Wall clock time and date at job start Fri Apr 10 2020 20:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34267 * 126.28688 * 2 1 4 4 H 0.96995 * 125.75969 * 0.02562 * 3 2 1 5 5 N 1.39943 * 108.48609 * 180.02562 * 3 2 1 6 6 C 1.30439 * 108.89945 * 0.02562 * 5 3 2 7 7 C 1.38041 * 126.29447 * 179.69339 * 2 1 3 8 8 C 1.47432 * 126.41508 * 359.97438 * 7 2 1 9 9 O 1.21605 * 119.99851 * 315.91470 * 8 7 2 10 10 N 1.34775 * 120.00051 * 135.90745 * 8 7 2 11 11 C 1.46504 * 119.99964 * 5.06722 * 10 8 7 12 12 C 1.50702 * 109.46837 * 95.45459 * 11 10 8 13 13 H 1.08001 * 120.00352 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00099 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00219 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99901 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47080 * 90.00083 * 16 14 12 18 18 H 1.48494 * 109.47199 * 209.99934 * 16 14 12 19 19 H 1.48493 * 109.47068 * 330.00233 * 16 14 12 20 20 C 1.46498 * 119.99954 * 185.06924 * 10 8 7 21 21 C 1.50695 * 109.47185 * 90.00096 * 20 10 8 22 22 C 1.38681 * 120.42092 * 269.71803 * 21 20 10 23 23 C 1.38621 * 118.42098 * 179.78319 * 22 21 20 24 24 C 1.38230 * 119.16260 * 0.51840 * 23 22 21 25 25 N 1.31852 * 120.76216 * 359.72122 * 24 23 22 26 26 C 1.31884 * 121.72648 * 0.02562 * 25 24 23 27 27 H 1.08995 * 109.47350 * 90.02430 * 1 2 3 28 28 H 1.09003 * 109.47303 * 330.01997 * 1 2 3 29 29 H 1.09007 * 109.46586 * 210.02512 * 1 2 3 30 30 H 1.08001 * 125.99148 * 180.02562 * 6 5 3 31 31 H 1.08993 * 109.47337 * 215.45287 * 11 10 8 32 32 H 1.08993 * 109.47069 * 335.45459 * 11 10 8 33 33 H 0.97006 * 120.00180 * 180.02562 * 15 14 12 34 34 H 1.08996 * 109.46938 * 210.00198 * 20 10 8 35 35 H 1.09005 * 109.46861 * 329.99801 * 20 10 8 36 36 H 1.07997 * 120.78406 * 0.02562 * 22 21 20 37 37 H 1.07998 * 120.41977 * 180.22686 * 23 22 21 38 38 H 1.08000 * 119.62176 * 179.75125 * 24 23 22 39 39 H 1.08004 * 119.61658 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3016 1.0823 0.0000 4 1 2.0026 2.0050 0.0004 5 7 3.6341 0.6545 -0.0006 6 6 3.6591 -0.6497 -0.0015 7 6 2.3241 -1.1126 0.0060 8 6 1.8859 -2.5202 0.0140 9 8 0.9832 -2.8718 0.7490 10 7 2.4857 -3.4174 -0.7933 11 6 3.6447 -3.0200 -1.5966 12 6 4.9112 -3.3842 -0.8655 13 1 4.8581 -3.8640 0.1006 14 6 6.1377 -3.1049 -1.4299 15 7 7.2429 -3.4231 -0.7922 16 14 6.2295 -2.2756 -3.1013 17 1 6.2546 -0.8017 -2.9219 18 1 7.4645 -2.7100 -3.8022 19 1 5.0425 -2.6558 -3.9084 20 6 1.9788 -4.7898 -0.8677 21 6 0.9397 -4.8833 -1.9551 22 6 -0.3987 -4.6602 -1.6685 23 6 -1.3188 -4.7525 -2.7012 24 6 -0.8763 -5.0722 -3.9711 25 7 0.4040 -5.2827 -4.2060 26 6 1.3077 -5.1986 -3.2492 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3634 0.8902 0.5135 29 1 -0.3633 -0.8898 0.5143 30 1 4.5449 -1.2675 -0.0017 31 1 3.6170 -3.5378 -2.5553 32 1 3.6187 -1.9434 -1.7642 33 1 8.1059 -3.2262 -1.1892 34 1 2.8011 -5.4693 -1.0915 35 1 1.5308 -5.0639 0.0876 36 1 -0.7160 -4.4165 -0.6654 37 1 -2.3688 -4.5814 -2.5150 38 1 -1.5872 -5.1500 -4.7803 39 1 2.3475 -5.3774 -3.4799 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070983582.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:09 Heat of formation + Delta-G solvation = 75.930502 kcal Electronic energy + Delta-G solvation = -24511.345264 eV Core-core repulsion = 21034.745553 eV Total energy + Delta-G solvation = -3476.599710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04480 -40.04658 -38.53450 -35.35266 -33.16196 -32.34660 -32.19315 -31.55485 -30.59718 -28.17539 -27.36141 -25.82545 -23.42592 -22.73434 -22.32128 -21.32656 -20.84208 -18.20836 -17.27082 -17.14748 -16.79193 -16.16932 -15.72243 -15.42382 -15.16243 -14.69269 -14.25466 -13.89122 -13.87940 -13.60348 -13.17116 -13.09355 -12.84352 -12.75448 -12.60622 -12.41491 -12.10143 -11.79299 -11.64041 -11.24891 -11.05087 -10.69626 -10.48913 -10.30484 -9.74563 -9.63600 -9.33802 -9.29281 -9.18560 -8.82464 -8.74483 -8.23893 -7.82108 -6.26696 -4.29451 1.22984 1.45140 1.93538 2.81416 3.05642 3.19650 3.26731 3.30110 3.62044 3.85364 4.17021 4.24690 4.59849 4.83980 4.95868 5.02281 5.10246 5.13877 5.15522 5.22107 5.29545 5.49833 5.55257 5.71527 5.84635 5.93342 6.00488 6.03933 6.17749 6.28276 6.30905 6.41103 6.55070 6.69960 6.86437 7.06050 7.27027 7.40664 7.45452 7.98074 8.06031 8.11675 8.36911 8.78637 8.89105 9.32216 10.84624 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.010505 B = 0.007302 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.801677 B = 3833.803041 C = 5533.773002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.130 3.870 3 N -0.476 5.476 4 H 0.434 0.566 5 N -0.310 5.310 6 C 0.103 3.897 7 C -0.277 4.277 8 C 0.601 3.399 9 O -0.570 6.570 10 N -0.580 5.580 11 C 0.204 3.796 12 C -0.546 4.546 13 H 0.083 0.917 14 C 0.083 3.917 15 N -0.883 5.883 16 Si 0.861 3.139 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.263 1.263 20 C 0.161 3.839 21 C -0.144 4.144 22 C -0.057 4.057 23 C -0.181 4.181 24 C 0.089 3.911 25 N -0.490 5.490 26 C 0.112 3.888 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.218 0.782 31 H 0.031 0.969 32 H 0.038 0.962 33 H 0.268 0.732 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.150 0.850 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.040 2.962 -2.498 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.003 4.003 3 N -0.182 5.182 4 H 0.278 0.722 5 N -0.130 5.130 6 C -0.084 4.084 7 C -0.292 4.292 8 C 0.390 3.610 9 O -0.451 6.451 10 N -0.308 5.308 11 C 0.083 3.917 12 C -0.584 4.584 13 H 0.101 0.899 14 C -0.122 4.122 15 N -0.520 5.520 16 Si 0.687 3.313 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.187 1.187 20 C 0.037 3.963 21 C -0.147 4.147 22 C -0.083 4.083 23 C -0.200 4.200 24 C -0.068 4.068 25 N -0.198 5.198 26 C -0.045 4.045 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.234 0.766 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.167 0.833 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.255 3.606 -2.990 15.005 hybrid contribution -0.497 0.502 -0.150 0.722 sum -14.751 4.108 -3.140 15.632 Atomic orbital electron populations 1.20568 0.86946 1.04691 1.03347 1.21304 0.94194 0.87164 0.97634 1.46163 1.04847 1.07843 1.59320 0.72241 1.77222 0.94972 1.14183 1.26637 1.25159 0.98871 0.91147 0.93225 1.20002 0.93338 0.93485 1.22340 1.17231 0.80807 0.84080 0.78854 1.90632 1.32572 1.80423 1.41482 1.47721 1.30841 1.09220 1.43018 1.19976 0.83827 0.96560 0.91346 1.21372 0.88406 1.41718 1.06877 0.89887 1.24837 0.95519 0.94877 0.96993 1.69880 0.97807 1.45963 1.38314 0.87063 0.78436 0.80833 0.84969 1.19463 1.20755 1.18735 1.20151 0.94965 0.84734 0.96431 1.21475 0.95768 1.00263 0.97235 1.21668 0.92483 0.94138 1.00020 1.22104 1.00709 1.02845 0.94384 1.22695 0.92612 0.95670 0.95842 1.67699 1.02374 1.13926 1.35843 1.22816 0.99250 0.94219 0.88202 0.90349 0.91117 0.88120 0.76634 0.95154 0.94441 0.92165 0.88591 0.89283 0.84384 0.85229 0.83317 0.82559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.25 36.01 0.37 -0.76 16 2 C 0.13 2.02 7.29 -81.60 -0.60 1.43 16 3 N -0.48 -7.04 7.29 33.86 0.25 -6.79 16 4 H 0.43 4.56 8.96 -182.72 -1.64 2.92 16 5 N -0.31 -5.87 12.63 30.86 0.39 -5.48 16 6 C 0.10 2.10 9.64 -16.98 -0.16 1.94 16 7 C -0.28 -5.31 5.18 -105.06 -0.54 -5.86 16 8 C 0.60 11.99 7.38 -12.52 -0.09 11.90 16 9 O -0.57 -11.65 15.30 5.27 0.08 -11.57 16 10 N -0.58 -11.35 2.44 -177.71 -0.43 -11.79 16 11 C 0.20 4.38 3.77 -5.19 -0.02 4.36 16 12 C -0.55 -13.51 7.87 -34.44 -0.27 -13.78 16 13 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 14 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 15 N -0.88 -24.64 13.96 55.43 0.77 -23.86 16 16 Si 0.86 19.63 27.47 -169.99 -4.67 14.96 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 20 C 0.16 2.73 5.62 -5.20 -0.03 2.70 16 21 C -0.14 -2.24 5.48 -104.48 -0.57 -2.81 16 22 C -0.06 -0.79 9.86 -39.28 -0.39 -1.18 16 23 C -0.18 -2.17 10.11 -39.44 -0.40 -2.57 16 24 C 0.09 1.14 11.18 -17.55 -0.20 0.94 16 25 N -0.49 -7.59 10.36 -13.25 -0.14 -7.72 16 26 C 0.11 1.76 10.86 -17.55 -0.19 1.57 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.10 1.32 6.86 -51.93 -0.36 0.97 16 30 H 0.22 4.88 5.55 -52.49 -0.29 4.59 16 31 H 0.03 0.65 7.17 -51.93 -0.37 0.28 16 32 H 0.04 0.83 4.71 -51.93 -0.24 0.58 16 33 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.10 1.60 8.02 -51.93 -0.42 1.18 16 35 H 0.09 1.49 7.31 -51.93 -0.38 1.11 16 36 H 0.14 1.90 7.96 -52.49 -0.42 1.49 16 37 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.16 2.38 8.06 -52.48 -0.42 1.95 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -30.78 333.54 -7.73 -38.52 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.82 Total: 8.75 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -3.19 Total: -0.05 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.84 Total: -55.64 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.78 -7.73 -38.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070983582.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.447 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds