Wall clock time and date at job start Fri Apr 10 2020 20:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86810 * 119.99676 * 2 1 4 4 H 1.48497 * 109.47261 * 269.99715 * 3 2 1 5 5 H 1.48494 * 109.47034 * 30.00310 * 3 2 1 6 6 H 1.48509 * 109.46803 * 150.00087 * 3 2 1 7 7 C 1.38810 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00065 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00004 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99537 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46883 * 180.02562 * 10 9 7 12 12 C 1.30994 * 120.00204 * 124.99760 * 11 10 9 13 13 C 1.50701 * 119.99826 * 179.71900 * 12 11 10 14 14 N 1.46502 * 109.46804 * 125.27541 * 13 12 11 15 15 C 1.34774 * 120.00215 * 180.02562 * 14 13 12 16 16 O 1.21605 * 119.99624 * 359.97438 * 15 14 13 17 17 C 1.47511 * 120.00382 * 180.02562 * 15 14 13 18 18 C 1.41039 * 119.39459 * 359.97438 * 17 15 14 19 19 C 1.35183 * 121.65811 * 179.97438 * 18 17 15 20 20 C 1.41379 * 119.93316 * 0.02562 * 19 18 17 21 21 N 1.31918 * 134.40043 * 179.97438 * 20 19 18 22 22 N 1.39914 * 109.07039 * 179.97438 * 21 20 19 23 23 H 0.96998 * 124.99485 * 179.97438 * 22 21 20 24 24 C 1.33822 * 110.02523 * 0.02562 * 22 21 20 25 25 C 1.38543 * 107.83458 * 359.97438 * 24 22 21 26 26 C 1.38224 * 119.39410 * 179.72527 * 17 15 14 27 27 H 0.96992 * 120.00213 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00105 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.47613 * 59.99629 * 10 9 7 30 30 H 1.09004 * 109.46865 * 299.99839 * 10 9 7 31 31 H 1.08002 * 119.99446 * 304.99290 * 11 10 9 32 32 H 1.08002 * 120.00352 * 0.02562 * 12 11 10 33 33 H 1.08998 * 109.47474 * 245.27493 * 13 12 11 34 34 H 1.09001 * 109.47291 * 5.27780 * 13 12 11 35 35 H 0.96997 * 119.99920 * 0.02562 * 14 13 12 36 36 H 1.08005 * 119.16982 * 0.02562 * 18 17 15 37 37 H 1.08004 * 120.03848 * 180.02562 * 19 18 17 38 38 H 1.08001 * 126.08722 * 180.02562 * 24 22 21 39 39 H 1.08005 * 120.32631 * 0.02593 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.5939 -2.1953 0.0023 12 6 6.3560 -2.7157 0.9320 13 6 7.8386 -2.4453 0.9295 14 7 8.2369 -1.8960 2.2279 15 6 9.5257 -1.5754 2.4573 16 8 10.3580 -1.7427 1.5866 17 6 9.9269 -1.0228 3.7648 18 6 8.9511 -0.8346 4.7656 19 6 9.2680 -0.3321 5.9799 20 6 10.6062 0.0194 6.2706 21 7 11.2211 0.5186 7.3256 22 7 12.5825 0.6611 7.0364 23 1 13.2483 1.0083 7.6504 24 6 12.8313 0.2492 5.7877 25 6 11.6337 -0.1729 5.2336 26 6 11.2531 -0.7037 3.9884 27 1 -0.4850 0.8400 0.0004 28 1 3.8647 -0.3619 0.0014 29 1 3.8492 -3.0422 -0.8891 30 1 3.8485 -3.0425 0.8909 31 1 6.0272 -1.5689 -0.7633 32 1 5.9227 -3.3425 1.6974 33 1 8.3772 -3.3754 0.7478 34 1 8.0759 -1.7285 0.1434 35 1 7.5730 -1.7629 2.9225 36 1 7.9251 -1.0993 4.5569 37 1 8.4998 -0.1992 6.7273 38 1 13.7944 0.2456 5.2990 39 1 11.9891 -0.8571 3.2130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497662424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:36 Heat of formation + Delta-G solvation = 92.208104 kcal Electronic energy + Delta-G solvation = -21975.321917 eV Core-core repulsion = 18499.428057 eV Total energy + Delta-G solvation = -3475.893860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.75334 -39.89612 -37.14137 -36.35418 -34.86149 -32.92189 -32.59192 -31.34749 -30.79448 -29.48509 -27.53639 -25.12113 -23.86487 -23.00110 -21.62268 -21.12134 -20.71644 -19.68841 -18.66844 -17.89918 -17.57649 -17.07223 -16.09438 -15.51321 -15.22232 -15.02437 -14.56901 -14.47770 -14.33285 -14.10659 -13.80214 -13.45457 -13.24724 -13.17136 -12.75260 -12.25732 -12.14837 -11.99445 -11.91133 -11.34374 -10.87757 -10.81279 -10.77328 -10.67315 -10.19312 -10.10254 -9.61679 -9.37844 -9.27655 -9.03982 -8.77783 -8.07453 -7.25433 -5.78130 -3.14430 0.07281 1.07973 1.90697 2.14915 2.19052 2.76930 3.26968 3.38002 3.41282 3.45897 3.62995 3.79832 4.10230 4.56630 4.58574 4.64136 4.74902 4.82711 4.89928 5.08628 5.15297 5.17891 5.51019 5.54602 5.64964 5.68403 5.75491 5.88697 5.97765 6.00075 6.06485 6.25491 6.35063 6.38579 6.49244 6.51302 6.80132 7.02731 7.07301 7.43273 7.97373 8.12505 8.40613 9.19265 9.91417 10.11077 11.40017 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.002533 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.556693 B =11051.519332 C =12052.711840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.177 3.823 11 C -0.116 4.116 12 C -0.196 4.196 13 C 0.155 3.845 14 N -0.721 5.721 15 C 0.562 3.438 16 O -0.548 6.548 17 C -0.175 4.175 18 C -0.052 4.052 19 C -0.108 4.108 20 C 0.120 3.880 21 N -0.308 5.308 22 N -0.423 5.423 23 H 0.446 0.554 24 C 0.104 3.896 25 C -0.222 4.222 26 C 0.037 3.963 27 H 0.260 0.740 28 H 0.362 0.638 29 H 0.040 0.960 30 H 0.034 0.966 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.403 0.597 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.194 0.806 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.151 -1.492 13.209 32.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.051 3.949 11 C -0.135 4.135 12 C -0.216 4.216 13 C 0.032 3.968 14 N -0.373 5.373 15 C 0.350 3.650 16 O -0.428 6.428 17 C -0.180 4.180 18 C -0.075 4.075 19 C -0.129 4.129 20 C -0.035 4.035 21 N -0.135 5.135 22 N -0.122 5.122 23 H 0.290 0.710 24 C -0.055 4.055 25 C -0.232 4.232 26 C 0.015 3.985 27 H 0.070 0.930 28 H 0.195 0.805 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.238 0.762 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.211 0.789 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 29.312 -1.280 13.826 32.434 hybrid contribution 0.655 1.229 -0.148 1.400 sum 29.967 -0.051 13.677 32.940 Atomic orbital electron populations 1.69698 1.05104 1.25907 1.57380 1.24681 0.95259 0.97282 1.01897 0.86533 0.79239 0.84843 0.77842 1.21028 1.21667 1.20245 1.19064 0.80465 0.94825 1.43297 0.89133 1.42649 1.03949 1.02013 1.91258 1.19793 0.86134 0.89744 0.99262 1.23358 0.96654 0.96325 0.97179 1.22754 0.93843 1.03750 1.01216 1.20340 0.92745 0.98865 0.84863 1.45964 1.09015 1.65269 1.17011 1.18142 0.82256 0.77508 0.87085 1.90768 1.50963 1.54791 1.46250 1.19468 0.94289 1.09280 0.94970 1.20712 0.98906 0.95829 0.92044 1.19765 0.92093 1.03195 0.97806 1.21085 0.95252 0.96322 0.90819 1.77692 0.86659 1.27852 1.21324 1.46368 1.08931 1.45432 1.11449 0.70968 1.22897 0.99591 0.96554 0.86434 1.19568 0.92633 1.13538 0.97475 1.20666 0.95092 0.89289 0.93409 0.92998 0.80504 0.94279 0.94851 0.87280 0.86470 0.90812 0.91130 0.76151 0.85021 0.84665 0.78913 0.84165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.34 13.97 55.49 0.78 -28.57 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 22.15 27.74 -169.99 -4.71 17.44 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 7 C -0.25 -7.01 10.47 -15.06 -0.16 -7.16 16 8 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 9 N -0.75 -17.89 5.40 -61.08 -0.33 -18.22 16 10 C 0.18 3.34 6.70 -5.19 -0.03 3.31 16 11 C -0.12 -1.72 9.24 -36.02 -0.33 -2.06 16 12 C -0.20 -2.45 9.24 -36.02 -0.33 -2.78 16 13 C 0.15 1.83 6.11 -5.19 -0.03 1.80 16 14 N -0.72 -8.09 5.49 -62.53 -0.34 -8.44 16 15 C 0.56 7.08 7.75 -12.48 -0.10 6.98 16 16 O -0.55 -8.56 16.26 5.27 0.09 -8.47 16 17 C -0.18 -1.87 5.86 -105.06 -0.62 -2.49 16 18 C -0.05 -0.48 9.39 -39.61 -0.37 -0.85 16 19 C -0.11 -1.03 10.05 -39.47 -0.40 -1.42 16 20 C 0.12 1.25 7.49 -82.98 -0.62 0.63 16 21 N -0.31 -3.06 12.69 33.30 0.42 -2.64 16 22 N -0.42 -2.35 7.17 30.87 0.22 -2.13 16 23 H 0.45 0.71 8.96 -182.74 -1.64 -0.93 16 24 C 0.10 0.53 12.09 -16.57 -0.20 0.33 16 25 C -0.22 -1.96 6.32 -105.23 -0.66 -2.63 16 26 C 0.04 0.36 9.64 -38.69 -0.37 -0.01 16 27 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 28 H 0.36 8.42 5.52 -40.82 -0.23 8.19 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.03 0.63 7.79 -51.93 -0.40 0.22 16 31 H 0.11 1.56 7.84 -52.49 -0.41 1.15 16 32 H 0.12 1.37 7.84 -52.49 -0.41 0.96 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 35 H 0.40 3.75 6.39 -40.82 -0.26 3.49 16 36 H 0.13 0.95 6.27 -52.48 -0.33 0.62 16 37 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.19 0.10 8.06 -52.49 -0.42 -0.32 16 39 H 0.14 1.23 7.58 -52.48 -0.40 0.84 16 LS Contribution 340.05 15.07 5.12 5.12 Total: -1.00 -37.26 340.05 -8.85 -46.11 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.77 Total: 6.13 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -4.33 Total: -6.33 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: 0.75 Total: -60.00 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.26 -8.85 -46.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497662424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.315 kcal (2) G-P(sol) polarization free energy of solvation -37.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds