Wall clock time and date at job start Fri Apr 10 2020 20:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30859 * 125.39202 * 2 1 4 4 N 1.40445 * 106.97424 * 179.97438 * 3 2 1 5 5 H 0.97001 * 126.87884 * 179.97438 * 4 3 2 6 6 C 1.35287 * 106.23395 * 0.26824 * 4 3 2 7 7 C 1.47916 * 126.10096 * 179.70404 * 6 4 3 8 8 C 1.39640 * 119.99139 * 359.72278 * 7 6 4 9 9 C 1.37661 * 120.00769 * 179.72675 * 8 7 6 10 10 C 1.39704 * 119.98867 * 0.52226 * 9 8 7 11 11 C 1.47770 * 120.00499 * 179.76731 * 10 9 8 12 12 O 1.21558 * 119.99943 * 179.97438 * 11 10 9 13 13 N 1.34777 * 119.99734 * 359.97438 * 11 10 9 14 14 C 1.46508 * 119.99553 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.46995 * 324.99779 * 14 13 11 16 16 C 1.52994 * 109.47089 * 84.99814 * 14 13 11 17 17 C 1.50700 * 109.46854 * 205.00062 * 14 13 11 18 18 H 1.08005 * 119.99916 * 359.97438 * 17 14 13 19 19 C 1.37872 * 119.99934 * 180.02562 * 17 14 13 20 20 N 1.31521 * 119.99907 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00090 * 179.97438 * 19 17 14 22 22 H 1.48494 * 109.47006 * 60.00249 * 21 19 17 23 23 H 1.48504 * 109.47102 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47303 * 299.99966 * 21 19 17 25 25 C 1.39695 * 119.98490 * 359.74787 * 10 9 8 26 26 C 1.37654 * 119.99345 * 0.02562 * 25 10 9 27 27 N 1.31775 * 107.79643 * 359.56450 * 6 4 3 28 28 H 1.08999 * 109.46821 * 90.02770 * 1 2 3 29 29 H 1.09002 * 109.47213 * 210.02410 * 1 2 3 30 30 H 1.08998 * 109.47161 * 330.02475 * 1 2 3 31 31 H 1.07998 * 119.99518 * 359.97438 * 8 7 6 32 32 H 1.07998 * 120.00277 * 180.27100 * 9 8 7 33 33 H 0.96999 * 120.00195 * 359.97438 * 13 11 10 34 34 H 1.09004 * 109.47108 * 179.97438 * 16 14 13 35 35 H 1.09002 * 109.47135 * 299.99817 * 16 14 13 36 36 H 1.09001 * 109.46935 * 59.99766 * 16 14 13 37 37 H 0.97001 * 119.99550 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.00371 * 180.02562 * 25 10 9 39 39 H 1.07998 * 119.99732 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2649 1.0668 0.0000 4 7 3.5974 0.6231 0.0006 5 1 4.3948 1.1753 0.0004 6 6 3.5459 -0.7288 -0.0051 7 6 4.7069 -1.6452 -0.0130 8 6 6.0041 -1.1283 -0.0209 9 6 7.0849 -1.9809 -0.0225 10 6 6.8838 -3.3634 -0.0273 11 6 8.0437 -4.2789 -0.0343 12 8 7.8686 -5.4818 -0.0380 13 7 9.2958 -3.7801 -0.0365 14 6 10.4458 -4.6878 -0.0429 15 1 10.2112 -5.5754 0.5445 16 6 10.7638 -5.0980 -1.4821 17 6 11.6397 -3.9901 0.5562 18 1 11.5508 -2.9722 0.9062 19 6 12.8456 -4.6508 0.6565 20 7 12.9542 -5.8898 0.2289 21 14 14.3257 -3.7857 1.3984 22 1 14.0175 -3.3877 2.7954 23 1 15.4914 -4.7058 1.3921 24 1 14.6448 -2.5763 0.5980 25 6 5.5859 -3.8801 -0.0251 26 6 4.5056 -3.0270 -0.0188 27 7 2.2767 -1.0835 0.0006 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 6.1594 -0.0596 -0.0217 32 1 8.0881 -1.5811 -0.0242 33 1 9.4355 -2.8202 -0.0340 34 1 11.6197 -5.7730 -1.4868 35 1 9.9002 -5.6026 -1.9153 36 1 10.9983 -4.2102 -2.0695 37 1 13.8025 -6.3547 0.2998 38 1 5.4301 -4.9488 -0.0284 39 1 3.5022 -3.4263 -0.0175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081305779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:24 Heat of formation + Delta-G solvation = 66.662344 kcal Electronic energy + Delta-G solvation = -22592.457465 eV Core-core repulsion = 19115.455858 eV Total energy + Delta-G solvation = -3477.001608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.40357 -39.87169 -38.09813 -34.92725 -33.89547 -32.94612 -32.37836 -31.18225 -30.74121 -28.88241 -28.28429 -25.33367 -24.82000 -22.89546 -22.09990 -20.90406 -20.55472 -19.55768 -18.71656 -17.89995 -16.38291 -16.02695 -15.95083 -15.60883 -14.97074 -14.58830 -14.36382 -14.13642 -13.93844 -13.71949 -13.45131 -13.27652 -12.87910 -12.70095 -12.52447 -12.42740 -12.12643 -11.74076 -11.25553 -11.15546 -11.01209 -10.81898 -10.46714 -10.38815 -10.36984 -10.28573 -10.21668 -9.28442 -9.22676 -9.11948 -8.75868 -8.60705 -8.01196 -6.17341 -4.27328 0.22857 1.17808 1.53668 2.21337 2.53574 3.21843 3.23964 3.27757 3.28421 3.53274 3.89139 4.00549 4.22972 4.31135 4.41368 4.57420 4.70505 5.07716 5.14158 5.14936 5.21241 5.27830 5.38038 5.45639 5.52772 5.77295 5.84229 6.00335 6.13919 6.15686 6.30127 6.58861 6.67672 6.77163 6.90246 7.08084 7.34450 7.47723 7.62426 7.73631 7.84412 8.08642 8.53509 8.69600 8.97298 9.39995 10.88535 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.032625 B = 0.002575 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.034727 B =10873.259826 C =11515.381405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.227 3.773 3 N -0.315 5.315 4 N -0.478 5.478 5 H 0.442 0.558 6 C 0.337 3.663 7 C -0.031 4.031 8 C -0.103 4.103 9 C -0.089 4.089 10 C -0.094 4.094 11 C 0.537 3.463 12 O -0.545 6.545 13 N -0.699 5.699 14 C 0.263 3.737 15 H 0.051 0.949 16 C -0.148 4.148 17 C -0.536 4.536 18 H 0.061 0.939 19 C 0.067 3.933 20 N -0.882 5.882 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 C -0.067 4.067 26 C -0.071 4.071 27 N -0.529 5.529 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.138 0.862 33 H 0.388 0.612 34 H 0.092 0.908 35 H 0.016 0.984 36 H 0.027 0.973 37 H 0.266 0.734 38 H 0.146 0.854 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.397 12.393 -1.193 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.056 4.056 3 N -0.146 5.146 4 N -0.195 5.195 5 H 0.288 0.712 6 C 0.061 3.939 7 C -0.034 4.034 8 C -0.123 4.123 9 C -0.107 4.107 10 C -0.099 4.099 11 C 0.322 3.678 12 O -0.425 6.425 13 N -0.347 5.347 14 C 0.162 3.838 15 H 0.069 0.931 16 C -0.206 4.206 17 C -0.575 4.575 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.519 5.519 21 Si 0.730 3.270 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.086 4.086 26 C -0.091 4.091 27 N -0.258 5.258 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.143 0.857 32 H 0.156 0.844 33 H 0.222 0.778 34 H 0.110 0.890 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.164 0.836 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.837 11.778 -1.204 22.248 hybrid contribution 1.724 1.343 0.360 2.215 sum -17.112 13.121 -0.844 21.580 Atomic orbital electron populations 1.20128 0.83633 1.04220 1.03910 1.24324 0.98489 0.85449 0.97291 1.78035 0.86458 1.22349 1.27735 1.48034 1.08024 1.06015 1.57468 0.71194 1.22269 0.93082 0.82833 0.95679 1.17708 0.88430 0.91959 1.05289 1.20932 0.91002 0.99717 1.00690 1.21269 0.99298 0.92296 0.97867 1.20606 0.95035 0.93776 1.00452 1.18191 0.83404 0.87904 0.78281 1.90748 1.85748 1.15020 1.50939 1.46532 1.06052 1.10888 1.71177 1.18815 0.81097 0.89690 0.94183 0.93102 1.22087 1.01016 1.00337 0.97187 1.21145 0.94529 1.00032 1.41760 0.92112 1.24888 0.98789 0.94898 0.95103 1.69891 1.26042 1.10482 1.45502 0.86489 0.81585 0.79262 0.79647 1.20162 1.21090 1.20156 1.21332 0.90421 1.01290 0.95543 1.21198 1.00130 0.90924 0.96823 1.70546 0.99252 1.30718 1.25294 0.89676 0.89331 0.89918 0.85696 0.84415 0.77813 0.88989 0.96516 0.95403 0.92431 0.83620 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.23 2.51 8.12 -157.02 -1.27 1.23 16 3 N -0.32 -3.62 12.79 32.39 0.41 -3.20 16 4 N -0.48 -4.70 7.35 32.24 0.24 -4.46 16 5 H 0.44 2.86 8.10 -182.33 -1.48 1.39 16 6 C 0.34 3.79 7.82 -155.43 -1.22 2.58 16 7 C -0.03 -0.33 5.88 -104.89 -0.62 -0.95 16 8 C -0.10 -0.99 9.68 -39.27 -0.38 -1.37 16 9 C -0.09 -1.02 9.52 -39.24 -0.37 -1.39 16 10 C -0.09 -1.39 5.88 -104.91 -0.62 -2.00 16 11 C 0.54 10.44 7.73 -12.36 -0.10 10.35 16 12 O -0.55 -12.67 16.00 5.31 0.09 -12.59 16 13 N -0.70 -13.97 5.02 -55.90 -0.28 -14.25 16 14 C 0.26 6.52 2.56 -69.08 -0.18 6.34 16 15 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 16 C -0.15 -3.58 9.26 37.15 0.34 -3.24 16 17 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 18 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 19 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 20 N -0.88 -24.33 11.32 55.43 0.63 -23.70 16 21 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 C -0.07 -0.89 9.58 -39.25 -0.38 -1.26 16 26 C -0.07 -0.81 9.67 -39.28 -0.38 -1.19 16 27 N -0.53 -6.52 10.83 -8.67 -0.09 -6.61 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.13 0.78 7.19 -52.49 -0.38 0.40 16 32 H 0.14 1.37 6.39 -52.49 -0.34 1.03 16 33 H 0.39 6.52 6.56 -40.82 -0.27 6.25 16 34 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 38 H 0.15 1.95 7.64 -52.49 -0.40 1.54 16 39 H 0.14 1.50 7.84 -52.49 -0.41 1.09 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -32.60 338.50 -9.74 -42.34 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.63 Total: 5.59 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -5.18 Total: -3.34 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.90 Total: -52.23 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.60 -9.74 -42.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081305779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.002 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds