 17 6 5.1892 -1.8078 1.4309 18 1 4.6255 -1.3857 2.2496 19 6 6.2786 -2.6132 1.6870 20 7 6.9654 -3.1269 0.6900 21 14 6.7790 -2.9748 3.4500 22 1 5.8512 -2.2822 4.3799 23 1 6.7204 -4.4390 3.6909 24 1 8.1637 -2.4903 3.6808 25 7 2.2719 -1.0614 0.0056 26 1 -0.3633 0.0050 1.0277 27 1 -0.3633 0.8875 -0.5181 28 1 -0.3633 -0.8924 -0.5095 29 1 1.9875 2.1598 -0.0004 30 1 5.6343 1.1329 -0.0022 31 1 4.6824 5.5691 -0.0153 32 1 6.7164 6.9979 -0.0274 33 1 8.9439 5.8987 -0.0188 34 1 9.7856 3.0905 1.0220 35 1 9.3897 2.2874 -0.5164 36 1 10.1853 3.8796 -0.5226 37 1 4.5479 -2.4495 -0.5006 38 1 5.6077 -1.0195 -0.5075 39 1 7.7317 -3.6938 0.8701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067660318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:55 Heat of formation + Delta-G solvation = 74.355338 kcal Electronic energy + Delta-G solvation = -23533.884622 eV Core-core repulsion = 20057.216607 eV Total energy + Delta-G solvation = -3476.668014 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.03927 -40.33613 -38.74313 -34.77793 -33.75413 -33.18257 -32.69060 -31.96884 -29.15003 -28.39636 -27.76920 -25.99326 -24.94379 -22.90256 -22.43180 -21.36293 -19.68057 -19.49054 -17.52110 -16.88368 -16.65929 -16.39977 -15.76158 -15.42233 -15.21125 -14.61218 -14.49900 -14.13193 -13.86467 -13.84687 -13.31725 -12.84549 -12.74803 -12.54379 -12.46982 -12.38555 -12.14227 -12.00894 -11.75461 -11.52652 -11.02456 -10.87426 -10.36538 -10.32420 -10.22428 -10.15055 -9.74832 -9.69533 -9.51721 -9.18327 -8.67275 -7.86791 -7.41702 -6.28199 -4.35885 0.46245 1.01326 2.34221 2.77584 3.07958 3.18702 3.26749 3.33372 3.54193 3.73210 3.82529 3.95663 4.29044 4.45787 4.61204 4.75546 4.85140 5.05418 5.17020 5.36834 5.38886 5.40164 5.48449 5.63714 5.80083 5.86513 5.94552 6.06236 6.18885 6.21066 6.31077 6.39584 6.43870 6.67853 6.90153 7.08180 7.50543 7.57977 7.64063 7.71557 7.85184 7.92796 8.30005 8.65841 8.75186 9.31173 10.79219 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.009617 B = 0.005754 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.827380 B = 4864.993433 C = 7287.249267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.049 3.951 3 C -0.292 4.292 4 C 0.298 3.702 5 N -0.618 5.618 6 C 0.577 3.423 7 O -0.509 6.509 8 C 0.092 3.908 9 C -0.117 4.117 10 C -0.079 4.079 11 C -0.151 4.151 12 C 0.131 3.869 13 C -0.108 4.108 14 N -0.455 5.455 15 N -0.344 5.344 16 C 0.256 3.744 17 C -0.538 4.538 18 H 0.065 0.935 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.281 1.281 25 N -0.282 5.282 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.162 0.838 30 H 0.427 0.573 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.557 17.272 -2.648 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.115 4.115 3 C -0.324 4.324 4 C 0.076 3.924 5 N -0.264 5.264 6 C 0.362 3.638 7 O -0.383 6.383 8 C -0.046 4.046 9 C -0.138 4.138 10 C -0.105 4.105 11 C -0.171 4.171 12 C -0.009 4.009 13 C -0.165 4.165 14 N -0.168 5.168 15 N -0.130 5.130 16 C 0.138 3.862 17 C -0.576 4.576 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.527 5.527 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 N -0.108 5.108 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.179 0.821 30 H 0.265 0.735 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.166 15.234 -2.695 15.621 hybrid contribution 1.019 1.220 0.990 1.872 sum 3.184 16.454 -1.705 16.846 Atomic orbital electron populations 1.20017 0.87563 1.02323 1.02145 1.22006 0.96520 0.90981 1.02041 1.21262 0.89030 1.00452 1.21631 1.18041 0.87871 0.83435 1.03079 1.42522 1.09008 1.05168 1.69717 1.17723 0.87848 0.81137 0.77127 1.90716 1.24939 1.74066 1.48578 1.20899 0.91155 0.91979 1.00596 1.22080 1.00947 0.92950 0.97798 1.21601 0.91822 1.00785 0.96280 1.22208 0.98970 0.95511 1.00450 1.21359 0.94469 0.90597 0.94506 1.20783 0.90378 1.01675 1.03647 1.67447 0.97798 1.41026 1.10512 1.49516 1.06472 1.02025 1.54962 1.19648 0.77846 0.89686 0.98979 1.21369 1.13293 1.31661 0.91314 0.91696 1.24919 0.95655 0.94921 0.98126 1.69930 1.19173 1.32610 1.31023 0.86315 0.78373 0.78327 0.83779 1.19594 1.20553 1.20641 1.77326 0.86171 1.21848 1.25406 0.91319 0.91150 0.91550 0.82100 0.73463 0.83209 0.83942 0.84220 0.89957 0.89747 0.90547 0.92502 0.93679 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.00 0.38 -0.56 16 2 C 0.05 1.02 7.20 -82.46 -0.59 0.43 16 3 C -0.29 -6.19 9.58 -39.77 -0.38 -6.57 16 4 C 0.30 6.67 7.68 -152.75 -1.17 5.50 16 5 N -0.62 -12.23 5.40 -12.12 -0.07 -12.30 16 6 C 0.58 10.31 7.77 -12.20 -0.09 10.21 16 7 O -0.51 -9.65 13.45 5.33 0.07 -9.57 16 8 C 0.09 1.38 6.75 -83.01 -0.56 0.82 16 9 C -0.12 -1.36 9.63 -39.05 -0.38 -1.74 16 10 C -0.08 -0.69 10.17 -39.31 -0.40 -1.09 16 11 C -0.15 -1.33 9.75 -39.32 -0.38 -1.71 16 12 C 0.13 1.50 6.78 -82.61 -0.56 0.94 16 13 C -0.11 -0.98 10.17 36.00 0.37 -0.61 16 14 N -0.46 -6.71 9.45 -6.07 -0.06 -6.76 16 15 N -0.34 -8.42 3.62 -61.46 -0.22 -8.64 16 16 C 0.26 6.66 6.02 -5.19 -0.03 6.63 16 17 C -0.54 -14.95 9.39 -34.44 -0.32 -15.28 16 18 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 19 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 20 N -0.89 -24.88 13.29 55.43 0.74 -24.14 16 21 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 N -0.28 -6.76 12.56 33.64 0.42 -6.34 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.16 3.27 5.83 -52.48 -0.31 2.96 16 30 H 0.43 8.39 7.32 -40.82 -0.30 8.09 16 31 H 0.15 1.60 7.64 -52.49 -0.40 1.20 16 32 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 36 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.05 1.16 7.52 -51.93 -0.39 0.77 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 342.90 15.07 5.17 5.17 Total: -1.00 -32.51 342.90 -7.94 -40.45 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -4.74 Total: 7.22 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -4.23 Total: -1.29 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.81 Total: -58.18 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.07 Total: -9.57 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.51 -7.94 -40.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067660318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.805 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds