Wall clock time and date at job start Fri Apr 10 2020 20:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38277 * 119.93599 * 2 1 4 4 C 1.38128 * 120.06363 * 180.02562 * 3 2 1 5 5 C 1.38824 * 119.93601 * 0.02562 * 4 3 2 6 6 N 1.40228 * 120.06658 * 180.02562 * 5 4 3 7 7 C 1.35072 * 126.61335 * 179.97438 * 6 5 4 8 8 C 1.36622 * 106.79188 * 180.02562 * 7 6 5 9 9 C 1.47512 * 125.76538 * 180.26026 * 8 7 6 10 10 O 1.21595 * 119.99860 * 353.47980 * 9 8 7 11 11 N 1.34777 * 120.00183 * 173.47095 * 9 8 7 12 12 C 1.46499 * 119.99693 * 3.27057 * 11 9 8 13 13 C 1.46498 * 120.00370 * 183.26653 * 11 9 8 14 14 C 1.50693 * 109.47392 * 89.99991 * 13 11 9 15 15 H 1.08004 * 119.99669 * 0.02562 * 14 13 11 16 16 C 1.37873 * 120.00660 * 180.02562 * 14 13 11 17 17 N 1.31519 * 119.99355 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00495 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47140 * 90.00002 * 18 16 14 20 20 H 1.48500 * 109.47255 * 209.99964 * 18 16 14 21 21 H 1.48502 * 109.46925 * 330.00244 * 18 16 14 22 22 N 1.34417 * 108.46677 * 0.02562 * 8 7 6 23 23 N 1.28752 * 109.57875 * 359.97438 * 22 8 7 24 24 C 1.38830 * 119.86984 * 0.27128 * 5 4 3 25 25 C 1.38128 * 119.93037 * 359.47304 * 24 5 4 26 26 H 1.08996 * 109.47695 * 89.99730 * 1 2 3 27 27 H 1.09002 * 109.46846 * 209.99797 * 1 2 3 28 28 H 1.09003 * 109.46620 * 329.99171 * 1 2 3 29 29 H 1.07996 * 119.96947 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.03169 * 179.97438 * 4 3 2 31 31 H 1.07999 * 126.60310 * 0.05276 * 7 6 5 32 32 H 1.09000 * 109.47587 * 84.17881 * 12 11 9 33 33 H 1.09004 * 109.47113 * 204.17858 * 12 11 9 34 34 H 1.09003 * 109.47431 * 324.17804 * 12 11 9 35 35 H 1.08998 * 109.47094 * 210.00419 * 13 11 9 36 36 H 1.09004 * 109.46693 * 330.00461 * 13 11 9 37 37 H 0.97003 * 119.99440 * 179.97438 * 17 16 14 38 38 H 1.07995 * 120.03590 * 179.70742 * 24 5 4 39 39 H 1.07998 * 119.96360 * 180.25214 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5783 1.2014 -0.0005 5 6 4.2737 -0.0001 -0.0016 6 7 5.6760 -0.0002 -0.0016 7 6 6.4816 -1.0844 -0.0021 8 6 7.7669 -0.6212 -0.0013 9 6 8.9838 -1.4549 -0.0069 10 8 8.8941 -2.6622 0.1068 11 7 10.1950 -0.8785 -0.1382 12 6 10.3086 0.5806 -0.2033 13 6 11.3979 -1.7111 -0.2157 14 6 11.6825 -2.0498 -1.6562 15 1 11.0325 -1.6813 -2.4361 16 6 12.7725 -2.8299 -1.9787 17 7 13.5637 -3.2790 -1.0290 18 14 13.1257 -3.2492 -3.7645 19 1 14.0089 -2.2098 -4.3516 20 1 13.7990 -4.5706 -3.8389 21 1 11.8497 -3.3002 -4.5226 22 7 7.7352 0.7226 0.0002 23 7 6.5122 1.1253 -0.0001 24 6 3.5782 -1.2016 -0.0078 25 6 2.1969 -1.1984 -0.0019 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.6555 2.1327 -0.0004 30 1 4.1167 2.1376 -0.0010 31 1 6.1697 -2.1184 -0.0034 32 1 10.3253 0.9892 0.8071 33 1 11.2297 0.8506 -0.7197 34 1 9.4552 0.9877 -0.7457 35 1 12.2441 -1.1668 0.2036 36 1 11.2408 -2.6299 0.3493 37 1 14.3304 -3.8282 -1.2558 38 1 4.1165 -2.1378 -0.0135 39 1 1.6554 -2.1327 -0.0027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079014886.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:20 Heat of formation + Delta-G solvation = 102.179173 kcal Electronic energy + Delta-G solvation = -22942.536672 eV Core-core repulsion = 19467.075190 eV Total energy + Delta-G solvation = -3475.461482 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.38899 -39.82909 -38.56193 -35.30320 -34.75616 -32.59160 -31.98067 -31.58289 -30.70171 -27.96154 -27.03978 -25.82465 -24.25527 -23.59963 -23.03156 -21.52438 -21.25652 -19.53456 -17.98801 -16.53046 -16.29171 -16.08634 -15.86276 -15.62039 -15.39033 -14.97422 -14.41513 -14.29509 -14.15596 -14.06481 -13.91664 -12.94781 -12.84295 -12.72895 -12.37825 -12.25800 -12.22007 -12.03755 -11.92677 -11.43088 -11.20678 -11.12622 -10.96379 -10.66491 -10.41829 -10.11124 -9.60004 -9.51454 -9.40963 -9.20332 -8.60648 -8.40753 -7.59536 -6.01594 -4.06323 0.23203 0.84434 1.57947 1.88613 1.96035 3.24945 3.32983 3.38883 3.43496 3.76007 3.94151 4.14684 4.28653 4.35783 4.45733 4.46917 4.55819 4.81703 4.89650 4.99530 5.08552 5.12998 5.15446 5.28728 5.32434 5.47973 5.52294 5.67312 5.78212 5.96994 6.07245 6.10920 6.20601 6.24646 6.58954 6.64385 7.09266 7.45732 7.55748 7.91715 7.96822 8.25290 8.40929 8.88041 9.04858 9.58367 11.06439 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.002831 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.896538 B = 9886.576040 C =10266.150181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.100 4.100 4 C -0.102 4.102 5 C 0.135 3.865 6 N -0.316 5.316 7 C 0.083 3.917 8 C -0.072 4.072 9 C 0.586 3.414 10 O -0.540 6.540 11 N -0.581 5.581 12 C 0.079 3.921 13 C 0.244 3.756 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 N -0.192 5.192 23 N -0.071 5.071 24 C -0.122 4.122 25 C -0.097 4.097 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.135 0.865 30 H 0.142 0.858 31 H 0.206 0.794 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.263 0.737 38 H 0.137 0.863 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.776 8.302 3.085 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.119 4.119 4 C -0.122 4.122 5 C 0.043 3.957 6 N -0.095 5.095 7 C -0.070 4.070 8 C -0.210 4.210 9 C 0.370 3.630 10 O -0.418 6.418 11 N -0.311 5.311 12 C -0.066 4.066 13 C 0.125 3.875 14 C -0.565 4.565 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 N -0.066 5.066 23 N -0.049 5.049 24 C -0.142 4.142 25 C -0.115 4.115 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.152 0.848 30 H 0.160 0.840 31 H 0.222 0.778 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.155 0.845 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.474 9.080 3.182 27.231 hybrid contribution 0.278 -1.241 -1.026 1.634 sum -25.196 7.839 2.157 26.475 Atomic orbital electron populations 1.20823 0.90524 1.03186 1.02712 1.20094 0.96689 0.93004 0.98899 1.20975 0.92909 0.98242 0.99737 1.20959 0.94366 0.96958 0.99929 1.17623 0.77730 0.95711 1.04594 1.47596 1.05729 1.06732 1.49468 1.23347 0.89879 0.94746 0.99012 1.21984 0.95252 0.90010 1.13743 1.16707 0.81597 0.86117 0.78591 1.90774 1.85903 1.13217 1.51857 1.48008 1.07180 1.07607 1.68294 1.22000 1.03255 0.80255 1.01055 1.19400 0.79745 0.90703 0.97659 1.21433 1.10647 1.32030 0.92408 0.92381 1.24933 0.95918 0.95549 0.97704 1.69940 1.15943 1.35367 1.32087 0.86479 0.78357 0.77741 0.84748 1.20617 1.21083 1.19908 1.74839 1.11236 1.10799 1.09739 1.82013 0.93769 1.06123 1.23024 1.20997 0.94930 0.96343 1.01976 1.20909 0.92688 0.98316 0.99613 0.90765 0.91191 0.91217 0.84750 0.84036 0.77767 0.93591 0.91132 0.89954 0.94545 0.93499 0.92707 0.84538 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 10.01 36.00 0.36 -0.10 16 2 C -0.09 -0.56 5.88 -104.59 -0.62 -1.18 16 3 C -0.10 -0.71 9.69 -39.61 -0.38 -1.09 16 4 C -0.10 -0.96 9.68 -39.41 -0.38 -1.34 16 5 C 0.14 1.48 6.70 -83.58 -0.56 0.92 16 6 N -0.32 -4.34 3.82 -10.42 -0.04 -4.38 16 7 C 0.08 1.22 10.61 -16.71 -0.18 1.04 16 8 C -0.07 -1.32 6.70 -83.54 -0.56 -1.88 16 9 C 0.59 13.17 7.67 -12.48 -0.10 13.07 16 10 O -0.54 -13.65 16.43 5.28 0.09 -13.57 16 11 N -0.58 -13.42 2.86 -184.20 -0.53 -13.95 16 12 C 0.08 1.49 9.59 59.85 0.57 2.06 16 13 C 0.24 6.58 5.16 -5.20 -0.03 6.56 16 14 C -0.53 -15.24 9.38 -34.45 -0.32 -15.57 16 15 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 18 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 22 N -0.19 -3.37 8.80 32.85 0.29 -3.08 16 23 N -0.07 -1.12 13.12 60.35 0.79 -0.33 16 24 C -0.12 -1.06 9.47 -39.40 -0.37 -1.43 16 25 C -0.10 -0.66 9.69 -39.61 -0.38 -1.05 16 26 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 28 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 29 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 30 H 0.14 1.33 7.73 -52.49 -0.41 0.92 16 31 H 0.21 2.39 7.13 -52.49 -0.37 2.02 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.31 8.03 -51.93 -0.42 0.90 16 34 H 0.08 1.50 5.29 -51.93 -0.27 1.22 16 35 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 36 H 0.05 1.39 7.38 -51.93 -0.38 1.01 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.14 1.00 6.81 -52.49 -0.36 0.64 16 39 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 339.98 15.07 5.12 5.12 Total: -1.00 -34.44 339.98 -6.31 -40.75 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -4.71 Total: -3.27 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -3.04 Total: 1.68 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 1.25 Total: -47.81 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.44 -6.31 -40.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079014886.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.925 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds