Wall clock time and date at job start Fri Apr 10 2020 20:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30876 * 126.20049 * 2 1 4 4 C 1.34575 * 107.28510 * 179.97438 * 3 2 1 5 5 C 1.47827 * 126.02050 * 180.02562 * 4 3 2 6 6 O 1.21565 * 120.00014 * 172.61030 * 5 4 3 7 7 N 1.34780 * 120.00500 * 352.61521 * 5 4 3 8 8 C 1.46502 * 119.99539 * 3.58781 * 7 5 4 9 9 C 1.46497 * 120.00279 * 183.59335 * 7 5 4 10 10 C 1.50701 * 109.47284 * 90.00119 * 9 7 5 11 11 H 1.08001 * 119.99350 * 359.97438 * 10 9 7 12 12 C 1.37872 * 120.00043 * 180.02562 * 10 9 7 13 13 N 1.31513 * 119.99934 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99860 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47615 * 59.99375 * 14 12 10 16 16 H 1.48506 * 109.47109 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46829 * 299.99316 * 14 12 10 18 18 N 1.31562 * 107.95328 * 359.76418 * 4 3 2 19 19 N 1.28855 * 108.70794 * 0.39176 * 18 4 3 20 20 C 1.40138 * 125.76933 * 179.87259 * 19 18 4 21 21 C 1.38850 * 120.06817 * 324.69467 * 20 19 18 22 22 C 1.38121 * 119.92986 * 179.97438 * 21 20 19 23 23 C 1.38275 * 120.06799 * 0.02562 * 22 21 20 24 24 C 1.38283 * 120.13952 * 359.97438 * 23 22 21 25 25 C 1.38115 * 120.06717 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47032 * 270.02583 * 1 2 3 27 27 H 1.09004 * 109.47096 * 30.02665 * 1 2 3 28 28 H 1.08996 * 109.46859 * 150.02423 * 1 2 3 29 29 H 1.09009 * 109.46902 * 83.95922 * 8 7 5 30 30 H 1.08997 * 109.47594 * 203.95252 * 8 7 5 31 31 H 1.09003 * 109.47678 * 323.96147 * 8 7 5 32 32 H 1.09000 * 109.46968 * 209.99699 * 9 7 5 33 33 H 1.08996 * 109.47271 * 329.99842 * 9 7 5 34 34 H 0.96999 * 119.99775 * 180.02562 * 13 12 10 35 35 H 1.07995 * 120.03355 * 359.97438 * 21 20 19 36 36 H 1.08005 * 119.96349 * 180.02562 * 22 21 20 37 37 H 1.08006 * 119.92850 * 179.72377 * 23 22 21 38 38 H 1.08002 * 119.96714 * 179.97438 * 24 23 22 39 39 H 1.07996 * 120.03751 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0561 0.0000 4 6 3.5531 0.6199 0.0006 5 6 4.7631 1.4691 0.0013 6 8 5.8603 0.9637 0.1372 7 7 4.6499 2.8038 -0.1485 8 6 3.3241 3.4214 -0.2333 9 6 5.8524 3.6367 -0.2268 10 6 6.2817 3.7653 -1.6656 11 1 5.7156 3.2751 -2.4438 12 6 7.3977 4.5078 -1.9884 13 7 8.0873 5.1042 -1.0406 14 14 7.9294 4.6677 -3.7719 15 1 6.8392 5.2980 -4.5589 16 1 9.1485 5.5120 -3.8512 17 1 8.2230 3.3205 -4.3236 18 7 3.5310 -0.6956 0.0061 19 7 2.3038 -1.0883 0.0005 20 6 1.8702 -2.4210 0.0012 21 6 2.5911 -3.3874 -0.6875 22 6 2.1615 -4.7001 -0.6845 23 6 1.0145 -5.0521 0.0029 24 6 0.2943 -4.0919 0.6897 25 6 0.7188 -2.7776 0.6905 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3633 -0.8902 -0.5134 29 1 2.9370 3.5903 0.7717 30 1 3.3997 4.3737 -0.7581 31 1 2.6490 2.7599 -0.7762 32 1 5.6363 4.6256 0.1776 33 1 6.6527 3.1748 0.3512 34 1 8.8723 5.6269 -1.2677 35 1 3.4868 -3.1130 -1.2249 36 1 2.7220 -5.4523 -1.2197 37 1 0.6781 -6.0784 0.0000 38 1 -0.6014 -4.3698 1.2253 39 1 0.1563 -2.0282 1.2274 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068306401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:02 Heat of formation + Delta-G solvation = 80.553540 kcal Electronic energy + Delta-G solvation = -23470.889755 eV Core-core repulsion = 19994.490514 eV Total energy + Delta-G solvation = -3476.399240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.84448 -40.71288 -40.09009 -36.83742 -35.72787 -34.68593 -34.43017 -32.02059 -31.14784 -29.85402 -29.11952 -27.58429 -26.38200 -24.39252 -24.23983 -23.01493 -21.92131 -20.57900 -19.28405 -18.75126 -18.07012 -17.94426 -17.29918 -17.23183 -16.41165 -16.20856 -15.75964 -15.45389 -15.14691 -14.71183 -14.58130 -14.37911 -14.17694 -14.01833 -13.76397 -13.71817 -13.50646 -13.33867 -13.02106 -12.77493 -12.59860 -12.51152 -12.25001 -12.19893 -11.87706 -11.76330 -11.42905 -11.09401 -10.83816 -10.66724 -10.08316 -9.71208 -9.52280 -8.25620 -6.41209 -0.38399 0.26049 0.48396 1.01883 1.06288 1.35344 1.40331 1.47971 1.98275 2.22012 2.37954 2.62819 2.85857 3.03969 3.32977 3.46982 3.80700 3.84325 4.16601 4.27290 4.34551 4.46685 4.48730 4.57863 4.63011 4.64064 4.75013 4.90681 4.94383 4.95940 5.03313 5.15034 5.17111 5.28976 5.37413 5.44147 5.49245 5.62090 5.75141 5.90917 5.99171 6.44944 6.64764 6.82175 7.10375 7.30508 8.82063 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.024939 B = 0.003285 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.490403 B = 8522.299963 C = 9037.717597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.221 3.779 3 N -0.482 5.482 4 C 0.144 3.856 5 C 0.590 3.410 6 O -0.576 6.576 7 N -0.581 5.581 8 C 0.083 3.917 9 C 0.260 3.740 10 C -0.551 4.551 11 H 0.051 0.949 12 C 0.011 3.989 13 N -0.925 5.925 14 Si 0.971 3.029 15 H -0.259 1.259 16 H -0.273 1.273 17 H -0.279 1.279 18 N -0.288 5.288 19 N -0.252 5.252 20 C 0.086 3.914 21 C -0.124 4.124 22 C -0.105 4.105 23 C -0.099 4.099 24 C -0.092 4.092 25 C -0.111 4.111 26 H 0.123 0.877 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.037 0.963 33 H 0.004 0.996 34 H 0.270 0.730 35 H 0.107 0.893 36 H 0.152 0.848 37 H 0.167 0.833 38 H 0.177 0.823 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.085 -19.473 2.541 32.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.051 4.051 3 N -0.210 5.210 4 C -0.135 4.135 5 C 0.374 3.626 6 O -0.454 6.454 7 N -0.312 5.312 8 C -0.059 4.059 9 C 0.139 3.861 10 C -0.589 4.589 11 H 0.069 0.931 12 C -0.188 4.188 13 N -0.564 5.564 14 Si 0.795 3.205 15 H -0.183 1.183 16 H -0.197 1.197 17 H -0.205 1.205 18 N -0.126 5.126 19 N -0.042 5.042 20 C -0.003 4.003 21 C -0.144 4.144 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.110 4.110 25 C -0.131 4.131 26 H 0.141 0.859 27 H 0.131 0.869 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.055 0.945 33 H 0.023 0.977 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.170 0.830 37 H 0.185 0.815 38 H 0.194 0.806 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -24.838 -19.542 2.656 31.715 hybrid contribution 1.299 0.443 -0.790 1.584 sum -23.538 -19.099 1.866 30.369 Atomic orbital electron populations 1.20863 0.78511 1.06921 1.06744 1.26283 0.99604 0.80610 0.98652 1.71459 0.99254 1.28257 1.22002 1.23461 0.93195 0.88611 1.08280 1.16784 0.85237 0.82392 0.78150 1.90733 1.28134 1.74072 1.52456 1.47942 1.10252 1.04992 1.67988 1.22207 0.81838 0.99213 1.02650 1.18968 0.81637 0.88934 0.96514 1.21618 1.12328 1.31949 0.93034 0.93110 1.25865 0.95634 0.94607 1.02738 1.70039 1.18565 1.33217 1.34601 0.85421 0.78283 0.78055 0.78763 1.18315 1.19750 1.20499 1.74370 1.03462 1.14041 1.20704 1.44723 1.02517 1.07930 1.48997 1.18094 0.99087 0.78745 1.04332 1.21165 0.99748 0.94247 0.99195 1.21396 0.97580 0.94055 0.99331 1.21838 0.93443 1.01854 0.94562 1.21553 1.00939 0.90342 0.98137 1.21446 0.94243 0.99505 0.97876 0.85923 0.86940 0.87391 0.91622 0.91087 0.88112 0.94510 0.97745 0.92109 0.87479 0.83046 0.81527 0.80551 0.82306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 8.66 71.24 0.62 -0.17 16 2 C 0.22 5.72 7.79 138.07 1.08 6.79 16 3 N -0.48 -16.60 7.90 -180.71 -1.43 -18.03 16 4 C 0.14 6.29 7.64 137.09 1.05 7.33 16 5 C 0.59 31.22 7.68 86.78 0.67 31.89 16 6 O -0.58 -35.46 16.65 -3.92 -0.07 -35.53 16 7 N -0.58 -29.46 2.86 -854.57 -2.44 -31.90 16 8 C 0.08 3.21 9.59 127.77 1.23 4.44 16 9 C 0.26 15.27 5.16 85.63 0.44 15.71 16 10 C -0.55 -33.93 9.39 25.60 0.24 -33.69 16 11 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 12 C 0.01 0.67 5.46 84.65 0.46 1.13 16 13 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 14 Si 0.97 46.72 29.54 68.60 2.03 48.75 16 15 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 18 N -0.29 -11.88 11.77 -52.42 -0.62 -12.50 16 19 N -0.25 -7.58 3.47 -179.20 -0.62 -8.20 16 20 C 0.09 1.91 6.23 38.11 0.24 2.15 16 21 C -0.12 -2.72 9.71 22.39 0.22 -2.50 16 22 C -0.11 -1.40 10.04 22.25 0.22 -1.18 16 23 C -0.10 -0.73 10.04 22.29 0.22 -0.51 16 24 C -0.09 -0.59 10.04 22.25 0.22 -0.37 16 25 C -0.11 -1.34 8.25 22.39 0.18 -1.16 16 26 H 0.12 0.66 7.72 -2.39 -0.02 0.64 16 27 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.11 0.71 6.86 -2.39 -0.02 0.69 16 29 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.07 2.68 8.03 -2.39 -0.02 2.66 16 31 H 0.10 3.68 5.34 -2.39 -0.01 3.66 16 32 H 0.04 2.13 8.07 -2.39 -0.02 2.11 16 33 H 0.00 0.29 7.37 -2.39 -0.02 0.28 16 34 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 35 H 0.11 2.92 8.03 -2.91 -0.02 2.90 16 36 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 37 H 0.17 0.11 8.06 -2.91 -0.02 0.09 16 38 H 0.18 -0.19 8.06 -2.91 -0.02 -0.22 16 39 H 0.16 1.14 6.05 -2.91 -0.02 1.12 16 Total: -1.00 -89.20 336.50 5.30 -83.90 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: 1.07 Total: 1.07 kcal Atomic # 6 Polarization: 22.79 SS G_CDS: 7.09 Total: 29.88 kcal Atomic # 7 Polarization: -123.25 SS G_CDS: -4.82 Total: -128.08 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -0.07 Total: -35.53 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -89.20 5.30 -83.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068306401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.453 kcal (2) G-P(sol) polarization free energy of solvation -89.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds