Wall clock time and date at job start Fri Apr 10 2020 20:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46943 * 241.40234 * 3 2 1 5 5 N 1.46507 * 109.46925 * 180.02562 * 4 3 2 6 6 C 1.46493 * 119.99860 * 274.93323 * 5 4 3 7 7 C 1.50693 * 109.47353 * 262.94182 * 6 5 4 8 8 H 1.07998 * 120.00100 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00492 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99275 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00154 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47592 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47053 * 120.00184 * 11 9 7 14 14 H 1.48500 * 109.47413 * 239.99887 * 11 9 7 15 15 C 1.34779 * 119.99821 * 94.93472 * 5 4 3 16 16 O 1.21485 * 119.99803 * 3.48710 * 15 5 4 17 17 C 1.48449 * 119.99861 * 183.49227 * 15 5 4 18 18 C 1.39540 * 120.54814 * 173.45556 * 17 15 5 19 19 C 1.38760 * 118.26386 * 180.02562 * 18 17 15 20 20 N 1.32213 * 119.14308 * 359.74841 * 19 18 17 21 21 C 1.31879 * 121.03945 * 0.51194 * 20 19 18 22 22 C 1.50695 * 119.04308 * 179.76094 * 21 20 19 23 23 C 1.53004 * 117.50091 * 59.72047 * 22 21 20 24 24 C 1.53000 * 60.03147 * 252.47857 * 23 22 21 25 25 N 1.31586 * 121.91376 * 359.47156 * 21 20 19 26 26 H 1.08993 * 109.46791 * 121.40168 * 3 2 1 27 27 H 1.09000 * 109.47263 * 1.40298 * 3 2 1 28 28 H 1.09006 * 109.47455 * 60.00592 * 4 3 2 29 29 H 1.09000 * 109.47194 * 300.00107 * 4 3 2 30 30 H 1.09003 * 109.47528 * 22.94834 * 6 5 4 31 31 H 1.09002 * 109.46789 * 142.94582 * 6 5 4 32 32 H 0.97003 * 119.99439 * 179.97438 * 10 9 7 33 33 H 1.07994 * 120.86914 * 0.03682 * 18 17 15 34 34 H 1.07997 * 120.42917 * 180.02562 * 19 18 17 35 35 H 1.08996 * 115.55006 * 205.39899 * 22 21 20 36 36 H 1.09000 * 117.49763 * 359.97438 * 23 22 21 37 37 H 1.09003 * 117.49586 * 144.97867 * 23 22 21 38 38 H 1.09002 * 117.49910 * 107.50641 * 24 23 22 39 39 H 1.09006 * 117.49764 * 252.52154 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.6913 1.2665 5 7 4.5827 0.6925 1.2662 6 6 5.3162 -0.4689 1.7751 7 6 5.7187 -0.2214 3.2061 8 1 5.4541 0.7079 3.6884 9 6 6.4247 -1.1815 3.8997 10 7 6.7463 -2.3134 3.3125 11 14 6.9228 -0.8749 5.6737 12 1 6.4422 0.4644 6.0985 13 1 6.3196 -1.9158 6.5442 14 1 8.4023 -0.9298 5.7890 15 6 5.2556 1.7623 0.7978 16 8 4.6489 2.7502 0.4348 17 6 6.7380 1.7332 0.7252 18 6 7.4390 2.7759 0.1182 19 6 8.8239 2.6998 0.0763 20 7 9.4278 1.6532 0.6130 21 6 8.7344 0.6822 1.1749 22 6 9.4687 -0.4925 1.7680 23 6 10.4663 -0.2074 2.8925 24 6 10.9726 -0.5947 1.5016 25 7 7.4204 0.7121 1.2376 26 1 2.9710 0.5362 -0.8771 27 1 2.9718 -1.0265 -0.0252 28 1 2.7546 0.1557 2.1437 29 1 2.7538 1.7185 1.2917 30 1 4.6791 -1.3519 1.7244 31 1 6.2082 -0.6292 1.1694 32 1 7.2433 -2.9887 3.8003 33 1 6.9174 3.6201 -0.3077 34 1 9.4013 3.4875 -0.3846 35 1 8.9027 -1.4225 1.8210 36 1 10.5919 0.8298 3.2029 37 1 10.5564 -0.9498 3.6855 38 1 11.4312 0.1878 0.8970 39 1 11.3954 -1.5920 1.3795 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069696300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:05 Heat of formation + Delta-G solvation = 74.961479 kcal Electronic energy + Delta-G solvation = -24345.744713 eV Core-core repulsion = 20869.102983 eV Total energy + Delta-G solvation = -3476.641730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.21397 -40.50048 -38.02268 -37.73067 -36.86370 -34.88126 -34.38726 -32.68652 -32.24746 -28.91540 -27.03751 -25.85682 -25.09507 -24.45774 -23.15377 -22.35523 -20.33023 -19.02605 -18.64268 -18.33204 -18.02035 -16.98677 -16.76855 -16.40923 -16.26180 -16.16874 -15.81784 -15.53982 -15.11552 -14.83306 -14.73024 -14.31656 -14.13154 -13.60717 -13.57916 -13.31182 -13.04986 -12.89712 -12.70353 -12.55038 -12.33506 -12.11940 -11.82807 -11.74024 -11.63922 -11.57936 -11.51337 -11.34642 -11.16148 -10.38427 -10.13456 -9.70562 -9.37862 -7.97081 -5.98842 -0.38022 0.15428 1.40123 1.46399 1.51082 1.60609 1.77681 1.81548 2.14099 2.52722 2.76805 2.84981 3.08216 3.18906 3.35270 3.40448 3.62157 3.92918 4.07162 4.08563 4.11629 4.16419 4.26317 4.32483 4.52552 4.68755 4.74612 4.81864 4.86884 4.98501 5.03180 5.06229 5.29090 5.36673 5.47309 5.64790 5.91376 5.97710 6.11185 6.36317 6.48635 6.53897 6.99373 7.12801 7.30168 7.63380 9.09871 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.006254 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.700603 B = 4476.326943 C = 6031.111702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.029 4.029 4 C 0.117 3.883 5 N -0.573 5.573 6 C 0.240 3.760 7 C -0.504 4.504 8 H 0.027 0.973 9 C 0.052 3.948 10 N -0.897 5.897 11 Si 0.914 3.086 12 H -0.290 1.290 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.565 3.435 16 O -0.570 6.570 17 C 0.105 3.895 18 C -0.179 4.179 19 C 0.148 3.852 20 N -0.514 5.514 21 C 0.325 3.675 22 C -0.109 4.109 23 C -0.159 4.159 24 C -0.129 4.129 25 N -0.443 5.443 26 H 0.124 0.876 27 H 0.130 0.870 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.022 0.978 31 H 0.080 0.920 32 H 0.260 0.740 33 H 0.172 0.828 34 H 0.218 0.782 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.410 4.653 -7.242 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.071 4.071 3 C -0.070 4.070 4 C -0.008 4.008 5 N -0.301 5.301 6 C 0.120 3.880 7 C -0.543 4.543 8 H 0.046 0.954 9 C -0.149 4.149 10 N -0.537 5.537 11 Si 0.742 3.258 12 H -0.215 1.215 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.352 3.648 16 O -0.451 6.451 17 C -0.043 4.043 18 C -0.202 4.202 19 C -0.020 4.020 20 N -0.229 5.229 21 C 0.059 3.941 22 C -0.129 4.129 23 C -0.197 4.197 24 C -0.167 4.167 25 N -0.158 5.158 26 H 0.142 0.858 27 H 0.148 0.852 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.040 0.960 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.189 0.811 34 H 0.234 0.766 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.891 4.178 -6.981 10.044 hybrid contribution -0.107 0.659 1.221 1.391 sum 5.784 4.836 -5.760 9.488 Atomic orbital electron populations 1.81214 1.14245 1.10909 1.10212 1.29152 0.95002 0.91336 0.91657 1.19665 0.80193 1.05977 1.01133 1.21337 0.79691 1.02306 0.97442 1.48182 1.06398 1.17905 1.57610 1.19879 0.92692 0.81137 0.94250 1.21241 1.34639 1.01018 0.97443 0.95442 1.24972 0.95813 0.95160 0.98970 1.69941 1.40051 1.06798 1.36938 0.86219 0.78587 0.77110 0.83842 1.21536 1.21179 1.20073 1.18042 0.85987 0.82933 0.77829 1.90681 1.69012 1.33146 1.52237 1.21761 0.95091 0.92162 0.95264 1.23106 0.96942 0.99988 1.00144 1.23922 0.91391 0.94850 0.91813 1.68055 1.42127 1.02545 1.10142 1.22488 0.86692 0.93301 0.91586 1.20630 0.92061 0.95619 1.04635 1.22863 1.02010 1.02209 0.92658 1.23064 0.92180 1.04063 0.97368 1.69111 1.08827 1.23962 1.13886 0.85760 0.85216 0.89415 0.89768 0.95971 0.90278 0.93039 0.81058 0.76551 0.86425 0.89458 0.88588 0.86897 0.86692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.52 18.54 20.01 0.37 -15.15 16 2 C 0.25 6.53 15.43 89.44 1.38 7.91 16 3 C -0.03 -0.67 6.02 28.79 0.17 -0.49 16 4 C 0.12 3.52 5.41 86.38 0.47 3.99 16 5 N -0.57 -21.21 2.48 -828.88 -2.05 -23.26 16 6 C 0.24 10.35 4.79 85.63 0.41 10.76 16 7 C -0.50 -24.78 8.05 25.60 0.21 -24.57 16 8 H 0.03 1.45 7.81 -2.91 -0.02 1.43 16 9 C 0.05 2.55 5.46 84.66 0.46 3.02 16 10 N -0.90 -44.87 13.29 21.45 0.28 -44.58 16 11 Si 0.91 41.11 29.54 68.60 2.03 43.13 16 12 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 13 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 15 C 0.57 21.35 7.61 86.97 0.66 22.01 16 16 O -0.57 -22.02 15.93 -3.67 -0.06 -22.08 16 17 C 0.10 3.80 6.65 41.99 0.28 4.08 16 18 C -0.18 -4.99 9.72 22.71 0.22 -4.77 16 19 C 0.15 3.53 11.31 84.76 0.96 4.49 16 20 N -0.51 -15.45 9.33 -187.89 -1.75 -17.20 16 21 C 0.33 11.73 7.31 138.79 1.01 12.75 16 22 C -0.11 -3.79 6.23 -11.52 -0.07 -3.86 16 23 C -0.16 -4.87 10.23 30.60 0.31 -4.56 16 24 C -0.13 -3.35 10.01 30.62 0.31 -3.05 16 25 N -0.44 -17.58 5.14 -177.08 -0.91 -18.49 16 26 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.09 2.69 8.11 -2.38 -0.02 2.67 16 29 H 0.08 2.59 7.24 -2.39 -0.02 2.57 16 30 H 0.02 0.98 8.02 -2.39 -0.02 0.96 16 31 H 0.08 3.63 5.22 -2.56 -0.01 3.61 16 32 H 0.26 12.58 8.31 -92.71 -0.77 11.81 16 33 H 0.17 4.00 7.75 -2.91 -0.02 3.97 16 34 H 0.22 2.88 8.06 -2.91 -0.02 2.85 16 35 H 0.12 4.75 8.14 -2.39 -0.02 4.73 16 36 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.11 2.74 7.54 -2.39 -0.02 2.72 16 39 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 Total: -1.00 -61.25 346.71 5.77 -55.49 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.08 Total: 14.44 kcal Atomic # 6 Polarization: 20.92 SS G_CDS: 6.78 Total: 27.70 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -4.06 Total: -118.68 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.06 Total: -22.08 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Total: -61.25 5.77 -55.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069696300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.449 kcal (2) G-P(sol) polarization free energy of solvation -61.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds