Wall clock time and date at job start Fri Apr 10 2020 20:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39738 * 125.77949 * 2 1 4 4 C 1.36137 * 107.85940 * 180.12679 * 3 2 1 5 5 N 1.39381 * 126.26541 * 179.90834 * 4 3 2 6 6 C 1.34777 * 119.99675 * 359.68268 * 5 4 3 7 7 O 1.21575 * 120.00231 * 0.02562 * 6 5 4 8 8 C 1.47798 * 120.00051 * 180.02562 * 6 5 4 9 9 C 1.40046 * 120.56347 * 180.02562 * 8 6 5 10 10 C 1.38352 * 118.28847 * 179.97438 * 9 8 6 11 11 C 1.38353 * 119.30562 * 359.97438 * 10 9 8 12 12 C 1.50705 * 119.45951 * 180.02562 * 11 10 9 13 13 N 1.31934 * 121.08417 * 359.97438 * 11 10 9 14 14 C 1.31686 * 121.88273 * 0.02591 * 13 11 10 15 15 N 1.35810 * 107.47378 * 359.64044 * 4 3 2 16 16 C 1.46503 * 126.09606 * 180.20790 * 15 4 3 17 17 C 1.50697 * 109.47307 * 89.99742 * 16 15 4 18 18 H 1.07996 * 120.00143 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00142 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00030 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00242 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.46833 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47094 * 119.99948 * 21 19 17 24 24 H 1.48499 * 109.47005 * 240.00262 * 21 19 17 25 25 N 1.30826 * 125.78030 * 179.72126 * 2 1 3 26 26 H 1.08998 * 109.46567 * 270.25684 * 1 2 3 27 27 H 1.08999 * 109.47080 * 30.25050 * 1 2 3 28 28 H 1.08993 * 109.47317 * 150.25367 * 1 2 3 29 29 H 1.08000 * 126.06776 * 359.97438 * 3 2 1 30 30 H 0.96997 * 120.00307 * 179.69341 * 5 4 3 31 31 H 1.08002 * 120.85381 * 359.95496 * 9 8 6 32 32 H 1.08001 * 120.34554 * 180.02562 * 10 9 8 33 33 H 1.09000 * 109.46780 * 269.97566 * 12 11 10 34 34 H 1.09000 * 109.46787 * 29.97584 * 12 11 10 35 35 H 1.09000 * 109.47096 * 149.97980 * 12 11 10 36 36 H 1.07994 * 119.71953 * 179.97438 * 14 13 11 37 37 H 1.08999 * 109.47390 * 210.00521 * 16 15 4 38 38 H 1.09002 * 109.46953 * 330.00025 * 16 15 4 39 39 H 0.96995 * 120.00277 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1337 0.0000 4 6 3.6194 0.7148 -0.0029 5 7 4.7496 1.5304 -0.0056 6 6 4.6130 2.8712 -0.0121 7 8 3.5040 3.3693 -0.0150 8 6 5.8115 3.7361 -0.0156 9 6 5.6832 5.1307 -0.0218 10 6 6.8363 5.8952 -0.0243 11 6 8.0674 5.2638 -0.0202 12 6 9.3257 6.0932 -0.0223 13 7 8.1579 3.9476 -0.0133 14 6 7.0900 3.1770 -0.0107 15 7 3.6088 -0.6433 0.0035 16 6 4.7858 -1.5155 0.0075 17 6 5.1896 -1.8079 1.4296 18 1 4.6257 -1.3865 2.2486 19 6 6.2791 -2.6134 1.6853 20 7 6.9662 -3.1262 0.6879 21 14 6.7792 -2.9764 3.4481 22 1 5.8510 -2.2847 4.3784 23 1 6.7208 -4.4408 3.6876 24 1 8.1637 -2.4917 3.6796 25 7 2.2719 -1.0613 0.0052 26 1 -0.3632 0.0046 1.0277 27 1 -0.3633 0.8877 -0.5177 28 1 -0.3633 -0.8922 -0.5098 29 1 1.9876 2.1599 -0.0004 30 1 5.6345 1.1331 -0.0031 31 1 4.7092 5.5973 -0.0248 32 1 6.7760 6.9735 -0.0286 33 1 9.6304 6.2883 -1.0505 34 1 9.1385 7.0386 0.4868 35 1 10.1181 5.5525 0.4951 36 1 7.2047 2.1032 -0.0055 37 1 4.5479 -2.4493 -0.5020 38 1 5.6076 -1.0192 -0.5087 39 1 7.7324 -3.6931 0.8677 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067660347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:58 Heat of formation + Delta-G solvation = 53.665250 kcal Electronic energy + Delta-G solvation = -23370.048155 eV Core-core repulsion = 19892.482950 eV Total energy + Delta-G solvation = -3477.565204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.53859 -41.54497 -40.14310 -36.39958 -35.68939 -34.23091 -33.84557 -33.40047 -30.88847 -30.19434 -28.67708 -27.81763 -25.10270 -24.85397 -24.21842 -22.53141 -21.38352 -20.96735 -19.01371 -18.79892 -18.22999 -17.57340 -16.78741 -16.76148 -16.63584 -16.36915 -15.84062 -15.73424 -15.24961 -14.83913 -14.53485 -14.42028 -14.22981 -14.04914 -13.63698 -13.41412 -13.31423 -13.20879 -13.13816 -13.00344 -12.90966 -12.73498 -12.34525 -12.00919 -11.71378 -11.60600 -11.21603 -11.03196 -10.78397 -10.55050 -10.12391 -9.66210 -9.11889 -8.38783 -6.56229 -0.56713 0.13816 0.87030 1.23947 1.33489 1.36333 1.48259 1.66407 2.02103 2.11031 2.32256 2.70288 2.91715 3.03491 3.46837 3.65583 3.73161 3.80178 3.88116 4.20457 4.25033 4.51629 4.60338 4.68320 4.70863 4.78774 4.81034 4.82359 4.89995 4.91704 4.99340 5.05371 5.15559 5.19003 5.22798 5.49018 5.56089 5.74177 5.93434 6.04770 6.19143 6.53587 6.75199 6.82862 6.97753 7.16022 8.67972 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.005125 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.307892 B = 5462.536901 C = 7787.344320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.301 4.301 4 C 0.295 3.705 5 N -0.635 5.635 6 C 0.574 3.426 7 O -0.530 6.530 8 C -0.204 4.204 9 C -0.011 4.011 10 C -0.167 4.167 11 C 0.144 3.856 12 C -0.107 4.107 13 N -0.511 5.511 14 C 0.138 3.862 15 N -0.368 5.368 16 C 0.272 3.728 17 C -0.556 4.556 18 H 0.047 0.953 19 C 0.029 3.971 20 N -0.913 5.913 21 Si 0.967 3.033 22 H -0.277 1.277 23 H -0.273 1.273 24 H -0.266 1.266 25 N -0.327 5.327 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.171 0.829 30 H 0.419 0.581 31 H 0.161 0.839 32 H 0.185 0.815 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.158 0.842 37 H 0.029 0.971 38 H 0.046 0.954 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 19.915 -2.024 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.332 4.332 4 C 0.074 3.926 5 N -0.282 5.282 6 C 0.363 3.637 7 O -0.407 6.407 8 C -0.210 4.210 9 C -0.037 4.037 10 C -0.186 4.186 11 C 0.007 3.993 12 C -0.164 4.164 13 N -0.221 5.221 14 C -0.021 4.021 15 N -0.154 5.154 16 C 0.153 3.847 17 C -0.594 4.594 18 H 0.065 0.935 19 C -0.173 4.173 20 N -0.550 5.550 21 Si 0.792 3.208 22 H -0.201 1.201 23 H -0.199 1.199 24 H -0.191 1.191 25 N -0.151 5.151 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.188 0.812 30 H 0.257 0.743 31 H 0.179 0.821 32 H 0.202 0.798 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.093 0.907 36 H 0.175 0.825 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.677 18.446 -2.081 18.639 hybrid contribution 0.085 -0.116 0.724 0.738 sum 1.762 18.331 -1.358 18.465 Atomic orbital electron populations 1.20238 0.83723 1.04157 1.03780 1.22898 0.98820 0.89911 0.99008 1.21500 0.88851 1.00985 1.21893 1.18373 0.89256 0.82846 1.02170 1.42755 1.07850 1.05792 1.71787 1.18357 0.89611 0.80281 0.75424 1.90672 1.26872 1.73947 1.49164 1.20596 0.92740 0.95700 1.11932 1.21964 1.01479 0.90775 0.89492 1.22366 0.90866 1.03450 1.01937 1.22319 0.97453 0.89804 0.89696 1.20939 0.91995 0.98810 1.04627 1.67637 1.32774 1.07166 1.14483 1.23065 0.86981 1.00562 0.91443 1.49325 1.06330 1.02648 1.57100 1.19238 0.78611 0.89021 0.97848 1.21429 1.13757 1.32666 0.91584 0.93468 1.25663 0.95337 0.94278 1.02007 1.69989 1.19481 1.32696 1.32882 0.85366 0.78393 0.78311 0.78778 1.20133 1.19871 1.19058 1.77288 0.86341 1.23659 1.27858 0.89628 0.88446 0.90597 0.81159 0.74283 0.82145 0.79770 0.88520 0.87444 0.90736 0.82465 0.95257 0.93575 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.69 10.44 71.24 0.74 -0.94 16 2 C 0.06 2.37 7.20 43.07 0.31 2.68 16 3 C -0.30 -12.40 9.58 22.14 0.21 -12.18 16 4 C 0.30 12.91 7.68 131.18 1.01 13.92 16 5 N -0.63 -23.43 5.37 -310.82 -1.67 -25.10 16 6 C 0.57 19.01 7.74 86.77 0.67 19.68 16 7 O -0.53 -19.25 13.55 -3.95 -0.05 -19.30 16 8 C -0.20 -5.41 5.89 -19.99 -0.12 -5.53 16 9 C -0.01 -0.23 9.72 22.74 0.22 -0.01 16 10 C -0.17 -2.50 9.72 22.32 0.22 -2.29 16 11 C 0.14 2.63 6.78 42.57 0.29 2.92 16 12 C -0.11 -1.13 10.16 71.24 0.72 -0.40 16 13 N -0.51 -12.84 10.25 -182.80 -1.87 -14.72 16 14 C 0.14 3.66 10.71 85.03 0.91 4.57 16 15 N -0.37 -18.02 3.62 -348.33 -1.26 -19.28 16 16 C 0.27 14.23 6.02 85.63 0.52 14.75 16 17 C -0.56 -30.87 9.39 25.60 0.24 -30.63 16 18 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 19 C 0.03 1.56 5.46 84.65 0.46 2.02 16 20 N -0.91 -50.48 13.29 21.45 0.28 -50.20 16 21 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 N -0.33 -15.65 12.56 -47.47 -0.60 -16.25 16 26 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.17 6.67 5.83 -2.91 -0.02 6.65 16 30 H 0.42 14.58 6.06 -92.71 -0.56 14.02 16 31 H 0.16 2.88 7.74 -2.91 -0.02 2.86 16 32 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.11 0.52 8.07 -2.39 -0.02 0.50 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.16 4.13 6.42 -2.91 -0.02 4.11 16 37 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.05 2.34 7.52 -2.39 -0.02 2.32 16 39 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -71.09 340.67 3.79 -67.29 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.53 Total: 24.17 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.41 Total: 8.56 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -5.12 Total: -125.54 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -71.09 3.79 -67.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067660347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.960 kcal (2) G-P(sol) polarization free energy of solvation -71.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds