Wall clock time and date at job start Fri Apr 10 2020 20:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38014 * 126.31377 * 2 1 4 4 C 1.47418 * 126.40554 * 359.97438 * 3 2 1 5 5 O 1.21608 * 119.99911 * 322.92375 * 4 3 2 6 6 N 1.34777 * 120.00195 * 142.92473 * 4 3 2 7 7 C 1.46503 * 119.99876 * 4.54999 * 6 4 3 8 8 C 1.46498 * 120.00209 * 184.55275 * 6 4 3 9 9 C 1.50694 * 109.47543 * 89.99841 * 8 6 4 10 10 H 1.07999 * 119.99737 * 0.02562 * 9 8 6 11 11 C 1.37873 * 120.00520 * 180.02562 * 9 8 6 12 12 N 1.31514 * 120.00175 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99749 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46690 * 90.00381 * 13 11 9 15 15 H 1.48500 * 109.47058 * 210.00161 * 13 11 9 16 16 H 1.48491 * 109.47012 * 330.00410 * 13 11 9 17 17 C 1.41371 * 107.18542 * 180.02562 * 3 2 1 18 18 N 1.30438 * 108.08203 * 359.97438 * 17 3 2 19 19 N 1.34626 * 126.31843 * 180.02562 * 2 1 3 20 20 C 1.39812 * 125.77557 * 359.97438 * 19 2 1 21 21 C 1.38946 * 119.68900 * 154.72545 * 20 19 2 22 22 C 1.38416 * 119.10686 * 179.77870 * 21 20 19 23 23 C 1.38800 * 118.48346 * 0.48755 * 22 21 20 24 24 C 1.38129 * 119.29227 * 359.75570 * 23 22 21 25 25 N 1.31896 * 120.84451 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47249 * 89.99598 * 1 2 3 27 27 H 1.09008 * 109.46850 * 209.99514 * 1 2 3 28 28 H 1.09004 * 109.47312 * 329.99486 * 1 2 3 29 29 H 1.09005 * 109.46911 * 84.82293 * 7 6 4 30 30 H 1.08996 * 109.46822 * 204.81818 * 7 6 4 31 31 H 1.09000 * 109.47249 * 324.82372 * 7 6 4 32 32 H 1.09001 * 109.47203 * 210.00488 * 8 6 4 33 33 H 1.09006 * 109.47036 * 329.99839 * 8 6 4 34 34 H 0.97002 * 119.99591 * 179.97438 * 12 11 9 35 35 H 1.08004 * 125.95337 * 179.74262 * 17 3 2 36 36 H 1.08004 * 120.44384 * 0.02562 * 21 20 19 37 37 H 1.07998 * 120.75944 * 180.24272 * 22 21 20 38 38 H 1.07999 * 120.35531 * 179.73367 * 23 22 21 39 39 H 1.07998 * 119.58149 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3243 1.1121 0.0000 4 6 1.8864 2.5197 -0.0005 5 8 0.9036 2.8505 -0.6359 6 7 2.5751 3.4401 0.7031 7 6 3.8144 3.0624 1.3871 8 6 2.0845 4.8181 0.7841 9 6 1.1725 4.9574 1.9757 10 1 0.9781 4.1049 2.6095 11 6 0.5862 6.1732 2.2567 12 7 -0.2093 6.2949 3.2969 13 14 0.9230 7.6481 1.1608 14 1 -0.0844 7.6950 0.0707 15 1 0.8390 8.8928 1.9663 16 1 2.2819 7.5288 0.5742 17 6 3.6599 0.6488 -0.0006 18 7 3.6361 -0.6553 -0.0004 19 7 2.3043 -1.0847 -0.0005 20 6 1.8744 -2.4151 -0.0006 21 6 2.7013 -3.4055 -0.5164 22 6 2.2656 -4.7192 -0.5063 23 6 1.0082 -4.9956 0.0126 24 6 0.2374 -3.9601 0.5041 25 7 0.6819 -2.7185 0.4859 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8900 0.5139 29 1 4.6481 3.1218 0.6874 30 1 3.9908 3.7418 2.2209 31 1 3.7264 2.0425 1.7616 32 1 2.9291 5.4987 0.8914 33 1 1.5345 5.0620 -0.1249 34 1 -0.6214 7.1505 3.4947 35 1 4.5455 1.2671 -0.0047 36 1 3.6726 -3.1541 -0.9162 37 1 2.8880 -5.5106 -0.8968 38 1 0.6363 -6.0094 0.0314 39 1 -0.7418 -4.1698 0.9085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078427707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:17 Heat of formation + Delta-G solvation = 102.490749 kcal Electronic energy + Delta-G solvation = -23630.985064 eV Core-core repulsion = 20155.537092 eV Total energy + Delta-G solvation = -3475.447972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.84804 -40.22041 -38.49822 -34.92472 -34.00700 -32.94211 -32.44726 -31.97309 -29.98032 -28.47678 -27.12376 -25.86448 -24.34483 -24.11740 -22.76006 -21.32548 -20.61071 -18.45808 -17.77641 -16.88753 -16.84718 -16.46012 -16.04910 -15.54819 -15.24897 -14.81532 -14.57791 -14.24796 -14.10156 -13.67295 -13.60015 -13.10321 -12.85445 -12.63838 -12.49134 -12.32084 -12.12583 -11.93809 -11.80305 -11.41612 -11.01679 -10.90629 -10.55983 -10.46959 -10.26708 -10.10832 -9.82769 -9.50934 -9.08055 -8.96911 -8.55281 -8.37803 -7.62686 -6.04947 -4.03639 0.39654 0.80485 1.79335 1.98308 2.35554 3.32743 3.36943 3.38934 3.40726 3.66824 3.97232 4.12861 4.27333 4.43324 4.49596 4.61551 4.67185 4.78786 4.94938 5.20051 5.26040 5.32034 5.36483 5.54891 5.64697 5.71258 5.73438 5.81396 5.86103 6.06176 6.19608 6.22619 6.24411 6.38462 6.76823 6.96214 7.01413 7.22184 7.40319 7.64766 7.67251 8.31062 8.51346 8.97675 9.05499 9.55476 11.08439 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.029209 B = 0.003388 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.374475 B = 8261.416119 C = 8756.797147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.173 3.827 3 C -0.273 4.273 4 C 0.587 3.413 5 O -0.540 6.540 6 N -0.591 5.591 7 C 0.081 3.919 8 C 0.216 3.784 9 C -0.529 4.529 10 H 0.075 0.925 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.265 1.265 17 C 0.098 3.902 18 N -0.296 5.296 19 N -0.324 5.324 20 C 0.373 3.627 21 C -0.160 4.160 22 C -0.054 4.054 23 C -0.186 4.186 24 C 0.131 3.869 25 N -0.498 5.498 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.200 0.800 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.006 -22.329 -7.176 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.047 3.953 3 C -0.287 4.287 4 C 0.374 3.626 5 O -0.417 6.417 6 N -0.322 5.322 7 C -0.063 4.063 8 C 0.096 3.904 9 C -0.567 4.567 10 H 0.093 0.907 11 C -0.130 4.130 12 N -0.537 5.537 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.190 1.190 17 C -0.091 4.091 18 N -0.113 5.113 19 N -0.101 5.101 20 C 0.146 3.854 21 C -0.182 4.182 22 C -0.081 4.081 23 C -0.206 4.206 24 C -0.027 4.027 25 N -0.211 5.211 26 H 0.101 0.899 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.217 0.783 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.544 -22.436 -7.071 24.417 hybrid contribution 0.323 0.941 -0.584 1.154 sum 6.867 -21.495 -7.655 23.829 Atomic orbital electron populations 1.20833 0.85574 1.05779 1.04076 1.21695 0.95366 0.84917 0.93354 1.20358 0.92683 0.94684 1.20940 1.17043 0.82914 0.83086 0.79564 1.90736 1.26724 1.80724 1.43560 1.47621 1.23923 1.11496 1.49202 1.21845 0.85928 1.01273 0.97258 1.19690 0.95128 0.77108 0.98490 1.21356 1.27317 0.97711 1.10360 0.90722 1.24855 0.94512 0.98600 0.95040 1.69903 1.31036 1.25321 1.27409 0.86847 0.79486 0.82377 0.80970 1.19880 1.21142 1.18997 1.24443 0.97843 0.91416 0.95424 1.77206 0.93883 1.13426 1.26810 1.45309 1.05082 1.02675 1.57020 1.17742 0.90718 0.82012 0.94894 1.21693 1.01968 0.92494 1.02076 1.21535 0.95556 0.95823 0.95159 1.22186 0.95604 1.01287 1.01561 1.22638 0.99639 0.85877 0.94550 1.67025 1.13988 1.23170 1.16869 0.89935 0.88193 0.88610 0.93631 0.90427 0.91954 0.95106 0.94291 0.92597 0.78309 0.83543 0.83863 0.84021 0.81503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.39 36.00 0.34 -1.34 16 2 C 0.17 2.98 6.94 -81.45 -0.56 2.41 16 3 C -0.27 -4.95 5.36 -105.05 -0.56 -5.51 16 4 C 0.59 12.83 7.35 -12.52 -0.09 12.74 16 5 O -0.54 -13.66 15.79 5.27 0.08 -13.58 16 6 N -0.59 -12.66 2.86 -184.23 -0.53 -13.19 16 7 C 0.08 1.30 9.03 59.85 0.54 1.84 16 8 C 0.22 5.37 4.24 -5.20 -0.02 5.35 16 9 C -0.53 -15.37 9.94 -34.44 -0.34 -15.72 16 10 H 0.07 2.39 8.06 -52.49 -0.42 1.96 16 11 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 12 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 13 Si 0.88 21.69 27.47 -169.99 -4.67 17.03 16 14 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 17 C 0.10 1.44 9.71 -16.95 -0.16 1.28 16 18 N -0.30 -4.46 12.01 30.88 0.37 -4.09 16 19 N -0.32 -5.05 3.73 -8.02 -0.03 -5.08 16 20 C 0.37 4.93 7.34 -154.37 -1.13 3.80 16 21 C -0.16 -1.63 9.73 -39.25 -0.38 -2.01 16 22 C -0.05 -0.38 10.17 -39.31 -0.40 -0.78 16 23 C -0.19 -1.18 10.11 -39.41 -0.40 -1.58 16 24 C 0.13 1.09 11.18 -17.56 -0.20 0.89 16 25 N -0.50 -6.10 7.58 -12.29 -0.09 -6.20 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.10 1.45 5.80 -51.92 -0.30 1.14 16 28 H 0.10 1.74 7.63 -51.93 -0.40 1.35 16 29 H 0.05 0.57 7.31 -51.93 -0.38 0.19 16 30 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 31 H 0.06 0.93 5.87 -51.93 -0.31 0.63 16 32 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 33 H 0.04 1.03 6.79 -51.93 -0.35 0.67 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.20 2.25 6.29 -52.48 -0.33 1.92 16 36 H 0.15 1.42 7.90 -52.48 -0.41 1.01 16 37 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 331.53 15.07 5.00 5.00 Total: -1.00 -36.61 331.53 -7.12 -43.73 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.55 Total: 0.11 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -3.48 Total: 3.39 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.49 Total: -55.67 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.08 Total: -13.58 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.61 -7.12 -43.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078427707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.217 kcal (2) G-P(sol) polarization free energy of solvation -36.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds