Wall clock time and date at job start Fri Apr 10 2020 20:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36623 * 126.59925 * 2 1 4 4 C 1.47507 * 125.76689 * 0.02786 * 3 2 1 5 5 O 1.21602 * 120.00395 * 355.07131 * 4 3 2 6 6 N 1.34777 * 120.00229 * 175.34880 * 4 3 2 7 7 C 1.46505 * 119.99681 * 2.27630 * 6 4 3 8 8 C 1.46499 * 120.00691 * 182.27535 * 6 4 3 9 9 C 1.50699 * 109.47119 * 89.99896 * 8 6 4 10 10 H 1.08005 * 120.00059 * 0.02562 * 9 8 6 11 11 C 1.37879 * 120.00240 * 180.02562 * 9 8 6 12 12 N 1.31513 * 119.99377 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00270 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46983 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47480 * 119.99690 * 13 11 9 16 16 H 1.48498 * 109.47328 * 239.99676 * 13 11 9 17 17 N 1.34418 * 108.46403 * 180.28458 * 3 2 1 18 18 N 1.28753 * 109.57598 * 359.55448 * 17 3 2 19 19 N 1.35072 * 126.60220 * 180.02562 * 2 1 3 20 20 C 1.40220 * 126.61749 * 359.97438 * 19 2 1 21 21 C 1.38825 * 120.06693 * 221.83769 * 20 19 2 22 22 C 1.38129 * 119.93469 * 179.74684 * 21 20 19 23 23 C 1.38276 * 120.05934 * 0.55020 * 22 21 20 24 24 C 1.38275 * 120.14017 * 359.70224 * 23 22 21 25 25 C 1.38122 * 120.06073 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.47683 * 84.29976 * 1 2 3 27 27 H 1.09005 * 109.47124 * 204.29667 * 1 2 3 28 28 H 1.09000 * 109.47503 * 324.29960 * 1 2 3 29 29 H 1.08997 * 109.47249 * 83.98429 * 7 6 4 30 30 H 1.09000 * 109.47323 * 203.99025 * 7 6 4 31 31 H 1.08999 * 109.47041 * 323.98577 * 7 6 4 32 32 H 1.08995 * 109.47158 * 210.00433 * 8 6 4 33 33 H 1.09005 * 109.46835 * 329.99974 * 8 6 4 34 34 H 0.97002 * 119.99501 * 180.02562 * 12 11 9 35 35 H 1.08000 * 120.03571 * 0.02562 * 21 20 19 36 36 H 1.07998 * 119.96832 * 180.27553 * 22 21 20 37 37 H 1.08009 * 119.92790 * 179.72434 * 23 22 21 38 38 H 1.07997 * 119.97502 * 180.02562 * 24 23 22 39 39 H 1.08003 * 120.03233 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3216 1.0968 0.0000 4 6 1.8747 2.5026 0.0006 5 8 0.6906 2.7643 -0.0894 6 7 2.7793 3.4973 0.0952 7 6 4.2095 3.1841 0.1471 8 6 2.3325 4.8915 0.1460 9 6 2.1117 5.2963 1.5807 10 1 2.2871 4.5861 2.3753 11 6 1.6857 6.5732 1.8791 12 7 1.4726 7.4381 0.9116 13 14 1.4127 7.0751 3.6575 14 1 1.7211 5.9278 4.5485 15 1 2.3029 8.2156 3.9923 16 1 -0.0034 7.4807 3.8456 17 7 3.5990 0.6785 -0.0063 18 7 3.6314 -0.6086 -0.0008 19 7 2.3124 -1.0843 -0.0005 20 6 1.9076 -2.4268 -0.0006 21 6 2.5640 -3.3513 0.8004 22 6 2.1596 -4.6721 0.8021 23 6 1.1093 -5.0759 -0.0015 24 6 0.4568 -4.1584 -0.8044 25 6 0.8531 -2.8353 -0.8061 26 1 -0.3634 0.1021 -1.0225 27 1 -0.3634 -0.9367 0.4229 28 1 -0.3634 0.8345 0.5997 29 1 4.5901 3.0541 -0.8660 30 1 4.7429 4.0008 0.6337 31 1 4.3598 2.2644 0.7124 32 1 3.0925 5.5331 -0.2997 33 1 1.3995 4.9945 -0.4083 34 1 1.1733 8.3366 1.1215 35 1 3.3873 -3.0373 1.4250 36 1 2.6671 -5.3908 1.4284 37 1 0.7977 -6.1101 -0.0018 38 1 -0.3634 -4.4767 -1.4307 39 1 0.3429 -2.1190 -1.4330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077570419.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:13 Heat of formation + Delta-G solvation = 103.694235 kcal Electronic energy + Delta-G solvation = -23559.959125 eV Core-core repulsion = 20084.563340 eV Total energy + Delta-G solvation = -3475.395784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.39548 -39.62731 -38.50967 -35.18134 -34.56279 -32.61189 -32.42779 -31.37946 -29.99491 -28.29678 -27.30145 -25.68486 -24.16326 -23.82366 -23.03455 -21.74018 -20.83760 -19.18584 -17.89762 -16.79115 -16.55242 -16.29495 -15.83033 -15.32633 -15.15483 -14.78310 -14.37553 -14.16491 -13.99873 -13.89197 -13.46135 -13.08495 -12.89968 -12.82675 -12.26544 -12.19946 -12.01601 -12.00566 -11.87003 -11.58872 -11.20366 -10.96651 -10.76974 -10.64964 -10.42157 -10.10123 -9.56768 -9.51071 -9.21028 -9.12963 -8.83259 -8.40599 -7.56453 -6.01176 -4.05698 0.37264 0.82839 1.42511 1.93905 2.00881 3.18947 3.32478 3.39516 3.44347 3.84404 3.99785 4.23652 4.30698 4.40335 4.47569 4.60784 4.67790 4.81879 4.85290 4.92160 5.13131 5.17766 5.32927 5.47052 5.48265 5.63184 5.72426 5.81309 5.92889 5.95935 6.03069 6.13554 6.25741 6.27404 6.63065 6.69777 7.11433 7.46964 7.58208 7.94583 8.02062 8.26319 8.44122 8.90292 9.07453 9.59105 11.06872 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.027449 B = 0.003235 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.829798 B = 8653.362392 C = 8828.671097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.120 3.880 3 C -0.081 4.081 4 C 0.588 3.412 5 O -0.538 6.538 6 N -0.582 5.582 7 C 0.080 3.920 8 C 0.244 3.756 9 C -0.525 4.525 10 H 0.058 0.942 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 N -0.193 5.193 18 N -0.074 5.074 19 N -0.324 5.324 20 C 0.136 3.864 21 C -0.099 4.099 22 C -0.104 4.104 23 C -0.113 4.113 24 C -0.102 4.102 25 C -0.115 4.115 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.047 0.953 34 H 0.263 0.737 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.570 -25.233 -2.890 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.014 4.014 3 C -0.220 4.220 4 C 0.372 3.628 5 O -0.416 6.416 6 N -0.312 5.312 7 C -0.065 4.065 8 C 0.125 3.875 9 C -0.564 4.564 10 H 0.077 0.923 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.066 5.066 18 N -0.051 5.051 19 N -0.105 5.105 20 C 0.045 3.955 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.120 4.120 25 C -0.136 4.136 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.131 0.869 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.286 -25.187 -2.975 25.363 hybrid contribution -0.874 0.540 0.978 1.418 sum -0.588 -24.647 -1.997 24.735 Atomic orbital electron populations 1.20746 0.84578 1.04726 1.05063 1.21995 0.96294 0.85564 0.97523 1.21709 0.88269 0.96413 1.15586 1.16668 0.85893 0.81814 0.78456 1.90739 1.15905 1.82952 1.51989 1.47988 1.05974 1.08414 1.68790 1.21981 0.81356 1.02114 1.01020 1.19388 0.96619 0.73790 0.97665 1.21481 1.45348 0.97202 0.92349 0.92335 1.24930 0.95246 0.96334 0.97590 1.69948 1.46412 1.05476 1.31550 0.86437 0.77859 0.78382 0.84719 1.19810 1.20957 1.20879 1.74785 1.19176 1.02996 1.09601 1.82076 0.95164 1.04196 1.23671 1.47511 1.07087 1.04583 1.51338 1.17525 0.98042 0.80226 0.99732 1.21101 1.00074 0.92880 0.97844 1.21113 0.97038 0.94993 0.99078 1.21347 0.95689 1.00125 0.95949 1.21065 0.99991 0.91898 0.99092 1.21194 0.96819 0.97356 0.98200 0.88827 0.90920 0.86873 0.93682 0.91194 0.90011 0.94624 0.93523 0.92780 0.84625 0.84730 0.85096 0.84639 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 8.14 36.01 0.29 -0.87 16 2 C 0.12 1.88 6.84 -81.75 -0.56 1.32 16 3 C -0.08 -1.54 6.70 -83.54 -0.56 -2.10 16 4 C 0.59 13.23 7.67 -12.48 -0.10 13.13 16 5 O -0.54 -13.24 14.49 5.28 0.08 -13.17 16 6 N -0.58 -13.50 2.86 -184.20 -0.53 -14.03 16 7 C 0.08 1.53 9.56 59.85 0.57 2.10 16 8 C 0.24 6.59 5.15 -5.19 -0.03 6.56 16 9 C -0.52 -15.19 9.39 -34.44 -0.32 -15.51 16 10 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 13 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 N -0.19 -3.50 8.80 32.85 0.29 -3.21 16 18 N -0.07 -1.22 13.64 60.35 0.82 -0.40 16 19 N -0.32 -4.67 3.71 -6.72 -0.02 -4.70 16 20 C 0.14 1.52 6.13 -83.58 -0.51 1.01 16 21 C -0.10 -0.94 9.86 -39.40 -0.39 -1.33 16 22 C -0.10 -0.70 10.04 -39.61 -0.40 -1.10 16 23 C -0.11 -0.66 10.04 -39.55 -0.40 -1.05 16 24 C -0.10 -0.65 10.04 -39.61 -0.40 -1.05 16 25 C -0.12 -1.01 8.36 -39.40 -0.33 -1.34 16 26 H 0.09 1.03 8.13 -51.93 -0.42 0.61 16 27 H 0.07 0.70 6.96 -51.93 -0.36 0.34 16 28 H 0.11 1.67 6.87 -51.93 -0.36 1.31 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 31 H 0.08 1.52 5.34 -51.93 -0.28 1.25 16 32 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.05 1.38 7.39 -51.93 -0.38 1.00 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 38 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.14 1.08 7.03 -52.48 -0.37 0.71 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -34.13 335.34 -6.48 -40.61 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -4.67 Total: -2.62 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -3.22 Total: 1.43 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 1.30 Total: -48.38 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.13 -6.48 -40.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077570419.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.301 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds