Wall clock time and date at job start Fri Apr 10 2020 20:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38277 * 119.93599 * 2 1 4 4 C 1.38128 * 120.06363 * 180.02562 * 3 2 1 5 5 C 1.38824 * 119.93601 * 0.02562 * 4 3 2 6 6 N 1.40228 * 120.06658 * 180.02562 * 5 4 3 7 7 C 1.35072 * 126.61335 * 179.97438 * 6 5 4 8 8 C 1.36622 * 106.79188 * 180.02562 * 7 6 5 9 9 C 1.47512 * 125.76538 * 180.26026 * 8 7 6 10 10 O 1.21595 * 119.99860 * 353.47980 * 9 8 7 11 11 N 1.34777 * 120.00183 * 173.47095 * 9 8 7 12 12 C 1.46499 * 119.99693 * 3.27057 * 11 9 8 13 13 C 1.46498 * 120.00370 * 183.26653 * 11 9 8 14 14 C 1.50693 * 109.47392 * 89.99991 * 13 11 9 15 15 H 1.08004 * 119.99669 * 0.02562 * 14 13 11 16 16 C 1.37873 * 120.00660 * 180.02562 * 14 13 11 17 17 N 1.31519 * 119.99355 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00495 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47140 * 90.00002 * 18 16 14 20 20 H 1.48500 * 109.47255 * 209.99964 * 18 16 14 21 21 H 1.48502 * 109.46925 * 330.00244 * 18 16 14 22 22 N 1.34417 * 108.46677 * 0.02562 * 8 7 6 23 23 N 1.28752 * 109.57875 * 359.97438 * 22 8 7 24 24 C 1.38830 * 119.86984 * 0.27128 * 5 4 3 25 25 C 1.38128 * 119.93037 * 359.47304 * 24 5 4 26 26 H 1.08996 * 109.47695 * 89.99730 * 1 2 3 27 27 H 1.09002 * 109.46846 * 209.99797 * 1 2 3 28 28 H 1.09003 * 109.46620 * 329.99171 * 1 2 3 29 29 H 1.07996 * 119.96947 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.03169 * 179.97438 * 4 3 2 31 31 H 1.07999 * 126.60310 * 0.05276 * 7 6 5 32 32 H 1.09000 * 109.47587 * 84.17881 * 12 11 9 33 33 H 1.09004 * 109.47113 * 204.17858 * 12 11 9 34 34 H 1.09003 * 109.47431 * 324.17804 * 12 11 9 35 35 H 1.08998 * 109.47094 * 210.00419 * 13 11 9 36 36 H 1.09004 * 109.46693 * 330.00461 * 13 11 9 37 37 H 0.97003 * 119.99440 * 179.97438 * 17 16 14 38 38 H 1.07995 * 120.03590 * 179.70742 * 24 5 4 39 39 H 1.07998 * 119.96360 * 180.25214 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5783 1.2014 -0.0005 5 6 4.2737 -0.0001 -0.0016 6 7 5.6760 -0.0002 -0.0016 7 6 6.4816 -1.0844 -0.0021 8 6 7.7669 -0.6212 -0.0013 9 6 8.9838 -1.4549 -0.0069 10 8 8.8941 -2.6622 0.1068 11 7 10.1950 -0.8785 -0.1382 12 6 10.3086 0.5806 -0.2033 13 6 11.3979 -1.7111 -0.2157 14 6 11.6825 -2.0498 -1.6562 15 1 11.0325 -1.6813 -2.4361 16 6 12.7725 -2.8299 -1.9787 17 7 13.5637 -3.2790 -1.0290 18 14 13.1257 -3.2492 -3.7645 19 1 14.0089 -2.2098 -4.3516 20 1 13.7990 -4.5706 -3.8389 21 1 11.8497 -3.3002 -4.5226 22 7 7.7352 0.7226 0.0002 23 7 6.5122 1.1253 -0.0001 24 6 3.5782 -1.2016 -0.0078 25 6 2.1969 -1.1984 -0.0019 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.6555 2.1327 -0.0004 30 1 4.1167 2.1376 -0.0010 31 1 6.1697 -2.1184 -0.0034 32 1 10.3253 0.9892 0.8071 33 1 11.2297 0.8506 -0.7197 34 1 9.4552 0.9877 -0.7457 35 1 12.2441 -1.1668 0.2036 36 1 11.2408 -2.6299 0.3493 37 1 14.3304 -3.8282 -1.2558 38 1 4.1165 -2.1378 -0.0135 39 1 1.6554 -2.1327 -0.0027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079014886.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:20 Heat of formation + Delta-G solvation = 80.663564 kcal Electronic energy + Delta-G solvation = -22943.469659 eV Core-core repulsion = 19467.075190 eV Total energy + Delta-G solvation = -3476.394469 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.59534 -40.66574 -40.16430 -36.76428 -36.10853 -34.70669 -32.81379 -32.35019 -31.85054 -29.81138 -27.87001 -27.49855 -25.80757 -24.53400 -24.30475 -22.84582 -22.10951 -20.80688 -19.29347 -18.69715 -17.61581 -17.35564 -17.33758 -16.52029 -16.40240 -16.27050 -16.03748 -15.79197 -15.00459 -14.71352 -14.66471 -14.54265 -14.27383 -13.84648 -13.71365 -13.53446 -13.50481 -13.24364 -12.99058 -12.94241 -12.63323 -12.55524 -12.25382 -12.07883 -12.02131 -11.90295 -11.67068 -11.00855 -10.65279 -10.63423 -10.11475 -9.50165 -9.37793 -8.22190 -6.37230 -0.66560 0.25181 0.51387 0.69119 0.84362 1.38284 1.40742 1.51584 2.10223 2.29342 2.41397 2.62242 3.03477 3.07752 3.20672 3.61566 3.73855 3.83426 3.91776 3.95249 4.21917 4.29610 4.43318 4.48306 4.55422 4.72887 4.76940 4.89655 4.96921 4.99255 5.06664 5.09923 5.20545 5.26642 5.27982 5.47183 5.53948 5.54355 5.79153 5.88105 6.03943 6.53938 6.70434 6.73490 7.17509 7.35680 8.85273 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.002831 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.896538 B = 9886.576040 C =10266.150181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.076 4.076 3 C -0.102 4.102 4 C -0.110 4.110 5 C 0.092 3.908 6 N -0.299 5.299 7 C 0.101 3.899 8 C -0.101 4.101 9 C 0.584 3.416 10 O -0.579 6.579 11 N -0.592 5.592 12 C 0.083 3.917 13 C 0.258 3.742 14 C -0.546 4.546 15 H 0.051 0.949 16 C 0.010 3.990 17 N -0.926 5.926 18 Si 0.970 3.030 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.273 1.273 22 N -0.206 5.206 23 N -0.078 5.078 24 C -0.122 4.122 25 C -0.098 4.098 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.159 0.841 30 H 0.135 0.865 31 H 0.233 0.767 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.028 0.972 36 H 0.009 0.991 37 H 0.269 0.731 38 H 0.148 0.852 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.830 8.649 2.079 30.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.077 4.077 3 C -0.120 4.120 4 C -0.129 4.129 5 C 0.002 3.998 6 N -0.077 5.077 7 C -0.053 4.053 8 C -0.239 4.239 9 C 0.371 3.629 10 O -0.460 6.460 11 N -0.321 5.321 12 C -0.060 4.060 13 C 0.138 3.862 14 C -0.584 4.584 15 H 0.070 0.930 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.794 3.206 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.198 1.198 22 N -0.079 5.079 23 N -0.056 5.056 24 C -0.142 4.142 25 C -0.117 4.117 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.177 0.823 30 H 0.153 0.847 31 H 0.249 0.751 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.046 0.954 36 H 0.028 0.972 37 H 0.078 0.922 38 H 0.166 0.834 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -28.569 9.489 2.184 30.183 hybrid contribution 0.945 -1.316 -0.650 1.745 sum -27.624 8.174 1.534 28.849 Atomic orbital electron populations 1.20914 0.88341 1.04376 1.03652 1.20518 0.98265 0.92565 0.96312 1.21283 0.91955 0.99794 0.98990 1.21082 0.95472 0.96292 1.00100 1.18029 0.76131 0.97350 1.08319 1.47710 1.06839 1.05708 1.47416 1.23639 0.88756 0.96004 0.96912 1.21382 0.94647 0.90318 1.17575 1.17137 0.82424 0.86105 0.77273 1.90727 1.86688 1.15016 1.53540 1.48005 1.06528 1.08902 1.68709 1.22118 1.03685 0.77874 1.02334 1.18923 0.81136 0.89750 0.96408 1.21646 1.11032 1.32755 0.92973 0.93032 1.25853 0.95490 0.95077 1.02529 1.70053 1.16377 1.35705 1.34392 0.85376 0.78303 0.78009 0.78877 1.19000 1.20247 1.19767 1.74746 1.12261 1.10384 1.10494 1.81923 0.93416 1.06926 1.23345 1.21253 0.95846 0.95949 1.01166 1.21287 0.91985 0.99766 0.98647 0.89758 0.90017 0.90152 0.82346 0.84683 0.75068 0.91865 0.91169 0.88887 0.95355 0.97246 0.92245 0.83445 0.81947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 10.01 71.23 0.71 0.26 16 2 C -0.08 -0.73 5.88 -19.85 -0.12 -0.84 16 3 C -0.10 -1.17 9.69 22.25 0.22 -0.96 16 4 C -0.11 -1.91 9.68 22.38 0.22 -1.69 16 5 C 0.09 1.89 6.70 38.08 0.25 2.14 16 6 N -0.30 -8.00 3.82 -186.89 -0.71 -8.71 16 7 C 0.10 2.93 10.61 83.82 0.89 3.82 16 8 C -0.10 -3.75 6.70 40.82 0.27 -3.48 16 9 C 0.58 27.23 7.67 86.69 0.66 27.89 16 10 O -0.58 -30.56 16.43 -4.02 -0.07 -30.62 16 11 N -0.59 -28.41 2.86 -854.95 -2.44 -30.85 16 12 C 0.08 3.19 9.59 127.77 1.23 4.42 16 13 C 0.26 14.63 5.16 85.63 0.44 15.07 16 14 C -0.55 -32.48 9.38 25.60 0.24 -32.24 16 15 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 16 C 0.01 0.57 5.46 84.65 0.46 1.03 16 17 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 18 Si 0.97 45.59 29.54 68.60 2.03 47.62 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 22 N -0.21 -7.24 8.80 -49.98 -0.44 -7.68 16 23 N -0.08 -2.43 13.12 37.02 0.49 -1.95 16 24 C -0.12 -1.84 9.47 22.39 0.21 -1.63 16 25 C -0.10 -1.03 9.69 22.25 0.22 -0.81 16 26 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.08 0.18 8.08 -2.39 -0.02 0.16 16 28 H 0.08 0.19 8.08 -2.39 -0.02 0.17 16 29 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 30 H 0.14 2.45 7.73 -2.91 -0.02 2.43 16 31 H 0.23 5.17 7.13 -2.91 -0.02 5.15 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.67 8.03 -2.38 -0.02 2.65 16 34 H 0.09 3.42 5.29 -2.39 -0.01 3.41 16 35 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 36 H 0.01 0.60 7.38 -2.38 -0.02 0.58 16 37 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.15 1.81 6.81 -2.91 -0.02 1.79 16 39 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 Total: -1.00 -76.84 339.98 6.11 -70.73 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.07 Total: 4.74 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 5.91 Total: 12.99 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -2.82 Total: -105.46 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.07 Total: -30.62 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -76.84 6.11 -70.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079014886.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.391 kcal (2) G-P(sol) polarization free energy of solvation -76.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds