Wall clock time and date at job start Fri Apr 10 2020 20:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46943 * 241.40234 * 3 2 1 5 5 N 1.46507 * 109.46925 * 180.02562 * 4 3 2 6 6 C 1.46493 * 119.99860 * 274.93323 * 5 4 3 7 7 C 1.50693 * 109.47353 * 262.94182 * 6 5 4 8 8 H 1.07998 * 120.00100 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00492 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99275 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00154 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47592 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47053 * 120.00184 * 11 9 7 14 14 H 1.48500 * 109.47413 * 239.99887 * 11 9 7 15 15 C 1.34779 * 119.99821 * 94.93472 * 5 4 3 16 16 O 1.21485 * 119.99803 * 3.48710 * 15 5 4 17 17 C 1.48449 * 119.99861 * 183.49227 * 15 5 4 18 18 C 1.39540 * 120.54814 * 173.45556 * 17 15 5 19 19 C 1.38760 * 118.26386 * 180.02562 * 18 17 15 20 20 N 1.32213 * 119.14308 * 359.74841 * 19 18 17 21 21 C 1.31879 * 121.03945 * 0.51194 * 20 19 18 22 22 C 1.50695 * 119.04308 * 179.76094 * 21 20 19 23 23 C 1.53004 * 117.50091 * 59.72047 * 22 21 20 24 24 C 1.53000 * 60.03147 * 252.47857 * 23 22 21 25 25 N 1.31586 * 121.91376 * 359.47156 * 21 20 19 26 26 H 1.08993 * 109.46791 * 121.40168 * 3 2 1 27 27 H 1.09000 * 109.47263 * 1.40298 * 3 2 1 28 28 H 1.09006 * 109.47455 * 60.00592 * 4 3 2 29 29 H 1.09000 * 109.47194 * 300.00107 * 4 3 2 30 30 H 1.09003 * 109.47528 * 22.94834 * 6 5 4 31 31 H 1.09002 * 109.46789 * 142.94582 * 6 5 4 32 32 H 0.97003 * 119.99439 * 179.97438 * 10 9 7 33 33 H 1.07994 * 120.86914 * 0.03682 * 18 17 15 34 34 H 1.07997 * 120.42917 * 180.02562 * 19 18 17 35 35 H 1.08996 * 115.55006 * 205.39899 * 22 21 20 36 36 H 1.09000 * 117.49763 * 359.97438 * 23 22 21 37 37 H 1.09003 * 117.49586 * 144.97867 * 23 22 21 38 38 H 1.09002 * 117.49910 * 107.50641 * 24 23 22 39 39 H 1.09006 * 117.49764 * 252.52154 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.6913 1.2665 5 7 4.5827 0.6925 1.2662 6 6 5.3162 -0.4689 1.7751 7 6 5.7187 -0.2214 3.2061 8 1 5.4541 0.7079 3.6884 9 6 6.4247 -1.1815 3.8997 10 7 6.7463 -2.3134 3.3125 11 14 6.9228 -0.8749 5.6737 12 1 6.4422 0.4644 6.0985 13 1 6.3196 -1.9158 6.5442 14 1 8.4023 -0.9298 5.7890 15 6 5.2556 1.7623 0.7978 16 8 4.6489 2.7502 0.4348 17 6 6.7380 1.7332 0.7252 18 6 7.4390 2.7759 0.1182 19 6 8.8239 2.6998 0.0763 20 7 9.4278 1.6532 0.6130 21 6 8.7344 0.6822 1.1749 22 6 9.4687 -0.4925 1.7680 23 6 10.4663 -0.2074 2.8925 24 6 10.9726 -0.5947 1.5016 25 7 7.4204 0.7121 1.2376 26 1 2.9710 0.5362 -0.8771 27 1 2.9718 -1.0265 -0.0252 28 1 2.7546 0.1557 2.1437 29 1 2.7538 1.7185 1.2917 30 1 4.6791 -1.3519 1.7244 31 1 6.2082 -0.6292 1.1694 32 1 7.2433 -2.9887 3.8003 33 1 6.9174 3.6201 -0.3077 34 1 9.4013 3.4875 -0.3846 35 1 8.9027 -1.4225 1.8210 36 1 10.5919 0.8298 3.2029 37 1 10.5564 -0.9498 3.6855 38 1 11.4312 0.1878 0.8970 39 1 11.3954 -1.5920 1.3795 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069696300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:06 Heat of formation + Delta-G solvation = 88.627279 kcal Electronic energy + Delta-G solvation = -24345.152119 eV Core-core repulsion = 20869.102983 eV Total energy + Delta-G solvation = -3476.049137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.91108 -39.08484 -36.79098 -36.49691 -35.38745 -33.56287 -32.64886 -31.41058 -30.94063 -27.18623 -25.75526 -24.58021 -23.65502 -22.89175 -21.97947 -21.07154 -18.92964 -17.69523 -17.36348 -16.89308 -16.37923 -15.58284 -15.44807 -15.16773 -14.83442 -14.66837 -14.46861 -14.20999 -13.85094 -13.59452 -13.45209 -12.92798 -12.44651 -12.33550 -12.15573 -11.89327 -11.72408 -11.39486 -11.20627 -10.97657 -10.89192 -10.71291 -10.50143 -10.31817 -10.27205 -10.16854 -10.05044 -9.82174 -9.63523 -8.90636 -8.58612 -8.22197 -7.85385 -6.08566 -4.07109 0.93811 1.35301 2.79680 2.90706 3.20517 3.23715 3.32683 3.37398 3.47155 4.03195 4.10842 4.26619 4.38146 4.39776 4.63060 4.90344 5.16369 5.23450 5.27417 5.28390 5.29995 5.37164 5.44264 5.48624 5.61072 5.86237 5.92909 5.98086 6.06638 6.17752 6.18549 6.48935 6.57479 6.61706 6.77083 7.26233 7.43121 7.59203 7.66750 7.82405 8.07313 8.19227 8.45738 8.67393 8.92637 9.53486 10.99512 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.006254 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.700603 B = 4476.326943 C = 6031.111702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.221 3.779 3 C -0.044 4.044 4 C 0.120 3.880 5 N -0.571 5.571 6 C 0.223 3.777 7 C -0.501 4.501 8 H 0.050 0.950 9 C 0.077 3.923 10 N -0.885 5.885 11 Si 0.878 3.122 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.281 1.281 15 C 0.568 3.432 16 O -0.559 6.559 17 C 0.134 3.866 18 C -0.189 4.189 19 C 0.133 3.867 20 N -0.514 5.514 21 C 0.339 3.661 22 C -0.083 4.083 23 C -0.155 4.155 24 C -0.164 4.164 25 N -0.409 5.409 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.030 0.970 31 H 0.087 0.913 32 H 0.260 0.740 33 H 0.151 0.849 34 H 0.167 0.833 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.900 3.724 -6.124 9.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.097 4.097 3 C -0.086 4.086 4 C -0.005 4.005 5 N -0.299 5.299 6 C 0.104 3.896 7 C -0.540 4.540 8 H 0.069 0.931 9 C -0.125 4.125 10 N -0.525 5.525 11 Si 0.707 3.293 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.207 1.207 15 C 0.354 3.646 16 O -0.439 6.439 17 C -0.014 4.014 18 C -0.212 4.212 19 C -0.034 4.034 20 N -0.229 5.229 21 C 0.073 3.927 22 C -0.103 4.103 23 C -0.193 4.193 24 C -0.202 4.202 25 N -0.124 5.124 26 H 0.126 0.874 27 H 0.133 0.867 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.169 0.831 34 H 0.184 0.816 35 H 0.164 0.836 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.400 3.258 -5.867 8.025 hybrid contribution 0.314 0.851 0.895 1.274 sum 4.714 4.110 -4.973 7.990 Atomic orbital electron populations 1.81186 1.13042 1.09448 1.08909 1.29066 0.95075 0.92649 0.92912 1.19751 0.81402 1.05238 1.02181 1.21246 0.81298 1.02045 0.95950 1.48266 1.05307 1.18599 1.57731 1.20265 0.92877 0.80634 0.95790 1.21225 1.34625 1.02144 0.96049 0.93128 1.24646 0.95578 0.95041 0.97269 1.69904 1.39596 1.06543 1.36426 0.86754 0.78576 0.78113 0.85878 1.20229 1.21200 1.20735 1.17837 0.85391 0.83173 0.78164 1.90703 1.68584 1.33040 1.51575 1.21627 0.95295 0.90881 0.93638 1.22818 0.96221 1.00649 1.01491 1.23077 0.91598 0.94987 0.93750 1.67982 1.42389 1.02312 1.10169 1.22385 0.86966 0.92414 0.90927 1.20729 0.90537 0.96594 1.02456 1.22852 1.02184 1.02341 0.91971 1.22998 0.95138 1.02777 0.99268 1.69272 1.07798 1.22750 1.12549 0.87410 0.86727 0.89085 0.89537 0.95238 0.89578 0.93062 0.83145 0.81625 0.83592 0.89230 0.88444 0.87833 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.26 18.54 42.15 0.78 -6.48 16 2 C 0.22 3.05 15.43 -20.76 -0.32 2.73 16 3 C -0.04 -0.54 6.02 -29.52 -0.18 -0.72 16 4 C 0.12 1.83 5.41 -4.04 -0.02 1.81 16 5 N -0.57 -10.56 2.48 -175.95 -0.44 -10.99 16 6 C 0.22 4.73 4.79 -5.20 -0.02 4.71 16 7 C -0.50 -12.08 8.05 -34.44 -0.28 -12.36 16 8 H 0.05 1.30 7.81 -52.49 -0.41 0.89 16 9 C 0.08 1.88 5.46 -17.82 -0.10 1.78 16 10 N -0.89 -21.88 13.29 55.43 0.74 -21.14 16 11 Si 0.88 19.89 29.54 -169.99 -5.02 14.87 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 15 C 0.57 10.84 7.61 -12.05 -0.09 10.75 16 16 O -0.56 -11.07 15.93 5.38 0.09 -10.98 16 17 C 0.13 2.49 6.65 -82.64 -0.55 1.94 16 18 C -0.19 -2.86 9.72 -38.90 -0.38 -3.24 16 19 C 0.13 1.82 11.31 -17.19 -0.19 1.63 16 20 N -0.51 -8.32 9.33 -10.74 -0.10 -8.42 16 21 C 0.34 6.22 7.31 -157.30 -1.15 5.07 16 22 C -0.08 -1.46 6.23 -91.73 -0.57 -2.03 16 23 C -0.16 -2.44 10.23 -26.73 -0.27 -2.71 16 24 C -0.16 -2.29 10.01 -26.69 -0.27 -2.55 16 25 N -0.41 -8.11 5.14 -7.32 -0.04 -8.14 16 26 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 29 H 0.09 1.34 7.24 -51.93 -0.38 0.97 16 30 H 0.03 0.65 8.02 -51.93 -0.42 0.23 16 31 H 0.09 1.93 5.22 -52.02 -0.27 1.66 16 32 H 0.26 6.22 8.31 -40.82 -0.34 5.89 16 33 H 0.15 1.99 7.75 -52.49 -0.41 1.59 16 34 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.15 2.87 8.14 -51.93 -0.42 2.44 16 36 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.10 1.40 7.54 -51.93 -0.39 1.01 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -28.12 346.71 -7.95 -36.07 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -4.79 Total: 3.19 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -4.40 Total: 6.81 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.94 Total: -55.18 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.12 -7.95 -36.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069696300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.694 kcal (2) G-P(sol) polarization free energy of solvation -28.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds