Wall clock time and date at job start Fri Apr 10 2020 20:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30876 * 126.20049 * 2 1 4 4 C 1.34575 * 107.28510 * 179.97438 * 3 2 1 5 5 C 1.47827 * 126.02050 * 180.02562 * 4 3 2 6 6 O 1.21565 * 120.00014 * 172.61030 * 5 4 3 7 7 N 1.34780 * 120.00500 * 352.61521 * 5 4 3 8 8 C 1.46502 * 119.99539 * 3.58781 * 7 5 4 9 9 C 1.46497 * 120.00279 * 183.59335 * 7 5 4 10 10 C 1.50701 * 109.47284 * 90.00119 * 9 7 5 11 11 H 1.08001 * 119.99350 * 359.97438 * 10 9 7 12 12 C 1.37872 * 120.00043 * 180.02562 * 10 9 7 13 13 N 1.31513 * 119.99934 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99860 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47615 * 59.99375 * 14 12 10 16 16 H 1.48506 * 109.47109 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46829 * 299.99316 * 14 12 10 18 18 N 1.31562 * 107.95328 * 359.76418 * 4 3 2 19 19 N 1.28855 * 108.70794 * 0.39176 * 18 4 3 20 20 C 1.40138 * 125.76933 * 179.87259 * 19 18 4 21 21 C 1.38850 * 120.06817 * 324.69467 * 20 19 18 22 22 C 1.38121 * 119.92986 * 179.97438 * 21 20 19 23 23 C 1.38275 * 120.06799 * 0.02562 * 22 21 20 24 24 C 1.38283 * 120.13952 * 359.97438 * 23 22 21 25 25 C 1.38115 * 120.06717 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47032 * 270.02583 * 1 2 3 27 27 H 1.09004 * 109.47096 * 30.02665 * 1 2 3 28 28 H 1.08996 * 109.46859 * 150.02423 * 1 2 3 29 29 H 1.09009 * 109.46902 * 83.95922 * 8 7 5 30 30 H 1.08997 * 109.47594 * 203.95252 * 8 7 5 31 31 H 1.09003 * 109.47678 * 323.96147 * 8 7 5 32 32 H 1.09000 * 109.46968 * 209.99699 * 9 7 5 33 33 H 1.08996 * 109.47271 * 329.99842 * 9 7 5 34 34 H 0.96999 * 119.99775 * 180.02562 * 13 12 10 35 35 H 1.07995 * 120.03355 * 359.97438 * 21 20 19 36 36 H 1.08005 * 119.96349 * 180.02562 * 22 21 20 37 37 H 1.08006 * 119.92850 * 179.72377 * 23 22 21 38 38 H 1.08002 * 119.96714 * 179.97438 * 24 23 22 39 39 H 1.07996 * 120.03751 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0561 0.0000 4 6 3.5531 0.6199 0.0006 5 6 4.7631 1.4691 0.0013 6 8 5.8603 0.9637 0.1372 7 7 4.6499 2.8038 -0.1485 8 6 3.3241 3.4214 -0.2333 9 6 5.8524 3.6367 -0.2268 10 6 6.2817 3.7653 -1.6656 11 1 5.7156 3.2751 -2.4438 12 6 7.3977 4.5078 -1.9884 13 7 8.0873 5.1042 -1.0406 14 14 7.9294 4.6677 -3.7719 15 1 6.8392 5.2980 -4.5589 16 1 9.1485 5.5120 -3.8512 17 1 8.2230 3.3205 -4.3236 18 7 3.5310 -0.6956 0.0061 19 7 2.3038 -1.0883 0.0005 20 6 1.8702 -2.4210 0.0012 21 6 2.5911 -3.3874 -0.6875 22 6 2.1615 -4.7001 -0.6845 23 6 1.0145 -5.0521 0.0029 24 6 0.2943 -4.0919 0.6897 25 6 0.7188 -2.7776 0.6905 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3633 -0.8902 -0.5134 29 1 2.9370 3.5903 0.7717 30 1 3.3997 4.3737 -0.7581 31 1 2.6490 2.7599 -0.7762 32 1 5.6363 4.6256 0.1776 33 1 6.6527 3.1748 0.3512 34 1 8.8723 5.6269 -1.2677 35 1 3.4868 -3.1130 -1.2249 36 1 2.7220 -5.4523 -1.2197 37 1 0.6781 -6.0784 0.0000 38 1 -0.6014 -4.3698 1.2253 39 1 0.1563 -2.0282 1.2274 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068306401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:02 Heat of formation + Delta-G solvation = 104.572269 kcal Electronic energy + Delta-G solvation = -23469.848224 eV Core-core repulsion = 19994.490514 eV Total energy + Delta-G solvation = -3475.357710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.61318 -39.64759 -38.57050 -34.93478 -34.54692 -33.39311 -32.51402 -31.38598 -30.16712 -28.26284 -27.78653 -25.91641 -24.66683 -23.52336 -22.84175 -21.85308 -20.88078 -18.98110 -18.22840 -16.88081 -16.81401 -16.41091 -16.16685 -15.37992 -15.15992 -14.82395 -14.46726 -14.26764 -14.04397 -13.91090 -13.51134 -13.27895 -12.98630 -12.67473 -12.50616 -12.24154 -12.06088 -11.93231 -11.66689 -11.37821 -11.11333 -10.93711 -10.75923 -10.52674 -10.18292 -9.93873 -9.66205 -9.57506 -9.49728 -9.21702 -8.83027 -8.38411 -7.57537 -5.99504 -4.04371 0.44216 0.83815 1.73798 2.10189 2.26685 3.22023 3.36649 3.40225 3.43709 3.64175 3.94590 4.05916 4.24761 4.38905 4.48542 4.51419 4.63671 4.83896 4.86158 5.02136 5.08637 5.14657 5.24753 5.34531 5.48954 5.50937 5.80185 5.82742 5.97602 6.03916 6.16028 6.23949 6.27600 6.35670 6.66005 6.77441 7.11150 7.47156 7.57407 7.95731 8.07993 8.26781 8.42443 8.90444 9.06938 9.60195 11.08569 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.024939 B = 0.003285 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.490403 B = 8522.299963 C = 9037.717597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.209 3.791 3 N -0.469 5.469 4 C 0.173 3.827 5 C 0.597 3.403 6 O -0.520 6.520 7 N -0.577 5.577 8 C 0.079 3.921 9 C 0.246 3.754 10 C -0.528 4.528 11 H 0.058 0.942 12 C 0.062 3.938 13 N -0.895 5.895 14 Si 0.900 3.100 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 N -0.260 5.260 19 N -0.261 5.261 20 C 0.131 3.869 21 C -0.097 4.097 22 C -0.102 4.102 23 C -0.113 4.113 24 C -0.102 4.102 25 C -0.119 4.119 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.936 -17.601 2.951 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.065 4.065 3 N -0.195 5.195 4 C -0.107 4.107 5 C 0.378 3.622 6 O -0.394 6.394 7 N -0.309 5.309 8 C -0.064 4.064 9 C 0.127 3.873 10 C -0.567 4.567 11 H 0.076 0.924 12 C -0.140 4.140 13 N -0.534 5.534 14 Si 0.727 3.273 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.202 1.202 18 N -0.094 5.094 19 N -0.050 5.050 20 C 0.040 3.960 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.121 4.121 25 C -0.140 4.140 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.619 -17.673 3.063 27.328 hybrid contribution 0.165 0.095 -0.990 1.008 sum -20.454 -17.577 2.073 27.048 Atomic orbital electron populations 1.20462 0.83405 1.05111 1.04213 1.25176 0.97541 0.82086 1.01660 1.71618 1.00715 1.26544 1.20657 1.24413 0.93230 0.88454 1.04604 1.16321 0.84417 0.82072 0.79383 1.90798 1.25584 1.72981 1.50011 1.47946 1.09566 1.05006 1.68356 1.22019 0.84099 0.99241 1.01063 1.19416 0.81029 0.89123 0.97722 1.21405 1.11437 1.31309 0.92549 0.92398 1.24923 0.95969 0.95388 0.97736 1.69927 1.18204 1.32973 1.32248 0.86536 0.77920 0.78120 0.84720 1.20210 1.21145 1.20169 1.74505 1.00278 1.14418 1.20224 1.44490 1.03863 1.06108 1.50545 1.17589 0.96850 0.80249 1.01265 1.21183 1.00046 0.92457 0.97960 1.21145 0.96584 0.95332 0.98981 1.21352 0.95032 0.99997 0.96773 1.21032 1.00206 0.91656 0.99209 1.21121 0.95921 0.97842 0.99066 0.89105 0.88178 0.89834 0.93737 0.91376 0.89465 0.94337 0.93508 0.92631 0.84330 0.84663 0.85085 0.84617 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 8.66 36.01 0.31 -0.23 16 2 C 0.21 2.83 7.79 -155.25 -1.21 1.62 16 3 N -0.47 -8.05 7.90 -8.47 -0.07 -8.12 16 4 C 0.17 3.61 7.64 -156.30 -1.19 2.41 16 5 C 0.60 14.71 7.68 -12.34 -0.09 14.62 16 6 O -0.52 -14.71 16.65 5.31 0.09 -14.62 16 7 N -0.58 -13.85 2.86 -184.08 -0.53 -14.37 16 8 C 0.08 1.52 9.59 59.85 0.57 2.09 16 9 C 0.25 6.80 5.16 -5.19 -0.03 6.77 16 10 C -0.53 -15.62 9.39 -34.44 -0.32 -15.94 16 11 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 12 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 13 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 14 Si 0.90 22.46 29.54 -169.99 -5.02 17.44 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 N -0.26 -5.05 11.77 32.08 0.38 -4.68 16 19 N -0.26 -3.90 3.47 -7.99 -0.03 -3.92 16 20 C 0.13 1.51 6.23 -83.60 -0.52 0.99 16 21 C -0.10 -1.04 9.71 -39.40 -0.38 -1.42 16 22 C -0.10 -0.77 10.04 -39.61 -0.40 -1.17 16 23 C -0.11 -0.67 10.04 -39.55 -0.40 -1.07 16 24 C -0.10 -0.60 10.04 -39.61 -0.40 -1.00 16 25 C -0.12 -0.94 8.25 -39.40 -0.33 -1.27 16 26 H 0.09 0.48 7.72 -51.93 -0.40 0.08 16 27 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.47 6.86 -51.93 -0.36 0.12 16 29 H 0.04 0.77 8.14 -51.92 -0.42 0.34 16 30 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 31 H 0.09 1.58 5.34 -51.93 -0.28 1.31 16 32 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 33 H 0.05 1.43 7.37 -51.93 -0.38 1.05 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.14 1.67 8.03 -52.49 -0.42 1.25 16 36 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 37 H 0.13 0.44 8.06 -52.48 -0.42 0.01 16 38 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 39 H 0.14 0.83 6.05 -52.49 -0.32 0.51 16 LS Contribution 336.50 15.07 5.07 5.07 Total: -1.00 -37.18 336.50 -8.50 -45.68 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -4.65 Total: -4.15 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -4.48 Total: 8.13 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.49 Total: -57.55 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.09 Total: -14.62 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.18 -8.50 -45.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068306401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.250 kcal (2) G-P(sol) polarization free energy of solvation -37.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds